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Volumn 189, Issue 3, 2011, Pages 989-1000

Distinguishing driver and passenger mutations in an evolutionary history categorized by interference

Author keywords

[No Author keywords available]

Indexed keywords

ALLELE; ARTICLE; EVOLUTIONARY ADAPTATION; GENETIC ANALYSIS; GENETIC DRIFT; GENETIC LINKAGE; MUTATIONAL ANALYSIS; NONBIOLOGICAL MODEL; POPULATION DYNAMICS; PRIORITY JOURNAL; SEQUENCE ANALYSIS;

EID: 81255146514     PISSN: 00166731     EISSN: 19432631     Source Type: Journal    
DOI: 10.1534/genetics.111.133975     Document Type: Article
Times cited : (40)

References (35)
  • 1
    • 70350641005 scopus 로고    scopus 로고
    • Genome evolution and adaptation in a long-term experiment with Escherichia coli
    • Barrick, J. E., D. S. Yu, S. H. Yoon, H. Jeong, T. K. Oh et al., 2009 Genome evolution and adaptation in a long-term experiment with Escherichia coli. Nature 461(7268): 1243-1247.
    • (2009) Nature , vol.461 , Issue.7268 , pp. 1243-1247
    • Barrick, J.E.1    Yu, D.S.2    Yoon, S.H.3    Jeong, H.4    Oh, T.K.5
  • 2
    • 77952796777 scopus 로고    scopus 로고
    • Escherichia coli rpoB mutants have increased evolvability in proportion to their fitness defects
    • Barrick, J. E., M. R. Kauth, C. C. Strelioff, and R. E. Lenski, 2010 Escherichia coli rpoB mutants have increased evolvability in proportion to their fitness defects. Mol. Biol. Evol. 27(6): 1338-1347.
    • (2010) Mol. Biol. Evol , vol.27 , Issue.6 , pp. 1338-1347
    • Barrick, J.E.1    Kauth, M.R.2    Strelioff, C.C.3    Lenski, R.E.4
  • 3
    • 0029040245 scopus 로고
    • Linkage and the limits to natural selection
    • Barton, N. H., 1995 Linkage and the limits to natural selection. Genetics 140(2): 821-841.
    • (1995) Genetics , vol.140 , Issue.2 , pp. 821-841
    • Barton, N.H.1
  • 4
    • 0025977055 scopus 로고
    • Natural and sexual selection on many loci
    • Barton, N. H., and M. Turelli, 1991 Natural and sexual selection on many loci. Genetics 127(1): 229-255.
    • (1991) Genetics , vol.127 , Issue.1 , pp. 229-255
    • Barton, N.H.1    Turelli, M.2
  • 5
    • 64049094567 scopus 로고    scopus 로고
    • Genomewide patterns of substitution in adaptively evolving populations of the RNA bacteriophage MS2
    • Betancourt, A. J., 2009 Genomewide patterns of substitution in adaptively evolving populations of the RNA bacteriophage MS2. Genetics 181(4): 1535-1544.
    • (2009) Genetics , vol.181 , Issue.4 , pp. 1535-1544
    • Betancourt, A.J.1
  • 6
    • 34548104987 scopus 로고    scopus 로고
    • Clonal interference is alleviated by high mutation rates in large populations
    • Bollback, J. P., and J. P. Huelsenbeck, 2007 Clonal interference is alleviated by high mutation rates in large populations. Mol. Biol. Evol. 24(6): 1397-1406.
    • (2007) Mol. Biol. Evol , vol.24 , Issue.6 , pp. 1397-1406
    • Bollback, J.P.1    Huelsenbeck, J.P.2
  • 7
    • 52049123852 scopus 로고    scopus 로고
    • Estimation of 2Nes from temporal allele frequency data
    • Bollback, J. P., T. L. York, and R. Nielsen, 2008 Estimation of 2Nes from temporal allele frequency data. Genetics 179: 497-502.
    • (2008) Genetics , vol.179 , pp. 497-502
    • Bollback, J.P.1    York, T.L.2    Nielsen, R.3
  • 8
    • 0142088791 scopus 로고    scopus 로고
    • Phylogenetic analysis reveals a low rate of homologous recombination in negative-sense RNA viruses
    • Chare, E. R., 2003 Phylogenetic analysis reveals a low rate of homologous recombination in negative-sense RNA viruses. J. Gen. Virol. 84(10): 2691-2703.
    • (2003) J. Gen. Virol , vol.84 , Issue.10 , pp. 2691-2703
    • Chare, E.R.1
  • 9
    • 0028952146 scopus 로고
    • HIV population dynamics in vivo: Implications for genetic variation, pathogenesis, and therapy
    • Coffin, J. M., 1995 HIV population dynamics in vivo: implications for genetic variation, pathogenesis, and therapy. Science 267(5167): 483-489.
    • (1995) Science , vol.267 , Issue.5167 , pp. 483-489
    • Coffin, J.M.1
  • 10
    • 0033555421 scopus 로고    scopus 로고
    • Diminishing returns from mutation supply rate in asexual populations
    • de Visser, J. A. M., C. W. Zeyl, P. J. Gerrish, J. L. Blanchard, and R. E. Lenski, 1999 Diminishing returns from mutation supply rate in asexual populations. Science 283(5400): 404-406.
    • (1999) Science , vol.283 , Issue.5400 , pp. 404-406
    • de Visser, J.A.M.1    Zeyl, C.W.2    Gerrish, P.J.3    Blanchard, J.L.4    Lenski, R.E.5
  • 11
    • 33847314378 scopus 로고    scopus 로고
    • Beneficial mutation selection balance and the effect of linkage on positive selection
    • Desai, M. M., and D. S. Fisher, 2007 Beneficial mutation selection balance and the effect of linkage on positive selection. Genetics 176(3): 1759-1798.
    • (2007) Genetics , vol.176 , Issue.3 , pp. 1759-1798
    • Desai, M.M.1    Fisher, D.S.2
  • 13
    • 2542583245 scopus 로고    scopus 로고
    • The fate of competing beneficial mutations in an asexual population
    • Gerrish, P. J., and R. E. Lenski, 1998 The fate of competing beneficial mutations in an asexual population. Genetica 102-103(1-6): 127-144.
    • (1998) Genetica , vol.102-103 , Issue.1-6 , pp. 127-144
    • Gerrish, P.J.1    Lenski, R.E.2
  • 14
    • 0035678847 scopus 로고    scopus 로고
    • Is the population size of a species relevant to its evolution?
    • Gillepie, J. H., 2001 Is the population size of a species relevant to its evolution? Evolution 55(11): 2161-2169.
    • (2001) Evolution , vol.55 , Issue.11 , pp. 2161-2169
    • Gillepie, J.H.1
  • 15
    • 0346373759 scopus 로고    scopus 로고
    • Unifying the epidemiological and evolutionary dynamics of pathogens
    • Grenfell, B. T., O. G. Pybus, J. R. Gog, J. L. N. Wood, J. M. Daly et al., 2004 Unifying the epidemiological and evolutionary dynamics of pathogens. Science 303(5626): 327-332.
    • (2004) Science , vol.303 , Issue.5626 , pp. 327-332
    • Grenfell, B.T.1    Pybus, O.G.2    Gog, J.R.3    Wood, J.L.N.4    Daly, J.M.5
  • 16
    • 33645076253 scopus 로고    scopus 로고
    • An equivalence principle for the incorporation of favorable mutations in asexual populations
    • Hegreness, M., N. Shoresh, D. Hartl, and R. Kishony, 2006 An equivalence principle for the incorporation of favorable mutations in asexual populations. Science 311(5767): 1615-1617.
    • (2006) Science , vol.311 , Issue.5767 , pp. 1615-1617
    • Hegreness, M.1    Shoresh, N.2    Hartl, D.3    Kishony, R.4
  • 18
    • 56749107039 scopus 로고    scopus 로고
    • Molecular characterization of clonal interference during adaptive evolution in asexual populations of Saccharomyces cerevisiae
    • Kao, K. C., and G. Sherlock, 2008 Molecular characterization of clonal interference during adaptive evolution in asexual populations of Saccharomyces cerevisiae. Nat. Genet. 40(12): 1499-1504.
    • (2008) Nat. Genet , vol.40 , Issue.12 , pp. 1499-1504
    • Kao, K.C.1    Sherlock, G.2
  • 19
    • 0036670655 scopus 로고    scopus 로고
    • General models of multilocus evolution
    • Kirkpatrick, M., T. Johnson, and N. Barton, 2002 General models of multilocus evolution. Genetics 161: 1727-1750.
    • (2002) Genetics , vol.161 , pp. 1727-1750
    • Kirkpatrick, M.1    Johnson, T.2    Barton, N.3
  • 20
    • 79960137718 scopus 로고    scopus 로고
    • Genetic variation and the fate of beneficial mutations in asexual populations
    • Lang, G. I., D. Botstein, and M. M. Desai, 2011 Genetic variation and the fate of beneficial mutations in asexual populations. Genetics 188: 647-661.
    • (2011) Genetics , vol.188 , pp. 647-661
    • Lang, G.I.1    Botstein, D.2    Desai, M.M.3
  • 21
    • 0001224667 scopus 로고
    • Some genetic aspects of sex
    • Muller, H. J., 1932 Some genetic aspects of sex. Am. Nat. 66(703): 118-138.
    • (1932) Am. Nat , vol.66 , Issue.703 , pp. 118-138
    • Muller, H.J.1
  • 22
    • 61349112079 scopus 로고    scopus 로고
    • From fitness landscapes to seascapes: Non-equilibrium dynamics of selection and adaptation
    • Mustonen, V., and M. Lässig, 2009 From fitness landscapes to seascapes: non-equilibrium dynamics of selection and adaptation. Trends Genet. 25(3): 111-119.
    • (2009) Trends Genet , vol.25 , Issue.3 , pp. 111-119
    • Mustonen, V.1    Lässig, M.2
  • 23
    • 81255164432 scopus 로고    scopus 로고
    • Statistical genetics and evolution of quantitative traits
    • in press
    • Neher, R. A., and B. I. Shraiman, 2011 Statistical genetics and evolution of quantitative traits. Rev. Mod. Phys. (in press).
    • (2011) Rev. Mod. Phys
    • Neher, R.A.1    Shraiman, B.I.2
  • 24
    • 70350599175 scopus 로고    scopus 로고
    • Quantifying the impact of immune escape on transmission dynamics of influenza
    • Park, A., J. Daly, N. Lewis, D. Smith, J. Wood et al., 2009 Quantifying the impact of immune escape on transmission dynamics of influenza. Science 326(5953): 726-728.
    • (2009) Science , vol.326 , Issue.5953 , pp. 726-728
    • Park, A.1    Daly, J.2    Lewis, N.3    Smith, D.4    Wood, J.5
  • 25
    • 77249156857 scopus 로고    scopus 로고
    • The speed of evolution in large asexual populations
    • Park, S.-C., D. Simon, and J. Krug, 2010 The speed of evolution in large asexual populations. J. Stat. Phys. 138(1-3): 381-410.
    • (2010) J. Stat. Phys , vol.138 , Issue.1-3 , pp. 381-410
    • Park, S.-C.1    Simon, D.2    Krug, J.3
  • 26
    • 34547924819 scopus 로고    scopus 로고
    • Adaptive mutations in bacteria: High rate and small effects
    • Perfeito, L., L. Fernandes, C. Mota, and I. Gordo, 2007 Adaptive mutations in bacteria: high rate and small effects. Science 317(5839): 813-815.
    • (2007) Science , vol.317 , Issue.5839 , pp. 813-815
    • Perfeito, L.1    Fernandes, L.2    Mota, C.3    Gordo, I.4
  • 27
    • 0035102156 scopus 로고    scopus 로고
    • Transition between stochastic evolution and deterministic evolution in the presence of selection: General theory and application to virology
    • Rouzine, I., A. Rodrigo, and J. Coffin, 2001 Transition between stochastic evolution and deterministic evolution in the presence of selection: general theory and application to virology. Microbiol. Mol. Biol. Rev. 65(1): 151-185.
    • (2001) Microbiol. Mol. Biol. Rev , vol.65 , Issue.1 , pp. 151-185
    • Rouzine, I.1    Rodrigo, A.2    Coffin, J.3
  • 29
  • 30
    • 0016220238 scopus 로고
    • The hitch-hiking effect of a favourable gene
    • Smith, J., and J. Haigh, 1974 The hitch-hiking effect of a favourable gene. Genet. Res. 23(01): 23-35.
    • (1974) Genet. Res , vol.23 , Issue.1 , pp. 23-35
    • Smith, J.1    Haigh, J.2
  • 31
    • 77951593683 scopus 로고    scopus 로고
    • Beneficial mutations and the dynamics of adaptation in asexual populations
    • Sniegowski, P. D., and P. J. Gerrish, 2010 Beneficial mutations and the dynamics of adaptation in asexual populations. Philos. Trans. R. Soc. B Biol. Sci. 365(1544): 1255-1263.
    • (2010) Philos. Trans. R. Soc. B Biol. Sci , vol.365 , Issue.1544 , pp. 1255-1263
    • Sniegowski, P.D.1    Gerrish, P.J.2
  • 32
    • 0024485843 scopus 로고
    • Molecular genetic variation in the centromeric region of the X chromosome in three Drosophila ananassae populations. I. Contrasts between the vermilion and forked loci
    • Stephan, W., and C. H. Langley, 1989 Molecular genetic variation in the centromeric region of the X chromosome in three Drosophila ananassae populations. I. Contrasts between the vermilion and forked loci. Genetics 121: 89-99.
    • (1989) Genetics , vol.121 , pp. 89-99
    • Stephan, W.1    Langley, C.H.2
  • 33
    • 64749094310 scopus 로고    scopus 로고
    • The cancer genome
    • Stratton, M., P. Campbell, and P. Futreal, 2009 The cancer genome. Nature 458(7329): 719-724.
    • (2009) Nature , vol.458 , Issue.7329 , pp. 719-724
    • Stratton, M.1    Campbell, P.2    Futreal, P.3
  • 34
    • 21044435697 scopus 로고    scopus 로고
    • Perspective: Sign epistasis and genetic constraint on evolutionary trajectories
    • Weinreich, D. M., R. A. Watson, and L. Chao, 2005 Perspective: sign epistasis and genetic constraint on evolutionary trajectories. Evolution 59(6): 1165-1174.
    • (2005) Evolution , vol.59 , Issue.6 , pp. 1165-1174
    • Weinreich, D.M.1    Watson, R.A.2    Chao, L.3
  • 35
    • 4644276948 scopus 로고    scopus 로고
    • The speed of adaptation in large asexual populations
    • Wilke, C. O., 2004 The speed of adaptation in large asexual populations. Genetics 167: 2045-2053.
    • (2004) Genetics , vol.167 , pp. 2045-2053
    • Wilke, C.O.1


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