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Volumn 800, Issue , 2012, Pages 133-162

Miniaturized, microarray-based assays for chemical proteomic studies of protein function

Author keywords

Biotin carboxyl carrier protein; Biotinylation; Cytochrome P450; Functional analysis; Inhibitor specificity; Protein kinase; Protein microarray; Proteomics; Surface capture

Indexed keywords

CYTOCHROME P450; IMMOBILIZED PROTEIN; MAPK1 PROTEIN, HUMAN; MITOGEN ACTIVATED PROTEIN KINASE 1; PROTEIN KINASE FES; PROTEIN KINASE INHIBITOR; RECOMBINANT PROTEIN; STREPTAVIDIN;

EID: 80555127376     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-61779-349-3_10     Document Type: Article
Times cited : (12)

References (41)
  • 1
    • 58149203231 scopus 로고    scopus 로고
    • InterPro: The integrative protein signature database (2009)
    • Hunter S, Apweiler R et al. (2009) InterPro: the integrative protein signature database (2009). Nucleic Acids Res. 37: D224-228
    • (2009) Nucleic Acids Res. , vol.37
    • Hunter, S.1    Apweiler, R.2
  • 2
    • 0037177237 scopus 로고    scopus 로고
    • 8-barrel enzymes that catalyze unrelated reactions: Orotidine 5′-monophosphate decarboxylase and 3-keto-L-gulonate 6-phosphate decarboxylase
    • DOI 10.1021/bi012174e
    • Wise EY, Yew WS, Babbitt PC, Gerlt JA, Rayment I (2002) Homologous (b/a)8-Barrel Enzymes That Catalyze Unrelated Reactions: Orotidine 5'-Monophosphate Decarboxylase and 3-Keto-L-Gulonate 6-Phosphate Decarboxylase. Biochemistry 41: 3861-3869 (Pubitemid 34251024)
    • (2002) Biochemistry , vol.41 , Issue.12 , pp. 3861-3869
    • Wise, E.1    Wen, S.Y.2    Babbitt, P.C.3    Gerlt, J.A.4    Rayment, I.5
  • 4
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genome
    • The genome international sequencing consortium
    • The genome international sequencing consortium (2001) Initial sequencing and analysis of the human genome. Nature 409: 860-921
    • (2001) Nature , vol.409 , pp. 860-921
  • 5
    • 0036898579 scopus 로고    scopus 로고
    • Protein microarrays and proteomics
    • MacBeath, G (2002) Protein microarrays and proteomics. Nature Genetics 32: 526-532 (Pubitemid 35435157)
    • (2002) Nature Genetics , vol.32 , Issue.5 SUPPL. DEC. , pp. 526-532
    • MacBeath, G.1
  • 6
    • 70349156763 scopus 로고    scopus 로고
    • Dissecting protein function and signaling using protein microarrays
    • Wolf-Yadlin A, Sevecka M, MacBeath G (2009) Dissecting protein function and signaling using protein microarrays. Current Op Chem Biol 13: 398-405
    • (2009) Current Op Chem Biol , vol.13 , pp. 398-405
    • Wolf-Yadlin, A.1    Sevecka, M.2    MacBeath, G.3
  • 7
    • 3042857301 scopus 로고    scopus 로고
    • Analysis of the effect of clinically-relevant mutations on p53 function using protein microarray technology
    • Boutell JM, Hart DJ, Godber BLJ, Kozlowski RZ, Blackburn JM. (2004) Analysis of the effect of clinically-relevant mutations on p53 function using protein microarray technology. Proteomics 4: 1950-1958
    • (2004) Proteomics , vol.4 , pp. 1950-1958
    • Boutell, J.M.1    Hart, D.J.2    Blj, G.3    Kozlowski, R.Z.4    Blackburn, J.M.5
  • 8
    • 0035072645 scopus 로고    scopus 로고
    • Protein microarrays: Prospects and problems
    • DOI 10.1016/S1074-5521(00)90067-X, PII S1074552100000673
    • Kodadek T (2001) Protein microarrays: prospects and problems. Chem Biol 8:105-115 (Pubitemid 32296105)
    • (2001) Chemistry and Biology , vol.8 , Issue.2 , pp. 105-115
    • Kodadek, T.1
  • 9
    • 1042298833 scopus 로고    scopus 로고
    • Functional protein microarrays: Ripe for discovery
    • DOI 10.1016/j.cbpa.2003.12.005
    • Predki P (2004) Functional protein microarrays: Ripe for discovery. Curr Opin Chem Biol 8: 8-13 (Pubitemid 38201471)
    • (2004) Current Opinion in Chemical Biology , vol.8 , Issue.1 , pp. 8-13
    • Predki, P.F.1
  • 10
    • 0033768106 scopus 로고    scopus 로고
    • Analysis of yeast protein kinases using protein chips
    • Zhu H, Klemic JF, Chang S, Bertone P et al. (2000) Analysis of yeast protein kinases using protein chips. Nat Genet 26: 283-289
    • (2000) Nat Genet , vol.26 , pp. 283-289
    • Zhu, H.1    Klemic, J.F.2    Chang, S.3    Bertone, P.4
  • 13
    • 0041430941 scopus 로고    scopus 로고
    • G protein-coupled receptor microarrays for drug discovery
    • DOI 10.1016/S1359-6446(03)02779-X, PII S135964460302779X
    • Fang Y, Lahiri J, Picard L (2003) G-Proteincoupled receptor microarrays for drug discovery. Drug Discovery Today 8: 755-761 (Pubitemid 37011247)
    • (2003) Drug Discovery Today , vol.8 , Issue.16 , pp. 755-761
    • Fang, Y.1    Lahiri, J.2    Picard, L.3
  • 14
    • 0034622925 scopus 로고    scopus 로고
    • Printing proteins as microarrays for high-throughput function determination
    • MacBeath G, Schreiber SL (2000) Printing proteins as microarrays for high-throughput function determination. Science 289: 1760-1763
    • (2000) Science , vol.289 , pp. 1760-1763
    • MacBeath, G.1    Schreiber, S.L.2
  • 15
    • 0043125601 scopus 로고    scopus 로고
    • Next generation of protein microarray support materials:: Evaluation for protein and antibody microarray applications
    • DOI 10.1016/S0021-9673(03)00769-6
    • Angenendt P, Glokler J, Sobek J, Lehrach H, Cahill DJ (2003) Next generation of protein microarray support materials: Evaluation for protein and antibody microarray applications. J Chromatogr A 1009: 97-104 (Pubitemid 36969803)
    • (2003) Journal of Chromatography A , vol.1009 , Issue.1-2 , pp. 97-104
    • Angenendt, P.1    Glokler, J.2    Sobek, J.3    Lehrach, H.4    Cahill, D.J.5
  • 17
    • 0035430843 scopus 로고    scopus 로고
    • Single step generation of protein arrays from DNA by cell-free expression and in situ immobilization (PISA method)
    • He M, Taussig M (2001) Single step generation of protein arrays from DNA by cell-free expression and in situ immobilization (PISA method). Nucleic Acids Res 29: E73.
    • (2001) Nucleic Acids Res , vol.29
    • He, M.1    Taussig, M.2
  • 21
    • 0029646091 scopus 로고
    • Structure of the biotinyl domain of acetyl-coenzyme A carboxylase determined by MAD phasing
    • DOI 10.1016/S0969-2126(01)00277-5
    • Athappilly FK, Hendrickson WA (1995) Structure of the biotinyl domain of acetylcoenzymeA carboxylase determined by MAD phasing. Structure 3: 1407-19 (Pubitemid 3012268)
    • (1995) Structure , vol.3 , Issue.12 , pp. 1407-1419
    • Athappilly, F.K.1    Hendrickson, W.A.2
  • 22
    • 0033199782 scopus 로고    scopus 로고
    • The enzymatic biotinylation of proteins: A post-translational modification of exceptional specificity
    • DOI 10.1016/S0968-0004(99)01438-3, PII S0968000499014383
    • Chapman-Smith A, Cronan JE (1999) The enzymatic biotinylation of proteins: a post-translational modification of exceptional specificity. Trends Biochem Sci 24: 359-363 (Pubitemid 29421812)
    • (1999) Trends in Biochemical Sciences , vol.24 , Issue.9 , pp. 359-363
    • Chapman-Smith, A.1    Cronan Jr., J.E.2
  • 23
    • 0031473847 scopus 로고    scopus 로고
    • SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modeling
    • DOI 10.1002/elps.1150181505
    • Guex N, Peitsch MC (1997) SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modeling. Electrophoresis 18: 2714-2723 (Pubitemid 28059943)
    • (1997) Electrophoresis , vol.18 , Issue.15 , pp. 2714-2723
    • Guex, N.1    Peitsch, M.C.2
  • 24
  • 25
    • 0017184389 scopus 로고
    • A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding
    • Bradford MM (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72: 248-254
    • (1976) Anal Biochem , vol.72 , pp. 248-254
    • Bradford, M.M.1
  • 29
    • 1942421701 scopus 로고    scopus 로고
    • Pharmacogenetics of cytochrome P450 and its applications in drug therapy: The past, present and future
    • DOI 10.1016/j.tips.2004.02.007, PII S0165614704000550
    • Ingelman-Sundberg M (2004) Pharmacogenetics of cytochrome P450 and its applications in drug therapy: the past, present and future. TRENDS in Pharmacological Sciences 25: 193-200 (Pubitemid 38519910)
    • (2004) Trends in Pharmacological Sciences , vol.25 , Issue.4 , pp. 193-200
    • Ingelman-Sundberg, M.1
  • 30
    • 0042232285 scopus 로고    scopus 로고
    • The biotin carboxylase-biotin carboxyl carrier protein complex of Escherichia coli acetyl-CoA carboxylase
    • DOI 10.1074/jbc.M302507200
    • Choi-Rhee E, Cronan JE (2003) The biotin carboxylase-biotin carboxyl carrier protein complex of Escherichia coli acetyl-CoA carboxylase. J Biol Chem 278: 30806-30812 (Pubitemid 36994588)
    • (2003) Journal of Biological Chemistry , vol.278 , Issue.33 , pp. 30806-30812
    • Choi-Rhee, E.1    Cronan, J.E.2
  • 31
    • 0033819031 scopus 로고    scopus 로고
    • Biotinylation of proteins in vivo and in vitro using small peptide tags
    • Cull MG, Schatz PJ (2000) Biotinylation of proteins in vivo and in vitro using small peptide tags. Methods Enzymol 326: 430-40
    • (2000) Methods Enzymol , vol.326 , pp. 430-440
    • Cull, M.G.1    Schatz, P.J.2
  • 32
    • 0942287129 scopus 로고    scopus 로고
    • Versatile Protein Biotinylation Strategies for Potential High-Throughput Proteomics
    • DOI 10.1021/ja037914g
    • Lue RY, Chen GY, Hu Y, Zhu Q, Yao SQ (2004) Versatile protein biotinylation strategies for potential high-throughput proteomics. J Am Chem Soc 126: 1055-62 (Pubitemid 38140735)
    • (2004) Journal of the American Chemical Society , vol.126 , Issue.4 , pp. 1055-1062
    • Lue, R.Y.P.1    Chen, G.Y.J.2    Hu, Y.3    Zhu, Q.4    Yao, S.Q.5
  • 33
    • 0028346443 scopus 로고
    • Microtubule movement by a biotinated kinesin bound to streptavidin-coated surface
    • Berliner E, Mahtani HK, Karki S, Chu LF, et al. (1994) Microtubule movement by a biotinated kinesin bound to streptavidin-coated surface. J Biol Chem 269: 8610-5
    • (1994) J Biol Chem , vol.269 , pp. 8610-5
    • Berliner, E.1    Mahtani, H.K.2    Karki, S.3    Chu, L.F.4
  • 34
    • 0030570997 scopus 로고    scopus 로고
    • Scintillation proximity assay for human DNA topoisomerase I using recombinant biotinyl-fusion protein produced in baculovirus-infected insect cells
    • DOI 10.1006/abio.1996.0348
    • Lerner CG, Saiki AY (1996) Scintillation proximity assay for human DNA topoisomerase I using recombinant biotinyl-fusion protein produced in baculovirus-infected insect cells. Anal. Biochem 240: 185-96 (Pubitemid 26304262)
    • (1996) Analytical Biochemistry , vol.240 , Issue.2 , pp. 185-196
    • Lerner, C.G.1    Chiang Saiki, A.Y.2
  • 35
    • 0034810850 scopus 로고    scopus 로고
    • Metabolic biotinylation of secreted and cell surface proteins from mammalian cells
    • DOI 10.1006/bbrc.2001.4437
    • Parrott MB, Barry MA (2001) Metabolic biotinylation of secreted and cell surface proteins from mammalian cells. Biochem Biophys Res Commun 281: 993-1000 (Pubitemid 32917830)
    • (2001) Biochemical and Biophysical Research Communications , vol.281 , Issue.4 , pp. 993-1000
    • Parrott M.Brandon1    Barry, M.A.2
  • 36
    • 23244447443 scopus 로고    scopus 로고
    • Strong repulsive forces between protein and oligo (ethylene glycol) self-assembled monolayers: A molecular simulation study
    • DOI 10.1529/biophysj.105.059428
    • Zheng J, Li L, et al (2005) Strong Repulsive Forces between Protein and Oligo (ethylene glycol) Self-Assembled Monolayers: A Molecular Simulation Study. Biophys J. 89: 158-166 (Pubitemid 41098272)
    • (2005) Biophysical Journal , vol.89 , Issue.1 , pp. 158-166
    • Zheng, J.1    Li, L.2    Tsao, H.-K.3    Sheng, Y.-J.4    Chen, S.5    Jiang, S.6
  • 38
    • 3943081412 scopus 로고    scopus 로고
    • Structural aspects of ligand binding to and electron transfer in bacterial and fungal P450s
    • DOI 10.1146/annurev.biochem.73.011303.073711
    • Pylypenko O, Schlichting I (2004) Structural aspects of ligand binding to and electron transfer in bacterial and fungal P450s. Annual Reviews in Biochemistry 73: 991-1018 (Pubitemid 39050392)
    • (2004) Annual Review of Biochemistry , vol.73 , pp. 991-1018
    • Pylypenko, O.1    Schlichting, I.2
  • 41
    • 67651048983 scopus 로고    scopus 로고
    • Development of a fluorescence-based, ultra high-throughput screening platform for nanoliter-scale cytochrome P450 microarrays
    • Sukumaran SM, Potsaid B, Lee M, Clark DS, Dordick JS (2009) Development of a fluorescence-based, ultra high-throughput screening platform for nanoliter-scale cytochrome P450 microarrays. Journal of Biomolecular Screening 14: 668-678
    • (2009) Journal of Biomolecular Screening , vol.14 , pp. 668-678
    • Sukumaran, S.M.1    Potsaid, B.2    Lee, M.3    Clark, D.S.4    Dordick, J.S.5


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