메뉴 건너뛰기




Volumn 1820, Issue 1, 2012, Pages 44-55

Phosphorylation of the arginine/serine repeats of lamin B receptor by SRPK1-Insights from molecular dynamics simulations

Author keywords

Lamin B receptor; Molecular dynamics simulations; Phosphorylation; RS repeats; SRPK1

Indexed keywords

ARGININE; ASPARAGINE; HISTONE H3; LAMIN B; SERINE; SERINE ARGININE RICH PROTEIN;

EID: 81155144517     PISSN: 03044165     EISSN: 18728006     Source Type: Journal    
DOI: 10.1016/j.bbagen.2011.10.010     Document Type: Article
Times cited : (28)

References (46)
  • 1
    • 13644250683 scopus 로고    scopus 로고
    • Phosphorylation effects on cis/trans isomerization and the backbone conformation of serine-proline motifs: Accelerated molecular dynamics analysis
    • DOI 10.1021/ja0446707
    • D. Hamelberg, T. Shen, and J.A. McCammon Phosphorylation effects on cis/trans isomerization and the backbone conformation of serine-proline motifs: accelerated molecular dynamics analysis J. Am. Chem. Soc. 127 2005 1969 1974 (Pubitemid 40229179)
    • (2005) Journal of the American Chemical Society , vol.127 , Issue.6 , pp. 1969-1974
    • Hamelberg, D.1    Shen, T.2    McCammon, J.A.3
  • 3
    • 64549122329 scopus 로고    scopus 로고
    • Computational studies of protein regulation by post-translational phosphorylation
    • A. Narayanan, and M.P. Jacobson Computational studies of protein regulation by post-translational phosphorylation Curr. Opin. Struct. Biol. 19 2009 156 163
    • (2009) Curr. Opin. Struct. Biol. , vol.19 , pp. 156-163
    • Narayanan, A.1    Jacobson, M.P.2
  • 4
    • 0026058877 scopus 로고
    • a) and tra RNA processing regulators target proteins to a subnuclear compartment implicated in splicing
    • H. Li, and P.M. Bingham Arginine/serine-rich domains of the su(wa) and tra RNA processing regulators target proteins to a subnuclear compartment implicated in splicing Cell 67 1991 335 342 (Pubitemid 121001449)
    • (1991) Cell , vol.67 , Issue.2 , pp. 335-342
    • Li, H.1    Bingham, P.M.2
  • 5
    • 0035675137 scopus 로고    scopus 로고
    • A genome-wide survey of RS domain proteins
    • R. Boucher, C.A. Ouzounis, A.J. Enright, and B.J. Blencowe A genome-wide survey of RS domain proteins RNA 7 2001 1693 1701 (Pubitemid 34042284)
    • (2001) RNA , vol.7 , Issue.12 , pp. 1693-1701
    • Boucher, L.1    Ouzounis, C.A.2    Enright, A.J.3    Blencowe, B.J.4
  • 6
    • 79751475964 scopus 로고    scopus 로고
    • Serine-arginine protein kinases: A small protein kinase family with a large cellular presence
    • T. Giannakouros, E. Nikolakaki, I. Mylonis, and E. Georgatsou Serine-arginine protein kinases: a small protein kinase family with a large cellular presence FEBS J. 278 2011 570 586
    • (2011) FEBS J. , vol.278 , pp. 570-586
    • Giannakouros, T.1    Nikolakaki, E.2    Mylonis, I.3    Georgatsou, E.4
  • 7
    • 0033835333 scopus 로고    scopus 로고
    • Sorting out the complexity of SR protein functions
    • B.R. Graveley Sorting out the complexity of SR protein functions RNA 6 2000 1197 1211
    • (2000) RNA , vol.6 , pp. 1197-1211
    • Graveley, B.R.1
  • 8
    • 8644268780 scopus 로고    scopus 로고
    • A pathway of sequential Arginine-Serine-Rich Domain-Splicing signal interactions during mammalian spliceosome assembly
    • DOI 10.1016/j.molcel.2004.10.021, PII S1097276504006379
    • H. Shen, and M.R. Green A pathway of sequential arginine-serine-rich domain-splicing signal interactions during mammalian spliceosome assembly J. Mol. Cell. 16 2004 363 373 (Pubitemid 39504791)
    • (2004) Molecular Cell , vol.16 , Issue.3 , pp. 363-373
    • Shen, H.1    Green, M.R.2
  • 9
    • 33745609509 scopus 로고    scopus 로고
    • RS domains contact splicing signals and promote splicing by a common mechanism in yeast through humans
    • DOI 10.1101/gad.1422106
    • H. Shen, and M.R. Green RS domains contact splicing signals and promote splicing by a common mechanism in yeast through humans Genes Dev. 20 2006 1755 1765 (Pubitemid 43992884)
    • (2006) Genes and Development , vol.20 , Issue.13 , pp. 1755-1765
    • Shen, H.1    Green, M.R.2
  • 11
    • 79751504755 scopus 로고    scopus 로고
    • Phosphorylation mechanism and structure of serine-arginine protein kinases
    • G. Ghosh, and J.A. Adams Phosphorylation mechanism and structure of serine-arginine protein kinases FEBS J. 278 2011 587 597
    • (2011) FEBS J. , vol.278 , pp. 587-597
    • Ghosh, G.1    Adams, J.A.2
  • 12
    • 25844491145 scopus 로고    scopus 로고
    • Interplay between SRPK and Clk/Sty kinases in phosphorylation of the splicing factor ASF/SF2 is regulated by a docking motif in ASF/SF2
    • DOI 10.1016/j.molcel.2005.08.025, PII S1097276505015674
    • J.C. Ngo, S. Chakrabarti, J.H. Ding, A. Velazquez-Dones, B. Nolen, B.E. Aubol, J.A. Adams, X.D. Fu, and G. Ghosh Interplay between SRPK and Clk/Sty kinases in phosphorylation of the splicing factor ASF/SF2 is regulated by a docking motif in ASF/SF2 Mol. Cell 20 2005 77 89 (Pubitemid 41396564)
    • (2005) Molecular Cell , vol.20 , Issue.1 , pp. 77-89
    • Ngo, J.C.K.1    Chakrabarti, S.2    Ding, J.-H.3    Velazquez-Dones, A.4    Nolen, B.5    Aubol, B.E.6    Adams, J.A.7    Fu, X.-D.8    Ghosh, G.9
  • 13
    • 40649092847 scopus 로고    scopus 로고
    • A Sliding Docking Interaction Is Essential for Sequential and Processive Phosphorylation of an SR Protein by SRPK1
    • DOI 10.1016/j.molcel.2007.12.017, PII S1097276508000129
    • J.C. Ngo, K. Giang, S. Chakrabarti, C.T. Ma, N. Huynh, J.C. Hagopian, P.C. Dorrestein, X.D. Fu, J.A. Adams, and G. Ghosh A sliding docking interaction is essential for sequential and processive phosphorylation of an SR protein by SRPK1 Mol. Cell 29 2008 563 576 (Pubitemid 351374682)
    • (2008) Molecular Cell , vol.29 , Issue.5 , pp. 563-576
    • Ngo, J.C.K.1    Giang, K.2    Chakrabarti, S.3    Ma, C.-T.4    Huynh, N.5    Hagopian, J.C.6    Dorrestein, P.C.7    Fu, X.-D.8    Adams, J.A.9    Ghosh, G.10
  • 14
    • 33847035256 scopus 로고    scopus 로고
    • The RGG Domain of Npl3p Recruits Sky1p Through Docking Interactions
    • DOI 10.1016/j.jmb.2006.12.031, PII S0022283606017062
    • R. Lukasiewicz, B. Nolen, J.A. Adams, and G. Ghosh The RGG domain of Npl3p recruits Sky1p through docking interactions J. Mol. Biol. 367 2007 249 261 (Pubitemid 46274707)
    • (2007) Journal of Molecular Biology , vol.367 , Issue.1 , pp. 249-261
    • Lukasiewicz, R.1    Nolen, B.2    Adams, J.A.3    Ghosh, G.4
  • 16
    • 0025149541 scopus 로고
    • The lamin B receptor of the nuclear envelope inner membrane: A polytopic protein with eight potential transmembrane domains
    • H.J. Worman, C.D. Evans, and G. Blobel The lamin B receptor of the nuclear envelope inner membrane: a polytopic protein with eight potential transmembrane domains J. Cell Biol. 111 1990 1535 1542
    • (1990) J. Cell Biol. , vol.111 , pp. 1535-1542
    • Worman, H.J.1    Evans, C.D.2    Blobel, G.3
  • 17
    • 0028363978 scopus 로고
    • Primary structure analysis and lamin B and DNA binding of human LBR, an integral protein of the nuclear envelope inner membrane
    • Q. Ye, and H.J. Worman Primary structure analysis and lamin B and DNA binding of human LBR, an integral protein of the nuclear envelope inner membrane J. Biol. Chem. 269 1994
    • (1994) J. Biol. Chem. , vol.269
    • Ye, Q.1    Worman, H.J.2
  • 18
    • 0030480104 scopus 로고    scopus 로고
    • The lamin B receptor (LBR) provides essential chromatin docking sites at the nuclear envelope
    • A. Pyrpasopoulou, J. Meier, C. Maison, G. Simos, and S.D. Georgatos The lamin B receptor (LBR) provides essential chromatin docking sites at the nuclear envelope EMBO J. 15 1996 7108 7119 (Pubitemid 27023281)
    • (1996) EMBO Journal , vol.15 , Issue.24 , pp. 7108-7119
    • Pyrpasopoulou, A.1    Meier, J.2    Maison, C.3    Simos, G.4    Georgatos, S.D.5
  • 19
    • 0029942782 scopus 로고    scopus 로고
    • A nuclear envelope-associated kinase phosphorylates arginine-serine motifs and modulates interactions between the lamin B receptor and other nuclear proteins
    • DOI 10.1074/jbc.271.14.8365
    • E. Nikolakaki, G. Simos, S.D. Georgatos, and T. Giannakouros A nuclear envelope-associated kinase phosphorylates arginine-serine motifs and modulates interactions between the lamin B receptor and other nuclear proteins J. Biol. Chem. 271 1996 8365 8372 (Pubitemid 26108672)
    • (1996) Journal of Biological Chemistry , vol.271 , Issue.14 , pp. 8365-8372
    • Nikolakaki, E.1    Simos, G.2    Georgatos, S.D.3    Giannakouros, T.4
  • 23
    • 0031473847 scopus 로고    scopus 로고
    • SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modeling
    • DOI 10.1002/elps.1150181505
    • N. Guex, and M.C. Peitsch SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling Electrophoresis 18 1997 2714 2723 (Pubitemid 28059943)
    • (1997) Electrophoresis , vol.18 , Issue.15 , pp. 2714-2723
    • Guex, N.1    Peitsch, M.C.2
  • 24
    • 46249092554 scopus 로고    scopus 로고
    • GROMACS 4: Algorithms for highly efficient, load-balanced, and scalable molecular simulation
    • B. Hess, C. Kutzner, D. van der Spoel, and E. Lindahl GROMACS 4: algorithms for highly efficient, load-balanced, and scalable molecular simulation J. Chem. Theory Comput. 4 2008 435 447
    • (2008) J. Chem. Theory Comput. , vol.4 , pp. 435-447
    • Hess, B.1    Kutzner, C.2    Van Der Spoel, D.3    Lindahl, E.4
  • 25
    • 82755197570 scopus 로고    scopus 로고
    • Gromita: A fully integrated graphical user interface to gromacs 4
    • D. Sellis, D. Vlachakis, and M. Vlassi Gromita: a fully integrated graphical user interface to gromacs 4 Bioinform. Biol. Insights 3 2009 99 102
    • (2009) Bioinform. Biol. Insights , vol.3 , pp. 99-102
    • Sellis, D.1    Vlachakis, D.2    Vlassi, M.3
  • 26
    • 4043171970 scopus 로고    scopus 로고
    • The GB/SA continuum model for solvation. A fast analytical method for the calculation of approximate Born radii
    • D. Qiu, P.S. Shenkin, F.P. Hollinger, and W.C. Still The GB/SA continuum model for solvation. A fast analytical method for the calculation of approximate Born raddi J. Phys. Chem. A 101 1997 3005 3014 (Pubitemid 127580882)
    • (1997) Journal of Physical Chemistry A , vol.101 , Issue.16 , pp. 3005-3014
    • Qiu, D.1    Shenkin, P.S.2    Hollinger, F.P.3    Still, W.C.4
  • 28
    • 46749105987 scopus 로고    scopus 로고
    • A test on peptide stability of Amber force fields with implicit solvation
    • M.S.R. Shell, R. Ritterson, and K.A. Dill A test on peptide stability of Amber force fields with implicit solvation J. Phys. Chem. B 12 2008 6878 6886
    • (2008) J. Phys. Chem. B , vol.12 , pp. 6878-6886
    • Shell, M.S.R.1    Ritterson, R.2    Dill, K.A.3
  • 29
    • 33644753023 scopus 로고    scopus 로고
    • AMBER force-field parameters for phosphorylated amino acids in different protonation states: Phosphoserine, phosphothreonine, phosphotyrosine, and phosphohistidine
    • DOI 10.1007/s00894-005-0028-4
    • N. Homeyer, A.H. Horn, H. Lanig, and H. Sticht AMBER force-field parameters for phosphorylated amino acids in different protonation states: phosphoserine, phosphothreonine, phosphotyrosine, and phosphohistidine J. Mol. Model. 12 2006 281 289 (Pubitemid 43337197)
    • (2006) Journal of Molecular Modeling , vol.12 , Issue.3 , pp. 281-289
    • Homeyer, N.1    Horn, A.H.C.2    Lanig, H.3    Sticht, H.4
  • 31
    • 33846086933 scopus 로고    scopus 로고
    • Canonical sampling through velocity rescaling
    • G. Bussi, D. Donadio, and M. Parrinello Canonical sampling through velocity rescaling J. Chem. Phys. 126 2007 014101
    • (2007) J. Chem. Phys. , vol.126 , pp. 014101
    • Bussi, G.1    Donadio, D.2    Parrinello, M.3
  • 32
    • 33846823909 scopus 로고
    • An N log(N) method for Ewald sums in large systems
    • T. Darden, D. York, and L. Pedersen An N log(N) method for Ewald sums in large systems J. Chem. Phys. 98 1993 10089 10092
    • (1993) J. Chem. Phys. , vol.98 , pp. 10089-10092
    • Darden, T.1    York, D.2    Pedersen, L.3
  • 33
    • 33646940952 scopus 로고
    • Numerical integration of the Cartesian equation of motion of a system with constraints; Molecular dynamics of n-alkanes
    • J.C. Ryckaert, G. Ciccotti, and H.J.C. Berendsen Numerical integration of the Cartesian equation of motion of a system with constraints; molecular dynamics of n-alkanes J. Comp. Chem. 23 1977 327 341
    • (1977) J. Comp. Chem. , vol.23 , pp. 327-341
    • Ryckaert, J.C.1    Ciccotti, G.2    Berendsen, H.J.C.3
  • 35
    • 0020997912 scopus 로고
    • Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
    • W. Kabsch, and C. Sander Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features Biopolymers 22 1983 2577 2637
    • (1983) Biopolymers , vol.22 , pp. 2577-2637
    • Kabsch, W.1    Sander, C.2
  • 37
    • 31544433157 scopus 로고    scopus 로고
    • Serine/arginine-rich splicing factors belong to a class of intrinsically disordered proteins
    • DOI 10.1093/nar/gkj424
    • C. Haynes, and L.M. Iakoucheva Serine/arginine-rich splicing factors belong to a class of intrinsically disordered proteins Nucleic Acids Res. 34 2006 305 312 (Pubitemid 43160053)
    • (2006) Nucleic Acids Research , vol.34 , Issue.1 , pp. 305-312
    • Haynes, C.1    Iakoucheva, L.M.2
  • 38
    • 25144472591 scopus 로고    scopus 로고
    • Showing your ID: Intrinsic disorder as an ID for recognition, regulation and cell signaling
    • DOI 10.1002/jmr.747
    • V.N. Uversky, C.J. Oldfield, and A.K. Dunker Showing your ID: intrinsic disorder as an ID for recognition, regulation and cell signaling J. Mol. Recognit. 18 2005 343 384 (Pubitemid 41341287)
    • (2005) Journal of Molecular Recognition , vol.18 , Issue.5 , pp. 343-384
    • Uversky, V.N.1    Oldfield, C.J.2    Dunker, A.K.3
  • 39
    • 0030942845 scopus 로고    scopus 로고
    • Mitotic phosphorylation of the lamin B receptor by a serine/arginine kinase and p34(cdc2)
    • DOI 10.1074/jbc.272.10.6208
    • E. Nikolakaki, J. Meier, G. Simos, S.D. Georgatos, and T. Giannakouros Mitotic phosphorylation of the lamin B receptor by a serine/arginine kinase and p34(cdc2) J. Biol. Chem. 272 1997 6208 6213 (Pubitemid 27118090)
    • (1997) Journal of Biological Chemistry , vol.272 , Issue.10 , pp. 6208-6213
    • Nikolakaki, E.1    Meier, J.2    Simos, G.3    Georgatos, S.D.4    Giannakouros, T.5
  • 40
    • 77958453919 scopus 로고    scopus 로고
    • Requirement for lamin B receptor and its regulation by importin beta and phosphorylation in nuclear envelope assembly during mitotic exit
    • X. Lu, Y. Shi, Q. Lu, Y. Ma, J. Luo, Q. Wang, J. Ji, Q. Jiang, and C. Zhang Requirement for lamin B receptor and its regulation by importin beta and phosphorylation in nuclear envelope assembly during mitotic exit J. Biol. Chem. 285 2010 33281 33293
    • (2010) J. Biol. Chem. , vol.285 , pp. 33281-33293
    • Lu, X.1    Shi, Y.2    Lu, Q.3    Ma, Y.4    Luo, J.5    Wang, Q.6    Ji, J.7    Jiang, Q.8    Zhang, C.9
  • 41
    • 0028286596 scopus 로고
    • A serine kinase regulates intracellular localization of splicing factors in the cell cycle
    • DOI 10.1038/369678a0
    • J.F. Gui, W.S. Lane, and X.D. Fu A serine kinase regulates intracellular localization of splicing factors in the cell cycle Nature 369 1994 678 682 (Pubitemid 24199476)
    • (1994) Nature , vol.369 , Issue.6482 , pp. 678-682
    • Gui, J.-F.1    Lane, W.S.2    Fu, X.-D.3
  • 42
    • 35148821507 scopus 로고    scopus 로고
    • CSSP2: An improved method for predicting contact-dependent secondary structure propensity
    • DOI 10.1016/j.compbiolchem.2007.06.002, PII S1476927107000837
    • S. Yoon, W.J. Welsh, H. Jung, and Y.D. Yoo CSSP2: an improved method for predicting contact-dependent secondary structure propensity Comput. Biol. Chem. 31 2007 373 377 (Pubitemid 47542307)
    • (2007) Computational Biology and Chemistry , vol.31 , Issue.5-6 , pp. 373-377
    • Yoon, S.1    Welsh, W.J.2    Jung, H.3    Yoo, Y.D.4
  • 43
    • 1642442025 scopus 로고    scopus 로고
    • Temporal Association of Protamine 1 with the Inner Nuclear Membrane Protein Lamin B Receptor during Spermiogenesis
    • DOI 10.1074/jbc.M311949200
    • I. Mylonis, V. Drosou, S. Brancorsini, E. Nikolakaki, P. Sassone-Corsi, and T. Giannakouros Temporal association of protamine 1 with the inner nuclear membrane protein lamin B receptor during spermiogenesis J. Biol. Chem. 279 2004 11626 11631 (Pubitemid 38401664)
    • (2004) Journal of Biological Chemistry , vol.279 , Issue.12 , pp. 11626-11631
    • Mylonis, I.1    Drosou, V.2    Brancorsini, S.3    Nikolakaki, E.4    Sassone-Corsi, P.5    Giannakouros, T.6
  • 44
    • 1842529177 scopus 로고    scopus 로고
    • Regulation of Binding of Lamin B Receptor to Chromatin by SR Protein Kinase and cdc2 Kinase in Xenopus Egg Extracts
    • DOI 10.1074/jbc.M308854200
    • M. Takano, Y. Koyama, H. Ito, S. Hoshino, H. Onogi, M. Hagiwara, K. Furukawa, and T. Horigome Regulation of binding of lamin B receptor to chromatin by SR protein kinase and cdc2 kinase in Xenopus egg extracts J. Biol. Chem. 279 2004 13265 13271 (Pubitemid 38445906)
    • (2004) Journal of Biological Chemistry , vol.279 , Issue.13 , pp. 13265-13271
    • Takano, M.1    Koyama, Y.2    Ito, H.3    Hoshino, S.4    Onogi, H.5    Hagiwara, M.6    Furukawa, K.7    Horigome, T.8
  • 45
  • 46


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.