메뉴 건너뛰기




Volumn 45, Issue , 2012, Pages 23-30

Comparing four mitochondrial genes in earthworms - Implications for identification, phylogenetics, and discovery of cryptic species

Author keywords

12S rDNA; 16S rDNA; Barcoding; COI; COII; Lumbricidae

Indexed keywords

12S RDNA; 16S RDNA; BARCODING; COI; COII; LUMBRICIDAE;

EID: 80755148795     PISSN: 00380717     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.soilbio.2011.09.018     Document Type: Article
Times cited : (46)

References (63)
  • 1
    • 33646257047 scopus 로고    scopus 로고
    • Earthworm primers for DNA-based gut content analysis and their cross-reactivity in a multi-species system
    • Admassu B., Juen A., Traugott M. Earthworm primers for DNA-based gut content analysis and their cross-reactivity in a multi-species system. Soil Biology & Biochemistry 2006, 38:1308-1315.
    • (2006) Soil Biology & Biochemistry , vol.38 , pp. 1308-1315
    • Admassu, B.1    Juen, A.2    Traugott, M.3
  • 3
    • 77951048383 scopus 로고    scopus 로고
    • Neotypification of Drawida hattamimizu Hatai, 1930 (Annelida, Oligochaeta, Megadrili, Moniligastridae) as a model linking mtDNA (COI) sequences to an earthworm type, with a response to the 'Can of Worms' theory of cryptic species
    • Blakemore R.J., Kupriyanova E.K., Grygier M.J. Neotypification of Drawida hattamimizu Hatai, 1930 (Annelida, Oligochaeta, Megadrili, Moniligastridae) as a model linking mtDNA (COI) sequences to an earthworm type, with a response to the 'Can of Worms' theory of cryptic species. ZooKeys 2010, 41:1-29.
    • (2010) ZooKeys , vol.41 , pp. 1-29
    • Blakemore, R.J.1    Kupriyanova, E.K.2    Grygier, M.J.3
  • 4
    • 77954448199 scopus 로고    scopus 로고
    • Molecular markers allow sibling species identification in red wood ants (Formica rufa group)
    • Bernasconi C., Pamilo P., Cherix D. Molecular markers allow sibling species identification in red wood ants (Formica rufa group). Systematic Entomology 2010, 35:243-249.
    • (2010) Systematic Entomology , vol.35 , pp. 243-249
    • Bernasconi, C.1    Pamilo, P.2    Cherix, D.3
  • 5
    • 0029144398 scopus 로고
    • Complete sequence of the mitochondrial DNA of the annelid worm Lumbricus terrestris
    • Boore J.L., Brown W.M. Complete sequence of the mitochondrial DNA of the annelid worm Lumbricus terrestris. Genetics 1995, 141:305-319.
    • (1995) Genetics , vol.141 , pp. 305-319
    • Boore, J.L.1    Brown, W.M.2
  • 6
    • 70349772966 scopus 로고    scopus 로고
    • Are the sexual, somatic and genetic characters enough to solve nomenclatural problems in lumbricid taxonomy?
    • Briones M.J.I., Paloma M., Posada D. Are the sexual, somatic and genetic characters enough to solve nomenclatural problems in lumbricid taxonomy?. Soil Biology & Biochemistry 2009, 41:2257-2271.
    • (2009) Soil Biology & Biochemistry , vol.41 , pp. 2257-2271
    • Briones, M.J.I.1    Paloma, M.2    Posada, D.3
  • 7
    • 78650991632 scopus 로고    scopus 로고
    • Phylogenetic analysis of New Zealand earthworms (Oligochaeta: Megascolecidae) reveals ancient clades and cryptic taxonomic diversity
    • Buckley T.R., James S., Allwood J., Bartlam S., Howitt R., Prada D. Phylogenetic analysis of New Zealand earthworms (Oligochaeta: Megascolecidae) reveals ancient clades and cryptic taxonomic diversity. Molecular Phylogenetics and Evolution 2011, 58:85-96.
    • (2011) Molecular Phylogenetics and Evolution , vol.58 , pp. 85-96
    • Buckley, T.R.1    James, S.2    Allwood, J.3    Bartlam, S.4    Howitt, R.5    Prada, D.6
  • 8
    • 39749142723 scopus 로고    scopus 로고
    • Genetic structure of invasive earthworms Dendrobaena octaedra in the boreal forest of Alberta: insights into introduction mechanisms
    • Cameron E.K., Bayne E.M., Coltman D.W. Genetic structure of invasive earthworms Dendrobaena octaedra in the boreal forest of Alberta: insights into introduction mechanisms. Molecular Ecology 2008, 17:1189-1197.
    • (2008) Molecular Ecology , vol.17 , pp. 1189-1197
    • Cameron, E.K.1    Bayne, E.M.2    Coltman, D.W.3
  • 9
    • 0034072267 scopus 로고    scopus 로고
    • The current state of insect molecular systematics: a thriving Tower of Babel
    • Caterino M.S., Cho S., Sperling F.A.H. The current state of insect molecular systematics: a thriving Tower of Babel. Annual Review of Entomology 2000, 45:1-54.
    • (2000) Annual Review of Entomology , vol.45 , pp. 1-54
    • Caterino, M.S.1    Cho, S.2    Sperling, F.A.H.3
  • 10
    • 56549130453 scopus 로고    scopus 로고
    • Molecular systematics and phylogeography of the gigantic earthworms of the Metaphire formosae species group (Clitellata, Megascolecidae)
    • Chang C.H., Lin S.M., Chen J.H. Molecular systematics and phylogeography of the gigantic earthworms of the Metaphire formosae species group (Clitellata, Megascolecidae). Molecular Phylogenetics and Evolution 2008, 49:958-968.
    • (2008) Molecular Phylogenetics and Evolution , vol.49 , pp. 958-968
    • Chang, C.H.1    Lin, S.M.2    Chen, J.H.3
  • 11
    • 61749100214 scopus 로고    scopus 로고
    • Identifying earthworms through DNA barcodes: pitfalls and promise
    • Chang C.H., Rougerie R., Chen J.H. Identifying earthworms through DNA barcodes: pitfalls and promise. Pedobiologia 2009, 52:171-180.
    • (2009) Pedobiologia , vol.52 , pp. 171-180
    • Chang, C.H.1    Rougerie, R.2    Chen, J.H.3
  • 12
    • 0032856405 scopus 로고    scopus 로고
    • Ein synoptischer Bestimmungsschlüssel der Regenwürmer österreichs (Oligochaeta: Lumbricidae)
    • Christian E., Zicsi A. Ein synoptischer Bestimmungsschlüssel der Regenwürmer österreichs (Oligochaeta: Lumbricidae). Die Bodenkultur 1999, 50:121-131.
    • (1999) Die Bodenkultur , vol.50 , pp. 121-131
    • Christian, E.1    Zicsi, A.2
  • 13
    • 18944399936 scopus 로고    scopus 로고
    • Hungarian Natural History Museum and Systematic Zoology Research Group of the Hungarian Academy of Sciences, Budapest
    • Csuzdi C., Zicsi A. Earthworms of Hungary (Annelida: Oligochaeta, Lumbricidae) 2003, Hungarian Natural History Museum and Systematic Zoology Research Group of the Hungarian Academy of Sciences, Budapest.
    • (2003) Earthworms of Hungary (Annelida: Oligochaeta, Lumbricidae)
    • Csuzdi, C.1    Zicsi, A.2
  • 16
    • 58249100073 scopus 로고    scopus 로고
    • Is a new and general theory of molecular systematics emerging?
    • Edwards S. Is a new and general theory of molecular systematics emerging?. Evolution 2009, 63:1-19.
    • (2009) Evolution , vol.63 , pp. 1-19
    • Edwards, S.1
  • 17
    • 0028528103 scopus 로고
    • DNA primers for amplification of mitochondrial cytochrome c oxidase subunit 1 from diverse metazoan invertebrates
    • Folmer O., Black M., Hoeh W., Lutz R., Vrijenhoek R. DNA primers for amplification of mitochondrial cytochrome c oxidase subunit 1 from diverse metazoan invertebrates. Molecular Marine Biology and Biotechnology 1994, 3:294-299.
    • (1994) Molecular Marine Biology and Biotechnology , vol.3 , pp. 294-299
    • Folmer, O.1    Black, M.2    Hoeh, W.3    Lutz, R.4    Vrijenhoek, R.5
  • 18
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acid Symposium Series 1999, 41:95-98.
    • (1999) Nucleic Acid Symposium Series , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 21
    • 1442289457 scopus 로고    scopus 로고
    • Mitochondrial COII sequences indicate that the parthenogenetic earthworm Octolasion tyrtaeum (Savigny 1826) constitutes of two lineages differing in body size and genotype
    • Heethoff M., Etzhold K., Scheu S. Mitochondrial COII sequences indicate that the parthenogenetic earthworm Octolasion tyrtaeum (Savigny 1826) constitutes of two lineages differing in body size and genotype. Pedobiologia 2004, 48:9-13.
    • (2004) Pedobiologia , vol.48 , pp. 9-13
    • Heethoff, M.1    Etzhold, K.2    Scheu, S.3
  • 23
    • 77954163675 scopus 로고    scopus 로고
    • A sensitive and reliable restriction enzyme assay to distinguish between the mosquitoes Culex torrentium and Culex pipiens
    • Hesson J.C., Lundstrom J.O., Halvarsson P., Erixon P., Collado A. A sensitive and reliable restriction enzyme assay to distinguish between the mosquitoes Culex torrentium and Culex pipiens. Medical and Veterinary Entomology 2010, 24:142-149.
    • (2010) Medical and Veterinary Entomology , vol.24 , pp. 142-149
    • Hesson, J.C.1    Lundstrom, J.O.2    Halvarsson, P.3    Erixon, P.4    Collado, A.5
  • 24
    • 78651307930 scopus 로고    scopus 로고
    • Taxonomy and the mediocrity of DNA barcoding - some remarks on Packer et al. 2009: DNA barcoding and the mediocrity of morphology
    • Holynski R.B. Taxonomy and the mediocrity of DNA barcoding - some remarks on Packer et al. 2009: DNA barcoding and the mediocrity of morphology. Arthropod Systematics & Phylogeny 2010, 68:143-150.
    • (2010) Arthropod Systematics & Phylogeny , vol.68 , pp. 143-150
    • Holynski, R.B.1
  • 25
    • 33845397629 scopus 로고    scopus 로고
    • Molecular identification of wolf spiders (Araneae: Lycosidae) by multiplex polymerase chain reaction
    • Hosseini R., Keller M.A., Schmidt O., Framenau V.W. Molecular identification of wolf spiders (Araneae: Lycosidae) by multiplex polymerase chain reaction. Biological Control 2007, 40:128-135.
    • (2007) Biological Control , vol.40 , pp. 128-135
    • Hosseini, R.1    Keller, M.A.2    Schmidt, O.3    Framenau, V.W.4
  • 26
    • 77953140263 scopus 로고    scopus 로고
    • Congruence between mitochondrial and nuclear DNA: combination of multiple nuclear introns resolves a well supported phylogeny of new world orioles (Icterus)
    • Jacobsen F., Friedmann N.R., Omland K.E. Congruence between mitochondrial and nuclear DNA: combination of multiple nuclear introns resolves a well supported phylogeny of new world orioles (Icterus). Molecular Phylogenetics and Evolution 2010, 56:419-427.
    • (2010) Molecular Phylogenetics and Evolution , vol.56 , pp. 419-427
    • Jacobsen, F.1    Friedmann, N.R.2    Omland, K.E.3
  • 27
    • 78650814386 scopus 로고    scopus 로고
    • DNA barcoding reveals cryptic diversity in Lumbricus terrestris L., 1758 (Clitellata): resurrection of L. herculeus (Savigny, 1826)
    • James S., Porco D., Decaëns T., Richard B., Rougerie R., Erséus C. DNA barcoding reveals cryptic diversity in Lumbricus terrestris L., 1758 (Clitellata): resurrection of L. herculeus (Savigny, 1826). PLoS One 2010, 5:e15629.
    • (2010) PLoS One , vol.5
    • James, S.1    Porco, D.2    Decaëns, T.3    Richard, B.4    Rougerie, R.5    Erséus, C.6
  • 28
    • 0242446008 scopus 로고    scopus 로고
    • Phylogeny of Megascolecidae and Crassiclitellata (Annelida, Oligochaeta): combined versus partitioned analysis using nuclear (28S) and mitochondrial (12S, 16S) rDNA
    • Jamieson B.G.M., Tillier S., Tillier A., Justine J.-L., Ling E., James S., McDonald K., Hugall A.F. Phylogeny of Megascolecidae and Crassiclitellata (Annelida, Oligochaeta): combined versus partitioned analysis using nuclear (28S) and mitochondrial (12S, 16S) rDNA. Zoosystema 2002, 24:707-737.
    • (2002) Zoosystema , vol.24 , pp. 707-737
    • Jamieson, B.G.M.1    Tillier, S.2    Tillier, A.3    Justine, J.-L.4    Ling, E.5    James, S.6    McDonald, K.7    Hugall, A.F.8
  • 29
    • 12944263588 scopus 로고    scopus 로고
    • Detecting predation and scavenging by DNA gut content analysis: a case study using a soil insect predator-prey system
    • Juen A., Traugott M. Detecting predation and scavenging by DNA gut content analysis: a case study using a soil insect predator-prey system. Oecologia 2005, 142:344-352.
    • (2005) Oecologia , vol.142 , pp. 344-352
    • Juen, A.1    Traugott, M.2
  • 30
    • 54849432953 scopus 로고    scopus 로고
    • Opening a can of worms: unprecedented sympatric cryptic diversity within British lumbricid earthworms
    • King R.A., Tibble A.L., Symondson W.O.C. Opening a can of worms: unprecedented sympatric cryptic diversity within British lumbricid earthworms. Molecular Ecology 2008, 17:4684-4698.
    • (2008) Molecular Ecology , vol.17 , pp. 4684-4698
    • King, R.A.1    Tibble, A.L.2    Symondson, W.O.C.3
  • 31
    • 77950240195 scopus 로고    scopus 로고
    • Prey choice by carabid beetles feeding on an earthworm community analysed using species- and lineage-specific PCR primers
    • King R.A., Vaughan I.P., Bell J.R., Bohan D.A., Symondson W.O.C. Prey choice by carabid beetles feeding on an earthworm community analysed using species- and lineage-specific PCR primers. Molecular Ecology 2010, 19:1721-1732.
    • (2010) Molecular Ecology , vol.19 , pp. 1721-1732
    • King, R.A.1    Vaughan, I.P.2    Bell, J.R.3    Bohan, D.A.4    Symondson, W.O.C.5
  • 32
    • 77957014273 scopus 로고    scopus 로고
    • High mitochondrial sequence diversity in the parthenogenetic earthworm Dendrobaena octaedra
    • Knott K.E., Haimi J. High mitochondrial sequence diversity in the parthenogenetic earthworm Dendrobaena octaedra. Heredity 2010, 105:341-347.
    • (2010) Heredity , vol.105 , pp. 341-347
    • Knott, K.E.1    Haimi, J.2
  • 33
    • 33847302458 scopus 로고    scopus 로고
    • Inconsistency of phylogenetic estimates from concatenated data under coalescence
    • Kubatko L.S., Degnan J.H. Inconsistency of phylogenetic estimates from concatenated data under coalescence. Systematic Biology 2007, 56:17-24.
    • (2007) Systematic Biology , vol.56 , pp. 17-24
    • Kubatko, L.S.1    Degnan, J.H.2
  • 34
    • 45949109669 scopus 로고    scopus 로고
    • MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences
    • Kumar S., Nei M., Dudley J., et al. MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences. Brief Bioform 2008, 9:299-306.
    • (2008) Brief Bioform , vol.9 , pp. 299-306
    • Kumar, S.1    Nei, M.2    Dudley, J.3
  • 39
    • 68949083168 scopus 로고    scopus 로고
    • High genetic divergence of hormogastrid earthworms (Annelida, Oligochaeta) in the central Iberian Peninsula: evolutionary and demographic implications
    • Novo M., Almodóvar A., Díaz-Cosín D.J. High genetic divergence of hormogastrid earthworms (Annelida, Oligochaeta) in the central Iberian Peninsula: evolutionary and demographic implications. Zoologica Scripta 2009, 38:537-552.
    • (2009) Zoologica Scripta , vol.38 , pp. 537-552
    • Novo, M.1    Almodóvar, A.2    Díaz-Cosín, D.J.3
  • 43
    • 21744432166 scopus 로고    scopus 로고
    • Phylogenetic species delimitation of the earthworms Eisenia fetida (Savigny, 1826) and Eisenia andrei Bouché, 1972 (Oligochaeta: Lumbricidae) based on mitochondrial a nuclear DNA sequences
    • Pérez-Losada M., Eiroa J., Mato S., Dominguez J. Phylogenetic species delimitation of the earthworms Eisenia fetida (Savigny, 1826) and Eisenia andrei Bouché, 1972 (Oligochaeta: Lumbricidae) based on mitochondrial a nuclear DNA sequences. Pedobiologia 2005, 49:317-324.
    • (2005) Pedobiologia , vol.49 , pp. 317-324
    • Pérez-Losada, M.1    Eiroa, J.2    Mato, S.3    Dominguez, J.4
  • 44
    • 65649145475 scopus 로고    scopus 로고
    • Phylogenetic assessment of the earthworm Aporrectodea caliginosa species complex (Oligochaeta: Lumbricidae) based on mitochondrial and nuclear DNA sequences
    • Pérez-Losada M., Ricoy M., Marshall J., Dominguez J. Phylogenetic assessment of the earthworm Aporrectodea caliginosa species complex (Oligochaeta: Lumbricidae) based on mitochondrial and nuclear DNA sequences. Molecular Phylogenetics and Evolution 2009, 52:293-302.
    • (2009) Molecular Phylogenetics and Evolution , vol.52 , pp. 293-302
    • Pérez-Losada, M.1    Ricoy, M.2    Marshall, J.3    Dominguez, J.4
  • 45
    • 0347930495 scopus 로고    scopus 로고
    • Use of 18S, 16SrDNA, and cytochrome c oxidase sequences in earthworm taxonomy (Oligochaeta, Lumbricidae)
    • Pop A.A., Wink M., Pop V.V. Use of 18S, 16SrDNA, and cytochrome c oxidase sequences in earthworm taxonomy (Oligochaeta, Lumbricidae). Pedobiologia 2003, 47:428-433.
    • (2003) Pedobiologia , vol.47 , pp. 428-433
    • Pop, A.A.1    Wink, M.2    Pop, V.V.3
  • 46
    • 36248941389 scopus 로고    scopus 로고
    • Application of 16S, 18S rDNA and COI sequences in the molecular systematics of the earthworm family Lumbricidae (Annelida, Oligochaeta)
    • Pop A.A., Cech G., Wink M. Application of 16S, 18S rDNA and COI sequences in the molecular systematics of the earthworm family Lumbricidae (Annelida, Oligochaeta). European Journal of Soil Biology 2007, 43:43-52.
    • (2007) European Journal of Soil Biology , vol.43 , pp. 43-52
    • Pop, A.A.1    Cech, G.2    Wink, M.3
  • 47
    • 0031773680 scopus 로고    scopus 로고
    • Modeltest: testing the model of DNA substitution
    • Posada D., Crandall K.A. Modeltest: testing the model of DNA substitution. Bioinformatics 1998, 17:817-818.
    • (1998) Bioinformatics , vol.17 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 49
    • 77954746337 scopus 로고    scopus 로고
    • Re-integrating earthworm juveniles into soil biodiversity studies: species identification through DNA barcoding
    • Richard B., Decaëns T., Rougerie R., et al. Re-integrating earthworm juveniles into soil biodiversity studies: species identification through DNA barcoding. Molecular Ecology Resources 2010, 10:606-614.
    • (2010) Molecular Ecology Resources , vol.10 , pp. 606-614
    • Richard, B.1    Decaëns, T.2    Rougerie, R.3
  • 52
    • 22144455064 scopus 로고    scopus 로고
    • The endangered kiwi: a review
    • Sales J. The endangered kiwi: a review. Folia Zoologica 2005, 54:1-20.
    • (2005) Folia Zoologica , vol.54 , pp. 1-20
    • Sales, J.1
  • 54
    • 0002996010 scopus 로고
    • Oligochaeta: Lumbricidae
    • John Wiley & Sons, New York, D.L. Dindal (Ed.)
    • Schwert D.P. Oligochaeta: Lumbricidae. Soil Biology Guide 1990, 341-356. John Wiley & Sons, New York. D.L. Dindal (Ed.).
    • (1990) Soil Biology Guide , pp. 341-356
    • Schwert, D.P.1
  • 55
    • 0028251187 scopus 로고
    • Evolution, weighting, and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved polymerase chain reaction primers
    • Simon C., Frati F., Beckenbach A. Evolution, weighting, and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved polymerase chain reaction primers. Annales of the Entomological Society of America 1994, 87:651-701.
    • (1994) Annales of the Entomological Society of America , vol.87 , pp. 651-701
    • Simon, C.1    Frati, F.2    Beckenbach, A.3
  • 60
    • 0033832388 scopus 로고    scopus 로고
    • Do earthworms help to sustain the slug predator Pterostichus melanarius (Coleoptera: Carabidae) within crops? Investigation using monoclonal antibodies
    • Symondson W.O.C., Glen D.M., Erickson M.L. Do earthworms help to sustain the slug predator Pterostichus melanarius (Coleoptera: Carabidae) within crops? Investigation using monoclonal antibodies. Molecular Ecology 2000, 9(9):1279-1292.
    • (2000) Molecular Ecology , vol.9 , Issue.9 , pp. 1279-1292
    • Symondson, W.O.C.1    Glen, D.M.2    Erickson, M.L.3
  • 61
    • 0037248597 scopus 로고    scopus 로고
    • The prey spectrum of larval and adult Cantharis species in arable land: an electrophoretic approach
    • Traugott M. The prey spectrum of larval and adult Cantharis species in arable land: an electrophoretic approach. Pedobiologia 2003, 47(2):161-169.
    • (2003) Pedobiologia , vol.47 , Issue.2 , pp. 161-169
    • Traugott, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.