Genetic analysis of the matrix and non-structural genes of equine influenza virus (H3N8) from epizootic of 2008-2009 in India

Veterinary Microbiology

Volumn 152, Issue 1-2, 2011, Pages 169-175

  Virmani, Nitin ^a   Bera, B C ^a   Shanumugasundaram, K ^a   Singh, B K ^a   Gulati, B R ^a   Singh, R K ^a   Vaid, R K ^a  

^a NATIONAL RESEARCH CENTRE ON EQUINES   (India)

Author keywords

Equine influenza; Matrix; Non structural; Phylogenetic analysis

Indexed keywords

MATRIX PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; ASIA; CHINA; EQUINE INFLUENZA; GENE CLUSTER; GENETIC ANALYSIS; INDIA; INFLUENZA VIRUS A H3N8; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; SEQUENCE HOMOLOGY; VIRAL GENETICS; VIRUS GENE; VIRUS ISOLATION;

AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; ANIMALS; CHICK EMBRYO; HEMAGGLUTININ GLYCOPROTEINS, INFLUENZA VIRUS; INDIA; INFLUENZA A VIRUS, H3N8 SUBTYPE; MOLECULAR SEQUENCE DATA; ORTHOMYXOVIRIDAE INFECTIONS; PHYLOGENY; SELECTION, GENETIC; SEQUENCE ANALYSIS, RNA; VIRAL MATRIX PROTEINS; VIRAL NONSTRUCTURAL PROTEINS;

EQUIDAE; EQUINE INFLUENZA VIRUS;

EID: 80955178308     PISSN: 03781135     EISSN: 18732542     Source Type: Journal    
DOI: 10.1016/j.vetmic.2011.04.011     Document Type: Article

References (28)

1. Amir U.B., Wernery U., Ilyushina N., Webster R.G. Characterization of avian H9N2 influenza viruses from United Arab Emirates 2000 to 2003. Virology 2007, 361:45-55.
2. Bryant N.A., Rash A.S., Russell C.A., Ross J., Cooke A., Bowman S., MacRae S., Lewis N.S., Paillot R., Zanoni R., Meier H., Griffiths L.A., Daly J.M., Tiwari A., Chambers T.M., Newton J.R., Elton D.M. Antigenic and genetic variations in European and North American equine influenza virus strains (H3N8) isolated from 2006 to 2007. Vet. Microbiol. 2009, 138:41-52.
3. Burgui I., Aragon T., Ortin J., Nieto A. PABP1 and eIF4GI associate with influenza virus NS1 protein in viral mRNA translation initiation complexes. J. Gen. Virol. 2003, 84:3263-3274.
4. Callinan, I., 2008. Equine influenza: the August 2007 outbreak in Australia. Commonwealth of Australia. http://www.equineinfluenzainquiry.gov.au/.
5. Daly J.M., Lai A.C.K., Binns M.M., Chambers T.M., Barrandeguy M., Mumford J.A. Antigenic and genetic evolution of equine H3N8 influenza A viruses. J. Gen. Virol. 1996, 77:661-671.
6. Dundon W.G., Milani A., Cattoli G., Capua I. Progressive truncation of the non-structural 1 gene of H7N1 avian influenza viruses following extensive circulation in poultry. Virus Res. 2006, 119:171-176.
7. Gomez-Puertas P., Albo C., Perez-Pastrana E., Vivo A., Portela A. Influenza virus matrix protein is the major driving force in virus budding. J. Virol. 2000, 74:11538-11547.
8. Hale B.G., Randall R.E., Ortín J., Jackson D. The multifunctional NS1 protein of influenza A viruses. J. Gen. Virol. 2008, 89:2359-2376.
9. Hale B.G., Barclay W.S., Randall R.E., Russell R.J. Structure of an avian influenza A virus NS1 protein effector domain. Virology 2008, 378:1-5.
10. Hughey P.G., Roberts P.C., Holsinger L.J., Zebedee S.L., Lamb R.A., Compans R.W. Effects of antibody to the influenza A virus M2 protein on M2 surface expression and virus assembly. Virology 1995, 212:411-421.
11. Ito T., Gorman O.T., Kawaoka Y., Bean W.J., Webster R.G. Evolutionary analysis of the influenza A virus M gene with comparison of the M1 and M2 proteins. J. Virol. 1991, 65:5491-5498.
12. Lai A.C., Chambers T.M., Holland R.E., Morley P.S., Haines D.M., Townsend H.G., Barrandeguy M. Diverged evolution of recent equine-2 influenza (H3N8) viruses in the Western Hemisphere. Arch. Virol. 2001, 146:1063-1074.
13. Lindstrom S.L., Endo A., Sugita S., Pecoraro M., Hiromoto Y., Kamada M., Takahashi T., Nerome K. Phylogenetic analyses of the matrix and non-structural genes of equine influenza viruses. Arch. Virol. 1998, 143:1585-1598.
14. Liu W., Zou P., Chen Y.H. Monoclonal antibodies recognizing EVETPIRN epitope of influenza A virus M2 protein could protect mice from lethal influenza A virus challenge. Immunol. Lett. 2004, 93:131-136.
15. Naffakh N., Tomoiu A., Rameix-Welti M.A., van der Werf S. Host restriction of avian influenza viruses at the level of the ribonucleoproteins. Annu. Rev.Microbiol. 2008, 62:403-424.
16. Obenauer J.C., Denson J., Mehta P.K., Su X., Mukatira S., Finkelstein D.B., Xu X., Wang J., Ma J., Fan Y., Rakestraw K.M., Webster R.G., Hoffmann R., Krauss S., Zheng J., Zhang Z., Naeve C.W. Large-scale sequence analysis of avian influenza isolates. Science 2006, 311:1576-1580.
17. Ozawa M., Maeda J., Iwatsuki-Horimoto K., Watanabe S., Goto H., Horimoto T., Kawaoka Y. Nucleotide sequence requirements at the 5′ end of the influenza A virus M RNA segment for efficient virus replication. J. Virol. 2009, 83:3384-3388.
18. Qi T., Guo W., Huang W., Dai L., Zhao L., Li H., Li X., Zhang X., Wang Y., Yan Y., He N., Xiang W. Isolation and genetic characterization of H3N8 equine influenza virus from donkeys in China. Vet. Microbiol. 2010, 144:455-460.
19. Sergei L., Kosakovsky P., Simon D.W.F., Spencer V.M. HyPhy: hypothesis testing using phylogenies. Bioinformatics 2005, 21:676-679.
20. Sergei L., Kosakovsky P., Simon D.W.F. Datamonkey: rapid detection of selective pressure on individual sites of codon alignments. Bioinformatics 2005, 21:2531-2533.
21. Tamura K., Dudley J., Nei M., Kumar S. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 2007, 24:1596-1599.
22. Treanor J.J., Tierney E.L., Zebedee S.L., Lamb R.A., Murphy B.R. Passively transferred monoclonal antibody to the M2 protein inhibits influenza A virus replication in mice. J. Virol. 1990, 64:1375-1377.
23. Virmani N., Bera B.C., Singh B.K., Shanmugasundaram K., Gulati B.R., Barua S., Vaid R.K., Gupta A.K., Singh R.K. Equine influenza outbreak in India (2008-09): virus isolation, sero-epidemiology and phylogenetic analysis of HA gene. Vet. Microbiol. 2010, 143:224-237.
24. Wang W., Krug R.M. U6atac snRNA, the highly divergent counterpart of U6 snRNA, is the specific target that mediates inhibition of AT-AC splicing by the influenza virus NS1 protein. RNA 1998, 4:55-64.
25. Wang X., Li M., Zheng H., Muster T., Palese P., Beg A.A., Garcia-Sastre A. Influenza A virus NS1 protein prevents activation of NF-κB and induction of alpha/beta interferon. J. Virol. 2000, 74:11566-11573.
26. Webster R.G., Bean W.J., Gorman O.T., Chambers T.M., Kawaoka Y. Evolution and ecology of influenza A viruses. Microbiol. Rev. 1992, 56:152-179.
27. Widjaja L., Krauss S.L., Webby R.J., Xie T., Webster R.G. Matrix gene of influenza A viruses isolated from wild aquatic birds: ecology and emergence of influenza A viruses. J. Virol. 2004, 78:8771-8779.
28. Yamanaka T., Niwa H., Tsujimura K., Kondo T., Matsumura T. Epidemic of equine influenza among vaccinated racehorses in Japan in 2007. J. Vet. Med. Sci. 2008, 70:623-625.