Adaptive evolution in a spatially structured asexual population

Genetica

Volumn 127, Issue 1-3, 2006, Pages 217-229

  Gordo, Isabel ^a   Campos, Paulo R A ^b  

^a INSTITUTO GULBENKIAN DE CIÊNCIA   (Portugal)

^b UNIVERSIDADE FEDERAL RURAL DE PERNAMBUCO   (Brazil)

Author keywords

Adaptation; Clonal interference; Fixation; Local competition; Spatial structure

Indexed keywords

ADAPTATION; AMINO ACID SUBSTITUTION; ARTICLE; ASEXUAL REPRODUCTION; BIOLOGICAL MODEL; COMPETITIVE BEHAVIOR; DEMOGRAPHY; GENETICS; MOLECULAR EVOLUTION; MUTATION; PHYSIOLOGY; POISSON DISTRIBUTION; PROBABILITY;

ADAPTATION, BIOLOGICAL; AMINO ACID SUBSTITUTION; COMPETITIVE BEHAVIOR; DEMOGRAPHY; EVOLUTION, MOLECULAR; MODELS, GENETIC; MUTATION; POISSON DISTRIBUTION; PROBABILITY; REPRODUCTION, ASEXUAL;

EID: 33746140082     PISSN: 00166707     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10709-005-4012-9     Document Type: Article

References (49)

1. D. Bachtrog I. Gordo 2004 Adaptive evolution of asexual populations under muller's ratchet Evolution 58 1403 1413
2. N. Barton 1993 The probability of fixation of a favourable allele in a subdivided population Genetical Research 62 149 158
3. N.H. Barton 1994 The reduction in fixation probability caused by substitutions at linked loci Genetical Research 64 199 208
4. N.H. Barton 1995 Linkage and the limits to natural selection Genetics 140 821 841
5. M.C. Boerlijst P.A. Hogeweg 1991 Spiral wave structure in pre-biotic evolution - hypercycles stable against parasites Physica D 48 17 28
6. P.R.A. Campos V.M. de Oliveira 2004 Mutational effects on the clonal interference phenomenon Evolution 58 932 937
7. P.R.A. Campos V.M. de Oliveira R. Giro D. Galvao 2004 Emergence of prime numbers as the result of evolutionary strategy Physical Review Letters 93 098107-1-098107-4
8. B. Charlesworth M. Morgan D. Charlesworth 1993 The effect of deleterious mutations on neutral molecular variation Genetics 134 1289 1303
9. B. Charlesworth M. Nordborg D. Charlesworth 1997 The effects of local selection, balanced polymorphism and background selection on equilibrium patterns of genetic diversity in subdivided populations Genet. Res. 70 155 174
10. J.L. Cherry J. Wakeley 2003 A diffusion approximation for selection and drift in a subdivided population Genetics 163 421 428
11. V.M. de Oliveira P.R.A. Campos 2004 Dynamics of fixation of advantageous mutations Physica A 337 546 554
12. J.W. Drake B. Charlesworth D. Charlesworth J.F. Crow 1998 Rates of spontaneous mutation Genetics 148 1667 1686
13. Elena, S. F. and R. E. Lenski (2003). Evolution experiments with microorganisms: the dynamics and genetic bases of adaptation. Nat Rev Genet. 4.
14. P.J. Gerrish R.E. Lenski 1998 The fate of competing beneficial mutations in an asexual population Genetica 102 127 144
15. D.D.G. Gessler 1995 The constraints of finite size in asexual populations and the rate of the ratchet Genetical Research 66 241 253
16. Gillespie J.H. 1991. The Causes of Molecular Evolution Oxford University Press
17. J. Haigh 1978 The accumulation of deleterious genes in a population - muller's ratchet Theor. Popul. Biol. 14 251 267
18. J.B.S. Haldane 1927 A mathematical theory of natural and artificial selection. part v: Selection and mutation Proc. Camb. Phil. Soc. 26 220 230
19. W.G. Hill A. Robertson 1966 The effect of linkage on the limits to artificial selection Genet. Res. 8 269 294
20. M. Imhof C. Schlotterer 2001 Fitness effects of advantageous mutations in evolving escherichia coli populations PNAS 98 1113 1117
21. T. Johnson 1999 The approach to mutation-selection balance in an infinite assexual population, and the evolution of mutation rates Proc. R. Soc. Lond. B 266 2389 2397
22. T. Johnson N.H. Barton 2002 The effect of deleterious alleles on adaptation in asexual organisms Genetics 162 395 411
23. S.B. Joseph D.W. Hall 2004 Spontaneous mutations in diploid saccharomyces cerevisiae: More beneficial than expected Genetics 168 1817 1825
24. M.J. Keeling 1999 The effects of local spatial structure on epidemiological invasions Proc. R. Soc. Lond. B 266 859 867
25. T.H. Keitt A.R. Johnson 1995 Spatial heterogeneity and anomalous kinetics: emergent patterns in diffusion-limited predator-prey interaction J. Theor. Biol. 172 127 139
26. Kimura M., 1983 The neutral theory of molecular evolution. Cambridge University Press
27. M. Kimura J.F. Crow 1964 The number of alleles that can be maintained in a finite populations Genetics 49 725 738
28. E. Kisdi S.A.H. Geritz 2003 On the coexistence of perennial plants by the competition-colonization trade-off Am. Nat. 161 123 138
29. R.E. Lenski M.R. Rose S.C. Simpson S.C. Tadler 1991 Longterm experimental evolution in escherichia coli.i. adaptation and divergence during 2,000 generations American Naturalist 138 1315 1341
30. A. Lipowski 1999 Oscillatoty behavior in a lattice prey-predator system Phys. Rev. E 60 5179 5184
31. J.T. D.J. Manning Thompson 1984 Muller's ratchet and the accumulation of favourable mutations Acta Biotheor. 33 219 225
32. T. Maruyama 1970 On the probability of fixation of mutatnt genes in subdivided populations Genetical Research 15 221 225
33. T. Maruyama 1974 A simple proof that certain quantities are independent of the geographical structure of population Theoretical Population Biology 5 148 154
34. T. Nagylaki 1980 The strong-migration limit in geographically structured populations Journal of Mathematical Biology 9 101 114
35. T. Nagylaki 1982 Geographical invariance in population genetics Journal of Theoretical Biology 99 159 172
36. A.I. Nilsson E. Kugelberg O.G. Berg D.I. Anderson 2004 Experimental adaptation of salmonella typhimurium to mice Genetics 168 1119 1130
37. K. Ohsawa K. Kawasaki F. Takasu N. Shigesada 2002 Recurrent habitat disturbance and species diversity in a multiple-competitive species system J. Theor. Biol. 216 123 138
38. H.A. Orr 2000 The rate of adaptation in asexuals Genetics 155 961 968
39. H.A. Orr 2003 The distribution of fitness effects among beneficial mutations Genetics 163 1519 1526
40. A. Rosas C.P. Ferreira J.F. Fontanari 2002 Evolution of protein synthesis in a lattice model of replicators Phys. Rev. Lett. 89 188 101
41. D. Rose F. Rousset 2003 Selection and drift in subdivided populations: a straightforward method for deriving diffusion approximations and applications involving dominace, selfing and local extintions Genetics 165 2153 2166
42. D.E. Rozen J.A.G.M. de Visser P.J. Gerrish 2002 Fitness effects of fixed beneficial mutations in microbial populations Curr. Biol. 12 1040 1045
43. R. Sanjuan A. Moya S.F. Elena 2004 The distribution of fitness effects caused by single-nucleotide substituion in an rna virus PNAS 101 8396 8401
44. M. Slatkin 1981 Fixation probabilities and times in a subdivided population Evolution 35 477 488
45. G.A. Watterson 1975 Number of segregating sites in genetic models without recombination Theor. Popul. Biol. 10 256 276
46. M.C. Whitlock 2002 Selection, load and inbreeding depression in a large metapopulation Genetics 160 1191 1202
47. C.O. Wilke 2004 The speed of adaptation in large asexual populations Genetics 167 2045 2053
48. J.T. Wootton 2001 Local interactions predict large-scale pattern in empirically derived cellular automata Nature 413 841 844
49. S. Wright 1931 Evolution in mendelian populations Genetics 16 97 159