-
1
-
-
1042268168
-
G-Quartets 40 Years Later: From 5′-GMP to Molecular Biology and Supramolecular Chemistry
-
DOI 10.1002/anie.200300589
-
Davis, J.T. (2004) G-quartets 40 years later: from 5′-GMP to molecular biology and supramolecular chemistry. Angew. Chem. Int. Ed. Engl., 43, 668-698. (Pubitemid 38197045)
-
(2004)
Angewandte Chemie - International Edition
, vol.43
, Issue.6
, pp. 668-698
-
-
Davis, J.T.1
-
2
-
-
33751020853
-
Quadruplex DNA: Sequence, topology and structure
-
DOI 10.1093/nar/gkl655
-
Burge, S., Parkinson, G.N., Hazel, P., Todd, A.K. and Neidle, S. (2006) Quadruplex DNA: sequence, topology and structure. Nucleic Acids Res., 34, 5402-5415. (Pubitemid 44742430)
-
(2006)
Nucleic Acids Research
, vol.34
, Issue.19
, pp. 5402-5415
-
-
Burge, S.1
Parkinson, G.N.2
Hazel, P.3
Todd, A.K.4
Neidle, S.5
-
3
-
-
33744780994
-
DNA architecture: from G to Z
-
DOI 10.1016/j.sbi.2006.05.011, PII S0959440X06000820
-
Phan, A.T., Kuryavyi, V. and Patel, D.J. (2006) DNA architecture: from G to Z. Curr. Opin. Struct. Biol., 16, 288-298. (Pubitemid 43831655)
-
(2006)
Current Opinion in Structural Biology
, vol.16
, Issue.3
, pp. 288-298
-
-
Phan, A.T.1
Kuryavyi, V.2
Patel, D.J.3
-
4
-
-
38049030699
-
Human telomere, oncogenic promoter and 5′-UTR G-quadruplexes: Diverse higher order DNA and RNA targets for cancer therapeutics
-
Patel, D.J., Phan, A.T. and Kuryavyi, V. (2007) Human telomere, oncogenic promoter and 5′-UTR G-quadruplexes: diverse higher order DNA and RNA targets for cancer therapeutics. Nucleic Acids Res., 35, 7429-7455.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 7429-7455
-
-
Patel, D.J.1
Phan, A.T.2
Kuryavyi, V.3
-
5
-
-
66549124907
-
The structures of quadruplex nucleic acids and their drug complexes
-
Neidle, S. (2009) The structures of quadruplex nucleic acids and their drug complexes. Curr. Opin. Struct. Biol., 19, 239-250.
-
(2009)
Curr. Opin. Struct. Biol.
, vol.19
, pp. 239-250
-
-
Neidle, S.1
-
6
-
-
76349097100
-
Human telomeric G-quadruplex: Structures of DNA and RNA sequences
-
Phan, A.T. (2010) Human telomeric G-quadruplex: structures of DNA and RNA sequences. FEBS J., 277, 1107-1117.
-
(2010)
FEBS J.
, vol.277
, pp. 1107-1117
-
-
Phan, A.T.1
-
7
-
-
85042639894
-
Helix formation by guanylic acid
-
Gelleert, M., Lipsett, M.N. and Davies, D.R. (1962) Helix formation by guanylic acid. Proc. Natl Acad. Sci. USA, 48, 2013-2018.
-
(1962)
Proc. Natl Acad. Sci. USA
, vol.48
, pp. 2013-2018
-
-
Gelleert, M.1
Lipsett, M.N.2
Davies, D.R.3
-
8
-
-
0026687030
-
Guanine residues in d(T2AG3) and d(T2G4) form parallel-stranded potassium cation stabilized G-quadruplexes with anti glycosidic torsion angles in solution
-
Wang, Y. and Patel, D.J. (1992) Guanine residues in d(T2AG3) and d(T2G4) form parallel-stranded potassium cation stabilized G-quadruplexes with anti glycosidic torsion angles in solution. Biochemistry, 31, 8112-8119.
-
(1992)
Biochemistry
, vol.31
, pp. 8112-8119
-
-
Wang, Y.1
Patel, D.J.2
-
9
-
-
0034737307
-
A dimeric DNA interface stabilized by stacked A.(G.G.G.G).A hexads and coordinated monovalent cations
-
Kettani, A., Gorin, A., Majumdar, A., Hermann, T., Skripkin, E., Zhao, H., Jones, R. and Patel, D.J. (2000) A dimeric DNA interface stabilized by stacked A.(G.G.G.G).A hexads and coordinated monovalent cations. J. Mol. Biol., 297, 627-644.
-
(2000)
J. Mol. Biol.
, vol.297
, pp. 627-644
-
-
Kettani, A.1
Gorin, A.2
Majumdar, A.3
Hermann, T.4
Skripkin, E.5
Zhao, H.6
Jones, R.7
Patel, D.J.8
-
10
-
-
22244464285
-
n) (n = 3-5)
-
DOI 10.1021/ja050191b
-
Kato, Y., Ohyama, T., Mita, H. and Yamamoto, Y. (2005) Dynamics and thermodynamics of dimerization of parallel G-quadruplexed DNA formed from d(TTAGn) (n=3-5). J. Am. Chem. Soc., 127, 9980-9981. (Pubitemid 40995425)
-
(2005)
Journal of the American Chemical Society
, vol.127
, Issue.28
, pp. 9980-9981
-
-
Kato, Y.1
Ohyama, T.2
Mita, H.3
Yamamoto, Y.4
-
11
-
-
67749143935
-
Structure of propeller-type parallel-stranded RNA G-quadruplexes, formed by human telomeric RNA sequences in K+ solution
-
Martadinata, H. and Phan, A.T. (2009) Structure of propeller-type parallel-stranded RNA G-quadruplexes, formed by human telomeric RNA sequences in K+ solution. J. Am. Chem. Soc., 131, 2570-2578.
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 2570-2578
-
-
Martadinata, H.1
Phan, A.T.2
-
12
-
-
48749113418
-
G-quadruplex DNA assemblies: Loop length, cation identity, and multimer formation
-
Smargiasso, N., Rosu, F., Hsia, W., Colson, P., Baker, E.S., Bowers, M.T., De Pauw, E. and Gabelica, V. (2008) G-quadruplex DNA assemblies: Loop length, cation identity, and multimer formation. J. Am. Chem. Soc., 130, 10208-10216.
-
(2008)
J. Am. Chem. Soc.
, vol.130
, pp. 10208-10216
-
-
Smargiasso, N.1
Rosu, F.2
Hsia, W.3
Colson, P.4
Baker, E.S.5
Bowers, M.T.6
De Pauw, E.7
Gabelica, V.8
-
13
-
-
77956428377
-
Tetramolecular DNA quadruplexes in solution: Insights into structural diversity and cation movement
-
Šket, P. and Plavec, J. (2010) Tetramolecular DNA quadruplexes in solution: insights into structural diversity and cation movement. J. Am. Chem. Soc., 132, 12724-12732.
-
(2010)
J. Am. Chem. Soc.
, vol.132
, pp. 12724-12732
-
-
Šket, P.1
Plavec, J.2
-
14
-
-
14144254793
-
An interlocked dimeric parallel-stranded DNA quadruplex: A potent inhibitor of HIV-1 integrase
-
DOI 10.1073/pnas.0406278102
-
Phan, A.T., Kuryavyi, V., Ma, J.-B., Faure, A., Andréla, M.-L. and Patel, D.J. (2005) An interlocked dimeric parallel-stranded DNA quadruplex: a potent inhibitor of HIV-1 integrase. Proc. Natl Acad. Sci. USA, 102, 634-639. (Pubitemid 40282717)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.3
, pp. 634-639
-
-
Phan, A.T.1
Kuryavyi, V.2
Ma, J.-B.3
Faure, A.4
Andreola, M.-L.5
Patel, D.J.6
-
15
-
-
4444285877
-
Formation of an interlocked quadruplex dimer by d(GGGT)
-
DOI 10.1021/ja049259y
-
Krishnan-Ghosh, Y., Liu, D.S. and Balasubramanian, S. (2004) Formation of an interlocked quadruplex dimer by d(GGGT). J. Am. Chem. Soc., 126, 11009-11016. (Pubitemid 39180585)
-
(2004)
Journal of the American Chemical Society
, vol.126
, Issue.35
, pp. 11009-11016
-
-
Krishnan-Ghosh, Y.1
Liu, D.2
Balasubramanian, S.3
-
16
-
-
0035979714
-
V-shaped scaffold: A new architectural motif identified in an A·(G·G·G·G) pentad-containing dimeric DNA quadruplex involving stacked G(anti)·G(anti)·G(anti)·G(syn) tetrads
-
DOI 10.1006/jmbi.2001.4916
-
Zhang, N., Gorin, A., Majumdar, A., Kettani, A., Chernichenko, N., Skripkin, E. and Patel, D.J. (2001) V-shaped scaffold: a new architectural motif identified in an A x (G x G x G x G) pentad-containing dimeric DNA quadruplex involving stacked G(anti) x G(anti) x G(anti) x G(syn) tetrads. J. Mol. Biol., 311, 1063-1079. (Pubitemid 32803721)
-
(2001)
Journal of Molecular Biology
, vol.311
, Issue.5
, pp. 1063-1079
-
-
Zhang, N.1
Gorin, A.2
Majumdar, A.3
Kettani, A.4
Chernichenko, N.5
Skripkin, E.6
Patel, D.J.7
-
17
-
-
0028128406
-
G-wires: Self-assembly of a telomeric oligonucleotide, d(GGGGTTGGGG), into large superstructures
-
Marsh, T.C. and Henderson, E. (1994) G-wires-self-assembly of a telomeric oligonucleotide, d(GGGGTTGGGG), into large superstructures. Biochemistry, 33, 10718-10724. (Pubitemid 24292294)
-
(1994)
Biochemistry
, vol.33
, Issue.35
, pp. 10718-10724
-
-
Marsh, T.C.1
Henderson, E.2
-
18
-
-
46149122709
-
Superstructural self-assembly of the G-quadruplex structure formed by the homopurine strand in a DNA tract of human telomerase gene promoter
-
Pisano, S., Savino, M., Micheli, E., Varra, M., Coppola, T., Mayol, L. and De Santis, P. (2008) Superstructural self-assembly of the G-quadruplex structure formed by the homopurine strand in a DNA tract of human telomerase gene promoter. Biophys. Chem., 136, 159-163.
-
(2008)
Biophys. Chem.
, vol.136
, pp. 159-163
-
-
Pisano, S.1
Savino, M.2
Micheli, E.3
Varra, M.4
Coppola, T.5
Mayol, L.6
De Santis, P.7
-
19
-
-
0023788886
-
Formation of parallel four-stranded complexes by guanine-rich motifs in DNA and its implications for meiosis
-
Sen, D. and Gilbert, W. (1988) Formation of parallel four-stranded complexes by guanine-rich motifs in DNA and its implications for meiosis. Nature, 334, 364-366.
-
(1988)
Nature
, vol.334
, pp. 364-366
-
-
Sen, D.1
Gilbert, W.2
-
20
-
-
0036376018
-
Triplex and quadruplex DNA structures studied by electrospray mass spectrometry
-
DOI 10.1002/rcm.778
-
Rosu, F., Gabelica, V., Houssier, C., Colson, P. and De Pauw, E. (2002) Triplex and quadruplex DNA structures studied by electrospray mass spectrometry. Rapid Commun. Mass Spectrom., 16, 1729-1736. (Pubitemid 35033730)
-
(2002)
Rapid Communications in Mass Spectrometry
, vol.16
, Issue.18
, pp. 1729-1736
-
-
Rosu, F.1
Gabelica, V.2
Houssier, C.3
Colson, P.4
De Pauw, E.5
-
21
-
-
50249134295
-
G-quadruplex formation by human telomeric repeats-containing RNA in Na+ solution
-
Xu, Y., Kaminaga, K. and Komiyama, M. (2008) G-quadruplex formation by human telomeric repeats-containing RNA in Na+ solution. J. Am. Chem. Soc., 130, 11179-11184.
-
(2008)
J. Am. Chem. Soc.
, vol.130
, pp. 11179-11184
-
-
Xu, Y.1
Kaminaga, K.2
Komiyama, M.3
-
22
-
-
77955791968
-
Electrospray mass spectrometry of telomeric RNA (TERRA) reveals the formation of stable multimeric G-quadruplex structures
-
Collie, G.W., Parkinson, G.N., Neidle, S., Rosu, F., De Pauw, E. and Gabelica, V. (2010) Electrospray mass spectrometry of telomeric RNA (TERRA) reveals the formation of stable multimeric G-quadruplex structures. J. Am. Chem. Soc., 132, 9328-9334.
-
(2010)
J. Am. Chem. Soc.
, vol.132
, pp. 9328-9334
-
-
Collie, G.W.1
Parkinson, G.N.2
Neidle, S.3
Rosu, F.4
De Pauw, E.5
Gabelica, V.6
-
23
-
-
0026761859
-
Hairpin and parallel quartet structures for telomeric sequences
-
Balagurumoorthy, P., Brahmachari, S.K., Mohanty, D., Bansal, M. and Sasisekharan, V. (1992) Hairpin and parallel quartet structures for telomeric sequences. Nucleic Acids Res., 20, 4061-4067.
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 4061-4067
-
-
Balagurumoorthy, P.1
Brahmachari, S.K.2
Mohanty, D.3
Bansal, M.4
Sasisekharan, V.5
-
24
-
-
39749116244
-
Measured and calculated CD spectra of G-quartets stacked with the same or opposite polarities
-
DOI 10.1002/chir.20455
-
Gray, D.M., Wen, J.D., Gray, C.W., Repges, R., Repges, C., Raabe, G. and Fleischhauer, J. (2008) Measured and calculated CD spectra of G-quartets stacked with the same or opposite polarities. Chirality, 20, 431-440. (Pubitemid 351303984)
-
(2008)
Chirality
, vol.20
, Issue.3-4
, pp. 431-440
-
-
Gray, D.M.1
Wen, J.-D.2
Gray, C.W.3
Repges, R.4
Repges, C.5
Raabe, G.6
Fleischhauer, J.7
-
25
-
-
71049152800
-
Arrangements of human telomere DNA quadruplex in physiologically relevant K+ solutions
-
Renciuk, D., Kejnovska, I., Skolakova, P., Bednarova, K., Motlova, J. and Vorlickova, M. (2009) Arrangements of human telomere DNA quadruplex in physiologically relevant K+ solutions. Nucleic Acids Res., 37, 6625-6634.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 6625-6634
-
-
Renciuk, D.1
Kejnovska, I.2
Skolakova, P.3
Bednarova, K.4
Motlova, J.5
Vorlickova, M.6
-
26
-
-
70450202380
-
Giardia telomeric sequence d(TAGGG)4 forms two intramolecular G-quadruplexes in K+ solution: Effect of loop length and sequence on the folding topology
-
Hu, L., Lim, K.W., Bouaziz, S. and Phan, A.T. (2009) Giardia telomeric sequence d(TAGGG)4 forms two intramolecular G-quadruplexes in K+ solution: effect of loop length and sequence on the folding topology. J. Am. Chem. Soc., 131, 16824-16831.
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 16824-16831
-
-
Hu, L.1
Lim, K.W.2
Bouaziz, S.3
Phan, A.T.4
-
27
-
-
77956252000
-
Coexistence of two distinct G-quadruplex conformations in the hTERT promoter
-
Lim, K.W., Lacroix, L., Yue, D.J.E., Lim, J.K.C., Lim, J.M.W. and Phan, A.T. (2010) Coexistence of two distinct G-quadruplex conformations in the hTERT promoter. J. Am. Chem. Soc., 132, 12331-12342.
-
(2010)
J. Am. Chem. Soc.
, vol.132
, pp. 12331-12342
-
-
Lim, K.W.1
Lacroix, L.2
Yue, D.J.E.3
Lim, J.K.C.4
Lim, J.M.W.5
Phan, A.T.6
-
28
-
-
0029980523
-
Reconciliation of the X-ray and NMR structures of the thrombin-binding aptamer d(GGTTGGTGTGGTTGG)
-
DOI 10.1006/jmbi.1996.0097
-
Kelly, J.A., Feigon, J. and Yeates, T.O. (1996) Reconciliation of the X-ray and NMR structures of the thrombin-binding aptamer d(G GTTGGTGTGGTTGG). J. Mol. Biol., 256, 417-422. (Pubitemid 26107194)
-
(1996)
Journal of Molecular Biology
, vol.256
, Issue.3
, pp. 417-422
-
-
Kelly, J.A.1
Feigon, J.2
Yeates, T.O.3
-
29
-
-
0036290781
-
Crystal structure of the potassium form of an Oxytricha nova G-quadruplex
-
DOI 10.1016/S0022-2836(02)00428-X
-
Haider, S., Parkinson, G.N. and Neidle, S. (2002) Crystal structure of the potassium form of an Oxytricha nova G-quadruplex. J. Mol. Biol., 320, 189-200. (Pubitemid 34722211)
-
(2002)
Journal of Molecular Biology
, vol.320
, Issue.2
, pp. 189-200
-
-
Haider, S.1
Parkinson, G.N.2
Neidle, S.3
-
30
-
-
0029081052
-
Solution structure of the Oxytricha telomeric repeat d[G4(T4G4)3] G-tetraplex
-
Wang, Y. and Patel, D.J. (1995) Solution structure of the Oxytricha telomeric repeat d[G4(T4G4)3] G-tetraplex. J. Mol. Biol., 251, 76-94.
-
(1995)
J. Mol. Biol.
, vol.251
, pp. 76-94
-
-
Wang, Y.1
Patel, D.J.2
-
31
-
-
0034924446
-
Investigation of unusual DNA motifs
-
DOI 10.1016/S0076-6879(02)38228-4
-
Phan, A.T., Guéon, M. and Leroy, J.L. (2001) Investigation of unusual DNA motifs. Methods Enzymol., 338, 341-371. (Pubitemid 32666587)
-
(2001)
Methods in Enzymology
, vol.338
, pp. 341-371
-
-
Phan, A.-T.1
Gueron, M.2
Leroy, J.-L.3
-
32
-
-
0026575221
-
Selection of single-stranded-DNA molecules that bind and inhibit human thrombin
-
Bock, L.C., Griffin, L.C., Latham, J.A., Vermaas, E.H. and Toole, J.J. (1992) Selection of single-stranded-DNA molecules that bind and inhibit human thrombin. Nature, 355, 564-566.
-
(1992)
Nature
, vol.355
, pp. 564-566
-
-
Bock, L.C.1
Griffin, L.C.2
Latham, J.A.3
Vermaas, E.H.4
Toole, J.J.5
-
33
-
-
0028318093
-
Three-dimensional solution structure of the thrombin-binding DNA aptamer d(GGTTGGTGTGGTTGG)
-
DOI 10.1006/jmbi.1994.1105
-
Schultze, P., Macaya, R.F. and Feigon, J. (1994) Three-dimensional solution structure of the thrombin-binding DNA aptamer d(GGT TGGTGTGGTTGG). J. Mol. Biol., 235, 1532-1547. (Pubitemid 24150403)
-
(1994)
Journal of Molecular Biology
, vol.235
, Issue.5
, pp. 1532-1547
-
-
Schultze, P.1
Macaya, R.F.2
Feigon, J.3
-
34
-
-
0033543548
-
Antiproliferative activity of G-rich oligonucleotides correlates with protein binding
-
Bates, P.J., Kahlon, J.B., Thomas, S.D., Trent, J.O. and Miller, D.M. (1999) Antiproliferative activity of G-rich oligonucleotides correlates with protein binding. J. Biol. Chem., 274, 26369-26377.
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 26369-26377
-
-
Bates, P.J.1
Kahlon, J.B.2
Thomas, S.D.3
Trent, J.O.4
Miller, D.M.5
-
36
-
-
4644325545
-
G-quartet oligonucleotides: A new class of signal transducer and activator of transcription 3 inhibitors that suppresses growth of prostate and breast tumors through induction of apoptosis
-
DOI 10.1158/0008-5472.CAN-03-4041
-
Jing, N., Li, Y., Xiong, W., Sha, W., Jing, L. and Tweardy, D.J. (2004) G-quartet oligonucleotides: a new class of signal transducer and activator of transcription 3 inhibitors that suppresses growth of prostate and breast tumors through induction of apoptosis. Cancer Res., 64, 6603-6609. (Pubitemid 39297920)
-
(2004)
Cancer Research
, vol.64
, Issue.18
, pp. 6603-6609
-
-
Jing, N.1
Li, Y.2
Xiong, W.3
Sha, W.4
Jing, L.5
Tweardy, D.J.6
-
37
-
-
33846192385
-
G-quadruplexes induce apoptosis in tumor cells
-
DOI 10.1158/0008-5472.CAN-06-1225
-
Qi, H., Lin, C.-P., Fu, X., Wood, L.M., Liu, A.A., Tsai, Y.-C., Chen, Y., Barbieri, C.M., Pilch, D.S. and Liu, L.F. (2006) G-quadruplexes induce apoptosis in tumor cells. Cancer Res., 66, 11808-11816. (Pubitemid 46094192)
-
(2006)
Cancer Research
, vol.66
, Issue.24
, pp. 11808-11816
-
-
Qi, H.1
Lin, C.-P.2
Fu, X.3
Wood, L.M.4
Liu, A.A.5
Tsai, Y.-C.6
Chen, Y.7
Barbieri, C.M.8
Pilch, D.S.9
Liu, L.F.10
-
38
-
-
77950495149
-
Cancer-selective antiproliferative activity is a general property of some G-rich oligodeoxynucleotides
-
Choi, E.W., Nayak, L.V. and Bates, P.J. (2010) Cancer-selective antiproliferative activity is a general property of some G-rich oligodeoxynucleotides. Nucleic Acids Res., 38, 1623-1635.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 1623-1635
-
-
Choi, E.W.1
Nayak, L.V.2
Bates, P.J.3
-
39
-
-
0027983025
-
Combinatorially selected guanosine-quartet structure is a potent inhibitor of human immunodeficiency virus envelope-mediated cell fusion
-
Wyatt, J.R., Vickers, T.A., Roberson, J.L., Buckheit, R.W. Jr, Klimkait, T., DeBaets, E., Davis, P.W., Rayner, B., Imbach, J.L. and Ecker, D.J. (1994) Combinatorially selected guanosine-quartet structure is a potent inhibitor of human immunodeficiency virus envelope-mediated cell fusion. Proc. Natl Acad. Sci. USA, 91, 1356-1360. (Pubitemid 24059010)
-
(1994)
Proceedings of the National Academy of Sciences of the United States of America
, vol.91
, Issue.4
, pp. 1356-1360
-
-
Wyatt, J.R.1
Vickers, T.A.2
Roberson, J.L.3
Buckheit Jr., R.W.4
Klimkait, T.5
Debaets, E.6
Davis, P.W.7
Rayner, B.8
Imbach, J.L.9
Ecker, D.J.10
-
40
-
-
0028961595
-
Suppression of human-immunodeficiency-virus type-1 activity in-vitro by oligonucleotides which form intramolecular tetrads
-
Rando, R.F., Ojwang, J., Elbaggari, A., Reyes, G.R., Tinder, R., Mcgrath, M.S. and Hogan, M.E. (1995) Suppression of human-immunodeficiency-virus type-1 activity in-vitro by oligonucleotides which form intramolecular tetrads. J. Biol. Chem., 270, 1754-1760.
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 1754-1760
-
-
Rando, R.F.1
Ojwang, J.2
Elbaggari, A.3
Reyes, G.R.4
Tinder, R.5
McGrath, M.S.6
Hogan, M.E.7
-
41
-
-
0031469736
-
Potassium-induced loop conformational transition of a potent anti-HIV oligonucleotide
-
Jing, N., Gao, X., Rando, R.F. and Hogan, M.E. (1997) Potassium-induced loop conformational transition of a potent anti-HIV oligonucleotide. J. Biomol. Struct. Dyn., 15, 573-585. (Pubitemid 28035868)
-
(1997)
Journal of Biomolecular Structure and Dynamics
, vol.15
, Issue.3
, pp. 573-585
-
-
Jing, N.1
Gao, X.2
Rando, R.F.3
Hogan, M.E.4
-
42
-
-
0034647554
-
Mechanism of inhibition of HIV-1 integrase by G-tetrad-forming oligonucleotides in vitro
-
DOI 10.1074/jbc.M001436200
-
Jing, N.J., Marchand, C., Liu, J., Mitra, R., Hogan, M.E. and Pommier, Y. (2000) Mechanism of inhibition of HIV-1 integrase by G-tetrad-forming oligonucleotides in vitro. J. Biol. Chem., 275, 21460-21467. (Pubitemid 30481849)
-
(2000)
Journal of Biological Chemistry
, vol.275
, Issue.28
, pp. 21460-21467
-
-
Jing, N.1
Marchand, C.2
Liu, J.3
Mitra, R.4
Hogan, M.E.5
Pommier, Y.6
-
43
-
-
0037197675
-
Potassium-dependent folding: A key to intracellular delivery of G-quartet oligonucleotides as HIV inhibitors
-
DOI 10.1021/bi0120401
-
Jing, N., Xiong, W., Guan, Y., Pallansch, L. and Wang, S. (2002) Potassium-dependent folding: a key to intracellular delivery of G-quartet oligonucleotides as HIV inhibitors. Biochemistry, 41, 5397-5403. (Pubitemid 34429373)
-
(2002)
Biochemistry
, vol.41
, Issue.17
, pp. 5397-5403
-
-
Jing, N.1
Xiong, W.2
Guan, Y.3
Pallansch, L.4
Wang, S.5
-
44
-
-
0036436802
-
DNA aptamers derived from HIV-1 RNase H inhibitors are strong anti-integrase agents
-
DOI 10.1016/S0022-2836(02)01064-1
-
de Soultrait, V.R., Lozach, P.Y., Altmeyer, R., Tarrago-Litvak, L., Litvak, S. and Andréla, M.L. (2002) DNA aptamers derived from HIV-1 RNase H inhibitors are strong anti-integrase agents. J. Mol. Biol., 324, 195-203. (Pubitemid 35379020)
-
(2002)
Journal of Molecular Biology
, vol.324
, Issue.2
, pp. 195-203
-
-
De Soultrait, V.R.1
Lozach, P.-Y.2
Altmeyer, R.3
Tarrago-Litvak, L.4
Litvak, S.5
Andreola, M.L.6
-
45
-
-
0035968306
-
HIV integrase, a brief overview from chemistry to therapeutics
-
Craigie, R. (2001) HIV integrase, a brief overview from chemistry to therapeutics. J. Biol. Chem., 276, 23213-23216.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 23213-23216
-
-
Craigie, R.1
-
46
-
-
0038476179
-
Biophysical and biological properties of quadruplex oligodeoxyribonucleotides
-
DOI 10.1093/nar/gkg316
-
Dapić, V., Abdomerović, V., Marrington, R., Peberdy, J., Rodger, A., Trent, J.O. and Bates, P.J. (2003) Biophysical and biological properties of quadruplex oligodeoxyribonucleotides. Nucleic Acids Res., 31, 2097-2107. (Pubitemid 37442077)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.8
, pp. 2097-2107
-
-
Dapic, V.1
Abdomerovic, V.2
Marrington, R.3
Peberdy, J.4
Rodger, A.5
Trent, J.O.6
Bates, P.J.7
-
47
-
-
3242666778
-
Propeller-type parallel-stranded G-quadruplexes in the human c-myc promoter
-
DOI 10.1021/ja048805k
-
Phan, A.T., Modi, Y.S. and Patel, D.J. (2004) Propeller-type parallel-stranded G-quadruplexes in the human c-myc promoter. J. Am. Chem. Soc., 126, 8710-8716. (Pubitemid 38955733)
-
(2004)
Journal of the American Chemical Society
, vol.126
, Issue.28
, pp. 8710-8716
-
-
Phan, A.T.1
Modi, Y.S.2
Patel, D.J.3
-
48
-
-
11444253374
-
Loop-length-dependent folding of G-quadruplexes
-
DOI 10.1021/ja045154j
-
Hazel, P., Huppert, J., Balasubramanian, S. and Neidle, S. (2004) Loop-length-dependent folding of G-quadruplexes. J. Am. Chem. Soc., 126, 16405-16415. (Pubitemid 40081938)
-
(2004)
Journal of the American Chemical Society
, vol.126
, Issue.50
, pp. 16405-16415
-
-
Hazel, P.1
Huppert, J.2
Balasubramanian, S.3
Neidle, S.4
-
49
-
-
34547646128
-
Intramolecular DNA quadruplexes with different arrangements of short and long loops
-
DOI 10.1093/nar/gkm316
-
Rachwal, P.A., Findlow, I.S., Werner, J.M., Brown, T. and Fox, K.R. (2007) Intramolecular DNA quadruplexes with different arrangements of short and long loops. Nucleic Acids Res., 35, 4214-4222. (Pubitemid 47244641)
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.12
, pp. 4214-4222
-
-
Rachwal, P.A.1
Findlow, I.S.2
Werner, J.M.3
Brown, T.4
Fox, K.R.5
-
50
-
-
38849085810
-
A sequence-independent study of the influence of short loop lengths on the stability and topology of intramolecular DNA G-quadraplexes
-
DOI 10.1021/bi701873c
-
Bugaut, A. and Balasubramanian, S. (2008) A sequence-independent study of the influence of short loop lengths on the stability and topology of intramolecular DNA G-quadruplexes. Biochemistry, 47, 689-697. (Pubitemid 351195440)
-
(2008)
Biochemistry
, vol.47
, Issue.2
, pp. 689-697
-
-
Bugaut, A.1
Balasubramanian, S.2
-
51
-
-
43049132871
-
Sequence effects in single-base loops for quadruplexes
-
Guéin, A., De Cian, A., Gros, J., Lacroix, L. and Mergny, J.-L. (2008) Sequence effects in single-base loops for quadruplexes. Biochimie, 90, 686-696.
-
(2008)
Biochimie
, vol.90
, pp. 686-696
-
-
Guéin, A.1
De Cian, A.2
Gros, J.3
Lacroix, L.4
Mergny, J.-L.5
-
52
-
-
41149139667
-
Investigation of formation, recognition, stabilization, and conversion of dimeric G-quadruplexes of HIV-1 integrase inhibitors by electrospray ionization mass spectrometry
-
Li, H., Yuan, G. and Du, D. (2008) Investigation of formation, recognition, stabilization, and conversion of dimeric G-quadruplexes of HIV-1 integrase inhibitors by electrospray ionization mass spectrometry. J. Am. Soc. Mass Spectrom., 19, 550-559.
-
(2008)
J. Am. Soc. Mass Spectrom.
, vol.19
, pp. 550-559
-
-
Li, H.1
Yuan, G.2
Du, D.3
-
53
-
-
77954616527
-
The 3D structures of G-Quadruplexes of HIV-1 integrase inhibitors: Molecular dynamics simulations in aqueous solution and in the gas phase
-
Li, M.H., Zhou, Y.H., Luo, Q. and Li, Z.S. (2010) The 3D structures of G-Quadruplexes of HIV-1 integrase inhibitors: molecular dynamics simulations in aqueous solution and in the gas phase. J. Mol. Model., 16, 645-657.
-
(2010)
J. Mol. Model.
, vol.16
, pp. 645-657
-
-
Li, M.H.1
Zhou, Y.H.2
Luo, Q.3
Li, Z.S.4
-
54
-
-
0014725117
-
Oligonucleotide interactions. 3. Circular dichroism studies of the conformation of deoxyoligonucleotides
-
Cantor, C.R., Warshaw, M.M. and Shapiro, H. (1970) Oligonucleotide interactions. 3. Circular dichroism studies of the conformation of deoxyoligonucleotides. Biopolymers, 9, 1059-1077.
-
(1970)
Biopolymers
, vol.9
, pp. 1059-1077
-
-
Cantor, C.R.1
Warshaw, M.M.2
Shapiro, H.3
-
55
-
-
0026549933
-
Reversal of integration and DNA splicing mediated by integrase of human immunodeficiency virus
-
Chow, S.A., Vincent, K.A., Ellison, V. and Brown, P.O. (1992) Reversal of integration and DNA splicing mediated by integrase of human immunodeficiency virus. Science, 255, 723-726.
-
(1992)
Science
, vol.255
, pp. 723-726
-
-
Chow, S.A.1
Vincent, K.A.2
Ellison, V.3
Brown, P.O.4
-
56
-
-
0037138634
-
13C isotope-labeling approach to unambiguous NMR spectral assignments in nucleic acids
-
DOI 10.1021/ja011977m
-
Phan, A.T. and Patel, D.J. (2002) A site-specific low-enrichment (15)N, (13)C isotope-labeling approach to unambiguous NMR spectral assignments in nucleic acids. J. Am. Chem. Soc., 124, 1160-1161. (Pubitemid 34169110)
-
(2002)
Journal of the American Chemical Society
, vol.124
, Issue.7
, pp. 1160-1161
-
-
Phan, A.T.1
Patel, D.J.2
-
57
-
-
0030661609
-
An efficient and economic site-specific deuteration strategy for NMR studies of homologous oligonucleotide repeat sequences
-
Huang, X.N., Yu, P.L., LeProust, E. and Gao, X.L. (1997) An efficient and economic site-specific deuteration strategy for NMR studies of homologous oligonucleotide repeat sequences. Nucleic Acids Res., 25, 4758-4763. (Pubitemid 27517209)
-
(1997)
Nucleic Acids Research
, vol.25
, Issue.23
, pp. 4758-4763
-
-
Huang, X.1
Yu, P.2
Leproust, E.3
Gao, X.4
-
58
-
-
0034090950
-
13C J-couplings and the through-bond correlation of imino and non-exchangeable protons in unlabeled DNA
-
DOI 10.1023/A:1008355231085
-
Phan, A.T. (2000) Long-range imino proton-13C J-couplings and the through-bond correlation of imino and non-exchangeable protons in unlabeled DNA. J. Biomol. NMR, 16, 175-178. (Pubitemid 30139892)
-
(2000)
Journal of Biomolecular NMR
, vol.16
, Issue.2
, pp. 175-178
-
-
Phan, A.T.1
-
59
-
-
0013293280
-
The Xplor-NIH NMR molecular structure determination package
-
Schwieters, C.D., Kuszewski, J.J., Tjandra, N. and Clore, G.M. (2003) The Xplor-NIH NMR molecular structure determination package. J. Magn. Reson., 160, 65-73.
-
(2003)
J. Magn. Reson.
, vol.160
, pp. 65-73
-
-
Schwieters, C.D.1
Kuszewski, J.J.2
Tjandra, N.3
Clore, G.M.4
-
60
-
-
23444454552
-
The Amber biomolecular simulation programs
-
DOI 10.1002/jcc.20290
-
Case, D.A., Cheatham, T.E., Darden, T., Gohlke, H., Luo, R., Merz, K.M., Onufriev, A., Simmerling, C., Wang, B. and Woods, R.J. (2005) The Amber biomolecular simulation programs. J. Comput. Chem., 26, 1668-1688. (Pubitemid 43076180)
-
(2005)
Journal of Computational Chemistry
, vol.26
, Issue.16
, pp. 1668-1688
-
-
Case, D.A.1
Cheatham III, T.E.2
Darden, T.3
Gohlke, H.4
Luo, R.5
Merz Jr., K.M.6
Onufriev, A.7
Simmerling, C.8
Wang, B.9
Woods, R.J.10
-
62
-
-
0030641357
-
Specific labeling approaches to guanine and adenine imino and amino proton assignments in the AMP-RNA aptamer complex
-
Jiang, F., Patel, D.J., Zhang, X., Zhao, H. and Jones, R.A. (1997) Specific labeling approaches to guanine and adenine imino and amino proton assignments in the AMP-RNA aptamer complex. J. Biomol. NMR, 9, 55-62. (Pubitemid 127507541)
-
(1997)
Journal of Biomolecular NMR
, vol.9
, Issue.1
, pp. 55-62
-
-
Jiang, F.1
Patel, D.J.2
Zhang, X.3
Zhao, H.4
Jones, R.A.5
-
63
-
-
2342570222
-
+ ions
-
DOI 10.1093/nar/gkh269
-
Caceres, C., Wright, G., Gouyette, C., Parkinson, G. and Subirana, J.A. (2004) A thymine tetrad in d(TGGGGT) quadruplexes stabilized with Tl+/Na+ ions. Nucleic Acids Res., 32, 1097-1102. (Pubitemid 38854711)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.3
, pp. 1097-1102
-
-
Caceres, C.1
Wright, G.2
Gouyette, C.3
Parkinson, G.4
Subirana, J.A.5
-
64
-
-
34249062289
-
+ ions
-
DOI 10.1107/S0907444907013315, PII S0907444907013315
-
Creze, C., Rinaldi, B., Haser, R., Bouvet, P. and Gouet, P. (2007) Structure of a d(TGGGGT) quadruplex crystallized in the presence of Li+ions. Acta Crystallogr. D Biol. Crystallogr., 63, 682-688. (Pubitemid 46787693)
-
(2007)
Acta Crystallographica Section D: Biological Crystallography
, vol.63
, Issue.6
, pp. 682-688
-
-
Creze, C.1
Rinaldi, B.2
Haser, R.3
Bouvet, P.4
Gouet, P.5
-
66
-
-
0038681084
-
Crystal structure of an RNA purine-rich tetraplex containing adenine tetrads: Implications for specific binding in RNA tetraplexes
-
DOI 10.1016/S0969-2126(03)00107-2
-
Pan, B.C., Xiong, Y., Shi, K., Deng, J.P. and Sundaralingam, M. (2003) Crystal structure of an RNA purine-rich tetraplex containing adenine tetrads: Implications for specific binding in RNA tetraplexes. Structure, 11, 815-823. (Pubitemid 36830845)
-
(2003)
Structure
, vol.11
, Issue.7
, pp. 815-823
-
-
Pan, B.1
Xiong, Y.2
Shi, K.3
Deng, J.4
Sundaralingam, M.5
-
67
-
-
0037142071
-
Crystal structure of parallel quadruplexes from human telomeric DNA
-
DOI 10.1038/nature755
-
Parkinson, G.N., Lee, M.P.H. and Neidle, S. (2002) Crystal structure of parallel quadruplexes from human telomeric DNA. Nature, 417, 876-880. (Pubitemid 34670337)
-
(2002)
Nature
, vol.417
, Issue.6891
, pp. 876-880
-
-
Parkinson, G.N.1
Lee, M.P.H.2
Neidle, S.3
-
68
-
-
0035914469
-
4 Triplet Repeat DNA with a G:G:G:G Tetrad and a G(:A):G(:A):G(:A):G Heptad, and its Dimeric Interaction
-
DOI 10.1006/jmbi.2001.5047, PII S0022283601950478
-
4 triplet repeat DNA with a G:G:G:G tetrad and a G(:A):G(:A):G(:A):G heptad, and its dimeric interaction. J. Mol. Biol., 313, 255-269. (Pubitemid 33587186)
-
(2001)
Journal of Molecular Biology
, vol.313
, Issue.2
, pp. 255-269
-
-
Matsugami, A.1
Ouhashi, K.2
Kanagawa, M.3
Liu, H.4
Kanagawa, S.5
Uesugi, S.6
Katahira, M.7
-
69
-
-
0042847316
-
Intramolecular higher order packing of parallel quadruplexes comprising a G:G:G:G tetrad and a G(:A):G(:A):G(:A):G heptad of GGA triplet repeat DNA
-
DOI 10.1074/jbc.M303694200
-
Matsugami, A., Okuizumi, T., Uesugi, S. and Katahira, M. (2003) Intramolecular higher order packing of parallel quadruplexes comprising a G:G:G:G tetrad and a G(:A):G(:A):G(:A):G heptad of GGA triplet repeat DNA. J. Biol. Chem., 278, 28147-28153. (Pubitemid 36900013)
-
(2003)
Journal of Biological Chemistry
, vol.278
, Issue.30
, pp. 28147-28153
-
-
Matsugami, A.1
Okuizumi, T.2
Uesugi, S.3
Katahira, M.4
-
70
-
-
80455129678
-
HIV-1 integrase inhibitor T30177 forms a stacked dimeric G-quadruplex structure containing bulges
-
Mukundan, V.T., Do, N.Q. and Phan, A.T. (2011) HIV-1 integrase inhibitor T30177 forms a stacked dimeric G-quadruplex structure containing bulges. Nucleic Acids Res., 39, 8984-8991.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 8984-8991
-
-
Mukundan, V.T.1
Do, N.Q.2
Phan, A.T.3
-
71
-
-
0032567432
-
Structure-activity of tetrad-forming oligonucleotides as a potent anti- HIV therapeutic drug
-
DOI 10.1074/jbc.273.52.34992
-
Jing, N. and Hogan, M.E. (1998) Structure-activity of tetrad-forming oligonucleotides as a potent anti-HIV therapeutic drug. J. Biol. Chem., 273, 34992-34999. (Pubitemid 29028198)
-
(1998)
Journal of Biological Chemistry
, vol.273
, Issue.52
, pp. 34992-34999
-
-
Jing, N.1
Hogan, M.E.2
|