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Volumn 123, Issue 7, 2011, Pages 1121-1131

Genome-wide association mapping of agronomic traits in sugar beet

Author keywords

[No Author keywords available]

Indexed keywords

AGRONOMIC TRAITS; ASSOCIATION MAPPING; COMPLEX TRAITS; EFFECT SIZE; EPISTATIC INTERACTIONS; GENETIC ARCHITECTURE; GENETIC DISTANCES; GENOME-WIDE ASSOCIATION; LARGE POPULATION; LINKAGE DISEQUILIBRIUM; MAIN EFFECT; MASTER REGULATORS; MATRIX; MIXED MODELS; PLANT BREEDING; POPULATION STRUCTURES; SINGLE-NUCLEOTIDE POLYMORPHISM MARKERS;

EID: 80855148170     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-011-1653-1     Document Type: Article
Times cited : (54)

References (40)
  • 1
    • 77955166399 scopus 로고    scopus 로고
    • Population structure and cryptic relatedness in genetic association studies
    • Astle W, Balding DJ (2009) Population structure and cryptic relatedness in genetic association studies. Stat Sci 24: 451-471.
    • (2009) Stat Sci , vol.24 , pp. 451-471
    • Astle, W.1    Balding, D.J.2
  • 2
    • 33745279056 scopus 로고    scopus 로고
    • Evaluating coverage of genome-wide association studies
    • Barett JC, Cardon LR (2006) Evaluating coverage of genome-wide association studies. Nat Genet 38: 659-662.
    • (2006) Nat Genet , vol.38 , pp. 659-662
    • Barett, J.C.1    Cardon, L.R.2
  • 3
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: a practical and powerful approach to multiple testing
    • Benjamini Y, Hochberg Y (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc 57: 289-300.
    • (1995) J R Stat Soc , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 4
    • 0038649534 scopus 로고
    • Estimation of coefficient of coancestry using molecular markers in maize
    • Bernardo R (1993) Estimation of coefficient of coancestry using molecular markers in maize. Theor Appl Genet 85: 1055-1062.
    • (1993) Theor Appl Genet , vol.85 , pp. 1055-1062
    • Bernardo, R.1
  • 5
    • 3442894519 scopus 로고    scopus 로고
    • Epistasis: too often neglected in complex trait studies?
    • Carlborg Ö, Haley CS (2004) Epistasis: too often neglected in complex trait studies? Nat Rev Genet 5: 618-625.
    • (2004) Nat Rev Genet , vol.5 , pp. 618-625
    • Carlborg, O.1    Haley, C.S.2
  • 6
    • 78650727753 scopus 로고    scopus 로고
    • Genome-wide association mapping to candidate polymorphism resolution in the unsequenced barley genome
    • Cockram J, White J, Zuluaga DL, Smith D, Comadran J et al (2010) Genome-wide association mapping to candidate polymorphism resolution in the unsequenced barley genome. PNAS 107: 21611-21616.
    • (2010) Pnas , vol.107 , pp. 21611-21616
    • Cockram, J.1    White, J.2    Zuluaga, D.L.3    Smith, D.4    Comadran, J.5
  • 8
    • 51849093133 scopus 로고    scopus 로고
    • 1st edn., Oxford: Blackwell
    • Draycott AP (2006) Sugar beet, 1st edn. Blackwell, Oxford.
    • (2006) Sugar Beet
    • Draycott, A.P.1
  • 12
    • 0000071395 scopus 로고
    • Some distance properties of latent root and vector methods used in multivariate analysis
    • Gower JC (1966) Some distance properties of latent root and vector methods used in multivariate analysis. Biometrika 53: 325-338.
    • (1966) Biometrika , vol.53 , pp. 325-338
    • Gower, J.C.1
  • 13
    • 77649182884 scopus 로고    scopus 로고
    • Prevalent positive epistasis in Escherichia coli and Saccharomyces cerevisiae metabolic networks
    • He X, Qian W, Wang Z, Li Y, Zhang J (2010) Prevalent positive epistasis in Escherichia coli and Saccharomyces cerevisiae metabolic networks. Nat Genet 42: 272-276.
    • (2010) Nat Genet , vol.42 , pp. 272-276
    • He, X.1    Qian, W.2    Wang, Z.3    Li, Y.4    Zhang, J.5
  • 14
    • 33646226097 scopus 로고
    • Linkage disequilibrium in finite populations
    • Hill WG, Robertson A (1968) Linkage disequilibrium in finite populations. Theor Appl Genet 38: 226-231.
    • (1968) Theor Appl Genet , vol.38 , pp. 226-231
    • Hill, W.G.1    Robertson, A.2
  • 15
    • 5144221069 scopus 로고    scopus 로고
    • Linkage disequilibrium mapping of yield and yield stability in modern spring barley cultivars
    • Kraakman ATW, Niks RE, van den Berg PMMM, Stam P, van Eeuwijk FA (2004) Linkage disequilibrium mapping of yield and yield stability in modern spring barley cultivars. Genetics 168: 435-446.
    • (2004) Genetics , vol.168 , pp. 435-446
    • Kraakman, A.T.W.1    Niks, R.E.2    van den Berg, P.M.M.M.3    Stam, P.4    van Eeuwijk, F.A.5
  • 16
    • 78049294150 scopus 로고    scopus 로고
    • Statistical epistasis between candidate gene alleles for complex tuber traits in an association mapping population of tetraploid potato
    • Li L, Paulo MJ, van Eeuwijk F, Gebhardt C (2010) Statistical epistasis between candidate gene alleles for complex tuber traits in an association mapping population of tetraploid potato. Theor Appl Genet 121: 1303-1310.
    • (2010) Theor Appl Genet , vol.121 , pp. 1303-1310
    • Li, L.1    Paulo, M.J.2    van Eeuwijk, F.3    Gebhardt, C.4
  • 18
    • 40049088073 scopus 로고    scopus 로고
    • Population genetic simulation and data analysis with Plabsoft
    • Maurer HP, Melchinger AE, Frisch M (2008) Population genetic simulation and data analysis with Plabsoft. Euphytica 161: 133-139.
    • (2008) Euphytica , vol.161 , pp. 133-139
    • Maurer, H.P.1    Melchinger, A.E.2    Frisch, M.3
  • 19
    • 0031833578 scopus 로고    scopus 로고
    • Quantitative trait locus (QTL) mapping using different testers and independent population samples in maize reveals low power of QTL detection and larger bias in estimates of QTL effects
    • Melchinger AE, Utz HF, Schön CC (1998) Quantitative trait locus (QTL) mapping using different testers and independent population samples in maize reveals low power of QTL detection and larger bias in estimates of QTL effects. Genetics 149: 383-403.
    • (1998) Genetics , vol.149 , pp. 383-403
    • Melchinger, A.E.1    Utz, H.F.2    Schön, C.C.3
  • 20
    • 81255150200 scopus 로고    scopus 로고
    • Association mapping for Fusarium head blight resistance in soft European winter wheat
    • doi: 10. 1007/011032-010-9516-Z
    • Miedaner T, Würschum T, Maurer HP, Korzun V, Ebmeyer E, Reif JC (2010) Association mapping for Fusarium head blight resistance in soft European winter wheat. Mol Breed. doi: 10. 1007/011032-010-9516-Z.
    • (2010) Mol Breed
    • Miedaner, T.1    Würschum, T.2    Maurer, H.P.3    Korzun, V.4    Ebmeyer, E.5    Reif, J.C.6
  • 21
    • 79955095148 scopus 로고    scopus 로고
    • A general method for controlling the genome-wide type I error rate in linkage and association mapping experiments in plants
    • Müller BU, Stich B, Piepho HP (2010) A general method for controlling the genome-wide type I error rate in linkage and association mapping experiments in plants. Heredity 106: 825-831.
    • (2010) Heredity , vol.106 , pp. 825-831
    • Müller, B.U.1    Stich, B.2    Piepho, H.P.3
  • 22
    • 69949135484 scopus 로고    scopus 로고
    • Association mapping: critical considerations shift from genotyping to experimental design
    • Myles S, Peiffer J, Brown PJ, Ersoz ES, Zhang Z et al (2009) Association mapping: critical considerations shift from genotyping to experimental design. Plant Cell 21: 2194-2202.
    • (2009) Plant Cell , vol.21 , pp. 2194-2202
    • Myles, S.1    Peiffer, J.2    Brown, P.J.3    Ersoz, E.S.4    Zhang, Z.5
  • 23
    • 33746512512 scopus 로고    scopus 로고
    • Principal components analysis corrects for stratification in genome-wide association studies
    • Price AL, Patterson NJ, Plenge RM, Weinblatt ME, Shadick NA et al (2006) Principal components analysis corrects for stratification in genome-wide association studies. Nat Genet 38: 904-909.
    • (2006) Nat Genet , vol.38 , pp. 904-909
    • Price, A.L.1    Patterson, N.J.2    Plenge, R.M.3    Weinblatt, M.E.4    Shadick, N.A.5
  • 24
    • 78649634755 scopus 로고    scopus 로고
    • Genetic basis of agronomically important traits in sugar beet (Beta vulgaris L.) investigated with joint linkage association mapping
    • Reif JC, Liu W, Gowda M, Maurer HP, Möhring J et al (2010) Genetic basis of agronomically important traits in sugar beet (Beta vulgaris L.) investigated with joint linkage association mapping. Theor Appl Genet 8: 1489-1495.
    • (2010) Theor Appl Genet , vol.8 , pp. 1489-1495
    • Reif, J.C.1    Liu, W.2    Gowda, M.3    Maurer, H.P.4    Möhring, J.5
  • 25
    • 79961210802 scopus 로고    scopus 로고
    • Mapping QTLs with main and epistatic effects underlying grain yield and heading time in soft winter wheat
    • doi: 10. 1007/s00122-011-1583-y
    • Reif JC, Maurer HP, Korzun V, Ebmeyer E, Miedaner T, Würschum T (2011a) Mapping QTLs with main and epistatic effects underlying grain yield and heading time in soft winter wheat. Theor Appl Genet. doi: 10. 1007/s00122-011-1583-y.
    • (2011) Theor Appl Genet
    • Reif, J.C.1    Maurer, H.P.2    Korzun, V.3    Ebmeyer, E.4    Miedaner, T.5    Würschum, T.6
  • 27
    • 0346035007 scopus 로고    scopus 로고
    • Mapping QTLs for sucrose content, yield and quality in a sugar beet population fingerprinted by EST-related markers
    • Schneider K, Schäfer-Pregl R, Borchardt C, Salamini F (2002) Mapping QTLs for sucrose content, yield and quality in a sugar beet population fingerprinted by EST-related markers. Theor Appl Genet 104: 1107-1113.
    • (2002) Theor Appl Genet , vol.104 , pp. 1107-1113
    • Schneider, K.1    Schäfer-Pregl, R.2    Borchardt, C.3    Salamini, F.4
  • 28
    • 33846604202 scopus 로고    scopus 로고
    • Systematic pathway analysis using high-resolution fitness profiling of combinatorial gene deletions
    • St Onge RP, Mani R, Oh J, Proctor M, Fung E et al (2007) Systematic pathway analysis using high-resolution fitness profiling of combinatorial gene deletions. Nat Genet 39: 199-206.
    • (2007) Nat Genet , vol.39 , pp. 199-206
    • St Onge, R.P.1    Mani, R.2    Oh, J.3    Proctor, M.4    Fung, E.5
  • 29
    • 53849092335 scopus 로고    scopus 로고
    • Association mapping in multiple segregating populations of sugar beet (Beta vulgaris L.)
    • Stich B, Melchinger AE, Heckenberger M, Möhring J, Schechert A et al (2008) Association mapping in multiple segregating populations of sugar beet (Beta vulgaris L.). Theor Appl Genet 117: 1167-1179.
    • (2008) Theor Appl Genet , vol.117 , pp. 1167-1179
    • Stich, B.1    Melchinger, A.E.2    Heckenberger, M.3    Möhring, J.4    Schechert, A.5
  • 30
    • 0028641810 scopus 로고
    • Variance components testing in longitudinal mixed effects model
    • Stram DO, Lee JW (1994) Variance components testing in longitudinal mixed effects model. Biometrics 50: 1171-1177.
    • (1994) Biometrics , vol.50 , pp. 1171-1177
    • Stram, D.O.1    Lee, J.W.2
  • 31
    • 10744230485 scopus 로고    scopus 로고
    • Global mapping of the yeast genetic interaction network
    • Tong AH, Lesage G, Bader GD, Ding H, Xu H et al (2004) Global mapping of the yeast genetic interaction network. Science 303: 808-813.
    • (2004) Science , vol.303 , pp. 808-813
    • Tong, A.H.1    Lesage, G.2    Bader, G.D.3    Ding, H.4    Xu, H.5
  • 32
    • 0034087107 scopus 로고    scopus 로고
    • Bias and sampling error of the estimated proportion of genotypic variance explained by quantitative trait loci determined from experimental data in maize using cross validation and validation with independent samples
    • Utz HF, Melchinger AE, Schön CC (2000) Bias and sampling error of the estimated proportion of genotypic variance explained by quantitative trait loci determined from experimental data in maize using cross validation and validation with independent samples. Genetics 154: 1839-1849.
    • (2000) Genetics , vol.154 , pp. 1839-1849
    • Utz, H.F.1    Melchinger, A.E.2    Schön, C.C.3
  • 33
    • 79958163084 scopus 로고    scopus 로고
    • Extent and genome-wide distribution of linkage disequilibrium in commercial maize germplasm
    • van Inghelandt D et al (2010) Extent and genome-wide distribution of linkage disequilibrium in commercial maize germplasm. Theor Appl Genet 123: 11-20.
    • (2010) Theor Appl Genet , vol.123 , pp. 11-20
    • van Inghelandt, D.1
  • 34
    • 0032810496 scopus 로고    scopus 로고
    • Combined linkage maps and QTLs in sugar beet (Beta vulgaris L.) from different populations
    • Weber WE, Borchardt DC, Koch G (1999) Combined linkage maps and QTLs in sugar beet (Beta vulgaris L.) from different populations. Plant Breed 118: 193-204.
    • (1999) Plant Breed , vol.118 , pp. 193-204
    • Weber, W.E.1    Borchardt, D.C.2    Koch, G.3
  • 35
    • 0034053332 scopus 로고    scopus 로고
    • Marker analysis for quantitative traits in sugar beet
    • Weber WE, Borchardt DC, Koch G (2000) Marker analysis for quantitative traits in sugar beet. Plant Breed 119: 97-106.
    • (2000) Plant Breed , vol.119 , pp. 97-106
    • Weber, W.E.1    Borchardt, D.C.2    Koch, G.3
  • 36
    • 0003752712 scopus 로고    scopus 로고
    • 2nd edn., Sunderland: Sinauer Associates
    • Weir BS (1996) Genetic data analysis II, 2nd edn. Sinauer Associates, Sunderland.
    • (1996) Genetic Data Analysis II
    • Weir, B.S.1
  • 38
    • 79958136814 scopus 로고    scopus 로고
    • Genome-wide association mapping reveals epistasis and genetic interaction networks in sugar beet
    • Würschum T, Maurer HP, Schulz B, Möhring J, Reif JC (2011) Genome-wide association mapping reveals epistasis and genetic interaction networks in sugar beet. Theor Appl Genet 123: 109-118.
    • (2011) Theor Appl Genet , vol.123 , pp. 109-118
    • Würschum, T.1    Maurer, H.P.2    Schulz, B.3    Möhring, J.4    Reif, J.C.5
  • 39
    • 31744440502 scopus 로고    scopus 로고
    • A unified mixed-model method for association mapping that accounts for multiple levels of relatedness
    • Yu J, Pressoir G, Briggs WH, Vroh Bi I, Yamasaki M et al (2006) A unified mixed-model method for association mapping that accounts for multiple levels of relatedness. Nat Genet 38: 203-208.
    • (2006) Nat Genet , vol.38 , pp. 203-208
    • Yu, J.1    Pressoir, G.2    Briggs, W.H.3    Vroh Bi, I.4    Yamasaki, M.5
  • 40
    • 33846466407 scopus 로고    scopus 로고
    • An Arabidopsis example of association mapping in structured samples
    • Zhao K, Aranzana MJ, Kim S, Lister C, Shindo C et al (2007) An Arabidopsis example of association mapping in structured samples. PLoS Genet 3: e4.
    • (2007) PLoS Genet , vol.3
    • Zhao, K.1    Aranzana, M.J.2    Kim, S.3    Lister, C.4    Shindo, C.5


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