메뉴 건너뛰기




Volumn 20, Issue 3-4, 2008, Pages 431-440

Measured and calculated CD spectra of G-quartets stacked with the same or opposite polarities

Author keywords

Circular dichroism; DNA aptamers; Ff gene 5 protein; G quadruplexes; Matrix method calculations

Indexed keywords

APTAMER; BINDING PROTEIN; BLOOM SYNDROME HELICASE; CHAPERONE; DNA; DNA BINDING PROTEIN; DNA TOPOISOMERASE; FF GENE 5 PROTEIN; HELICASE; IMMUNOGLOBULIN G; NUCLEASE; RESOLVASE; TELOMERE BINDING PROTEIN; THROMBIN; UNCLASSIFIED DRUG; WERNER SYNDROME HELICASE;

EID: 39749116244     PISSN: 08990042     EISSN: 1520636X     Source Type: Journal    
DOI: 10.1002/chir.20455     Document Type: Article
Times cited : (195)

References (74)
  • 1
    • 0023663911 scopus 로고
    • Telomeric DNA oligonucleotides form novel intramolecular structures containing guanine‐guanine base pairs
    • 1 Henderson E, Hardin CC, Walk SK, Tinoco I Jr, Blackburn EH. Telomeric DNA oligonucleotides form novel intramolecular structures containing guanine‐guanine base pairs. Cell 1987 ; 51: 899–908.
    • (1987) Cell , vol.51 , pp. 899-908
    • Henderson, E1    Hardin, CC2    Walk, SK3    Tinoco, I4    Blackburn, EH5
  • 2
    • 0024787884 scopus 로고
    • Monovalent cation‐induced structure of telomeric DNA: The G‐quartet model
    • 2 Williamson JR, Raghuraman MK, Cech TR. Monovalent cation‐induced structure of telomeric DNA: The G‐quartet model. Cell 1989 ; 59: 871–880.
    • (1989) Cell , vol.59 , pp. 871-880
    • Williamson, JR1    Raghuraman, MK2    Cech, TR3
  • 3
    • 0023788886 scopus 로고
    • Formation of parallel four‐stranded complexes by guanine‐rich motifs in DNA and its implications for meiosis
    • 3 Sen D, Gilbert W. Formation of parallel four‐stranded complexes by guanine‐rich motifs in DNA and its implications for meiosis. Nature 1988 ; 334: 364–366.
    • (1988) Nature , vol.334 , pp. 364-366
    • Sen, D1    Gilbert, W2
  • 4
    • 0028362201 scopus 로고
    • The fragile X syndrome d(CGG)n nucleotide repeats form a stable tetrahelical structure
    • 4 Fry M, Loeb LA. The fragile X syndrome d(CGG)n nucleotide repeats form a stable tetrahelical structure. Proc Natl Acad Sci USA 1994 ; 91: 4950–4954.
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 4950-4954
    • Fry, M1    Loeb, LA2
  • 5
    • 0032030327 scopus 로고    scopus 로고
    • DNA tetraplex formation in the control region of c‐myc
    • 5 Simonsson T, Pecinka P, Kubista M. DNA tetraplex formation in the control region of c‐myc. Nucleic Acids Res 1998 ; 26: 1167–1172.
    • (1998) Nucleic Acids Res , vol.26 , pp. 1167-1172
    • Simonsson, T1    Pecinka, P2    Kubista, M3
  • 6
    • 1042268168 scopus 로고    scopus 로고
    • G‐quartets 40 years later: From 5′‐GMP to molecular biology and supramolecular chemistry
    • 6 Davis JT. G‐quartets 40 years later: From 5′‐GMP to molecular biology and supramolecular chemistry. Angew Chem Int Ed 2004 ; 43: 668–698.
    • (2004) Angew Chem Int Ed , vol.43 , pp. 668-698
    • Davis, JT1
  • 8
    • 0027220845 scopus 로고
    • The β subunit of Oxytricha telomere‐binding protein promotes G‐quartet formation by telomeric DNA
    • 8 Fang G, Cech TR. The β subunit of Oxytricha telomere‐binding protein promotes G‐quartet formation by telomeric DNA. Cell 1993 ; 74: 875–885.
    • (1993) Cell , vol.74 , pp. 875-885
    • Fang, G1    Cech, TR2
  • 9
    • 0028146763 scopus 로고
    • Promotion of parallel DNA quadruplexes by a yeast telomere binding protein: a circular dichroism study
    • 9 Giraldo R, Suzuki M, Chapman L, Rhodes D. Promotion of parallel DNA quadruplexes by a yeast telomere binding protein: a circular dichroism study. Proc Natl Acad Sci USA 1994 ; 91: 7658–7662.
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 7658-7662
    • Giraldo, R1    Suzuki, M2    Chapman, L3    Rhodes, D4
  • 10
    • 0033968862 scopus 로고    scopus 로고
    • Yeast meiosis‐specific protein Hop1 binds to G4 DNA and promotes its formation
    • 10 Muniyappa K, Anuradha S, Byers B. Yeast meiosis‐specific protein Hop1 binds to G4 DNA and promotes its formation. Mol Cell Biol 2000 ; 20: 1361–1369.
    • (2000) Mol Cell Biol , vol.20 , pp. 1361-1369
    • Muniyappa, K1    Anuradha, S2    Byers, B3
  • 12
    • 0026533124 scopus 로고
    • Eukaryotic topoisomerase II cleavage of parallel stranded DNA tetraplexes
    • 12 Chung IK, Mehta VB, Spitzner JR, Muller MT. Eukaryotic topoisomerase II cleavage of parallel stranded DNA tetraplexes. Nucleic Acids Res 1992 ; 20: 1973–1977.
    • (1992) Nucleic Acids Res , vol.20 , pp. 1973-1977
    • Chung, IK1    Mehta, VB2    Spitzner, JR3    Muller, MT4
  • 13
    • 0028243751 scopus 로고
    • The yeast KEM1 gene encodes a nuclease specific for G4 tetraplex DNA: implication of in vivo functions for this novel DNA structure
    • 13 Liu Z, Gilbert W. The yeast KEM1 gene encodes a nuclease specific for G4 tetraplex DNA: implication of in vivo functions for this novel DNA structure. Cell 1994 ; 77: 1083–1092.
    • (1994) Cell , vol.77 , pp. 1083-1092
    • Liu, Z1    Gilbert, W2
  • 14
    • 0035940477 scopus 로고    scopus 로고
    • A human nuclease specific for G4 DNA
    • 14 Sun H, Yabuki A, Maizels N. A human nuclease specific for G4 DNA. Proc Natl Acad Sci USA 2001 ; 98: 12444–12449.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 12444-12449
    • Sun, H1    Yabuki, A2    Maizels, N3
  • 15
    • 0033135161 scopus 로고    scopus 로고
    • The Saccharomyces cerevisiae Sgs1 helicase efficiently unwinds G‐G paired DNAs
    • 15 Sun H, Bennett RJ, Maizels N. The Saccharomyces cerevisiae Sgs1 helicase efficiently unwinds G‐G paired DNAs. Nucleic Acids Res 1999 ; 27: 1978–1984.
    • (1999) Nucleic Acids Res , vol.27 , pp. 1978-1984
    • Sun, H1    Bennett, RJ2    Maizels, N3
  • 16
    • 0033617316 scopus 로고    scopus 로고
    • Human Werner syndrome DNA helicase unwinds tetrahelical structures of the fragile X syndrome repeat sequence d(CGG)n
    • 16 Fry M, Loeb LA. Human Werner syndrome DNA helicase unwinds tetrahelical structures of the fragile X syndrome repeat sequence d(CGG)n. J Biol Chem 1999 ; 274: 12797–12802.
    • (1999) J Biol Chem , vol.274 , pp. 12797-12802
    • Fry, M1    Loeb, LA2
  • 17
    • 0032538453 scopus 로고    scopus 로고
    • The Bloom's syndrome helicase unwinds G4 DNA
    • 17 Sun H, Karow JK, Hickson ID, Maizels N. The Bloom's syndrome helicase unwinds G4 DNA. J Biol Chem 1998 ; 273: 27587–27592.
    • (1998) J Biol Chem , vol.273 , pp. 27587-27592
    • Sun, H1    Karow, JK2    Hickson, ID3    Maizels, N4
  • 18
    • 0030808659 scopus 로고    scopus 로고
    • The identification and characterization of a G4‐DNA resolvase activity
    • 18 Harrington C, Lan Y, Akman SA. The identification and characterization of a G4‐DNA resolvase activity. J Biol Chem 1997 ; 272: 24631–24636.
    • (1997) J Biol Chem , vol.272 , pp. 24631-24636
    • Harrington, C1    Lan, Y2    Akman, SA3
  • 19
    • 0030904750 scopus 로고    scopus 로고
    • Sequence‐specific binding protein of single‐stranded and unimolecular quadruplex telomeric DNA from rat hepatocytes
    • 19 Erlitzki R, Fry M. Sequence‐specific binding protein of single‐stranded and unimolecular quadruplex telomeric DNA from rat hepatocytes. J Biol Chem 1997 ; 272: 15881–15890.
    • (1997) J Biol Chem , vol.272 , pp. 15881-15890
    • Erlitzki, R1    Fry, M2
  • 20
    • 0026772525 scopus 로고
    • Myo D binds to the guanine tetrad nucleic acid structure
    • 20 Walsh K, Gualberto A. Myo D binds to the guanine tetrad nucleic acid structure. J Biol Chem 1992 ; 7: 13714–13718.
    • (1992) J Biol Chem , vol.7 , pp. 13714-13718
    • Walsh, K1    Gualberto, A2
  • 21
    • 0027412191 scopus 로고
    • Stabilization of tetrahelical DNA by the quadruplex DNA binding protein QUAD
    • 21 Weisman‐Shomer P, Fry M. Stabilization of tetrahelical DNA by the quadruplex DNA binding protein QUAD. J Biol Chem 1993 ; 268: 3306–3312.
    • (1993) J Biol Chem , vol.268 , pp. 3306-3312
    • Weisman‐Shomer, P1    Fry, M2
  • 22
    • 0035075342 scopus 로고    scopus 로고
    • Functional and dysfunctional roles of quadruplex DNA in cells
    • 22 Arthanari H, Bolton PH. Functional and dysfunctional roles of quadruplex DNA in cells. Chem Biol 2001 ; 8: 221–230.
    • (2001) Chem Biol , vol.8 , pp. 221-230
    • Arthanari, H1    Bolton, PH2
  • 23
    • 0033070196 scopus 로고    scopus 로고
    • Biological implications of the DNA structures associated with disease‐causing triplet repeats
    • 23 Sinden RR. Biological implications of the DNA structures associated with disease‐causing triplet repeats. Am J Hum Genet 1999 ; 64: 346–353.
    • (1999) Am J Hum Genet , vol.64 , pp. 346-353
    • Sinden, RR1
  • 24
    • 0026575221 scopus 로고
    • Selection of single‐stranded DNA molecules that bind and inhibit human thrombin
    • 24 Bock LC, Griffin LC, Latham JA, Vermaas EH, Toole JJ. Selection of single‐stranded DNA molecules that bind and inhibit human thrombin. Nature 1992 ; 355: 564–566.
    • (1992) Nature , vol.355 , pp. 564-566
    • Bock, LC1    Griffin, LC2    Latham, JA3    Vermaas, EH4    Toole, JJ5
  • 25
    • 0015505976 scopus 로고
    • Isolation and characterization of gene 5 protein of filamentous bacterial viruses
    • 25 Alberts B, Frey L, Delius H. Isolation and characterization of gene 5 protein of filamentous bacterial viruses. J Mol Biol 1972 ; 68: 139–152.
    • (1972) J Mol Biol , vol.68 , pp. 139-152
    • Alberts, B1    Frey, L2    Delius, H3
  • 26
    • 0024328846 scopus 로고
    • Three‐dimensional structure of complexes of single‐stranded DNA‐binding proteins with DNA. Ike and fd gene 5 proteins form left‐handed helices with single‐stranded DNA
    • 26 Gray CW. Three‐dimensional structure of complexes of single‐stranded DNA‐binding proteins with DNA. Ike and fd gene 5 proteins form left‐handed helices with single‐stranded DNA. J Mol Biol 1989 ; 208: 57–64.
    • (1989) J Mol Biol , vol.208 , pp. 57-64
    • Gray, CW1
  • 27
    • 0034682883 scopus 로고    scopus 로고
    • Preferential binding of fd gene 5 protein to tetraplex nucleic acid structures
    • 27 Oliver AW, Bogdarina I, Schroeder E, Taylor IA, Kneale GG. Preferential binding of fd gene 5 protein to tetraplex nucleic acid structures. J Mol Biol 2000 ; 301: 575–584.
    • (2000) J Mol Biol , vol.301 , pp. 575-584
    • Oliver, AW1    Bogdarina, I2    Schroeder, E3    Taylor, IA4    Kneale, GG5
  • 28
    • 0035822710 scopus 로고    scopus 로고
    • SELEX selection of high‐affinity oligonucleotides for bacteriophage Ff gene 5 protein
    • 28 Wen J‐D, Gray CW, Gray DM. SELEX selection of high‐affinity oligonucleotides for bacteriophage Ff gene 5 protein. Biochemistry 2001 ; 40: 9300–9310.
    • (2001) Biochemistry , vol.40 , pp. 9300-9310
    • Wen, J‐D1    Gray, CW2    Gray, DM3
  • 29
    • 0038164771 scopus 로고
    • Translational repression in bacteriophage f1: characterization of the gene V protein target on the gene II mRNA
    • 29 Michel B, Zinder ND. Translational repression in bacteriophage f1: characterization of the gene V protein target on the gene II mRNA. Proc Natl Acad Sci USA 1989 ; 86: 4002–4006.
    • (1989) Proc Natl Acad Sci USA , vol.86 , pp. 4002-4006
    • Michel, B1    Zinder, ND2
  • 30
    • 0033137071 scopus 로고    scopus 로고
    • Structural characterization of DNA and RNA sequences recognized by the gene 5 protein of bacteriophage fd
    • 30 Oliver AW, Kneale GG. Structural characterization of DNA and RNA sequences recognized by the gene 5 protein of bacteriophage fd. Biochem J 1999 ; 339: 525–531.
    • (1999) Biochem J , vol.339 , pp. 525-531
    • Oliver, AW1    Kneale, GG2
  • 31
    • 0025194307 scopus 로고
    • Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase
    • 31 Tuerk C, Gold L. Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase. Science 1990 ; 249: 505–510.
    • (1990) Science , vol.249 , pp. 505-510
    • Tuerk, C1    Gold, L2
  • 32
    • 0037167620 scopus 로고    scopus 로고
    • The Ff gene 5 single‐stranded DNA‐binding protein binds to the transiently folded form of an intramolecular G‐quadruplex
    • 32 Wen J‐D, Gray DM. The Ff gene 5 single‐stranded DNA‐binding protein binds to the transiently folded form of an intramolecular G‐quadruplex. Biochemistry 2002 ; 41: 11438–11448.
    • (2002) Biochemistry , vol.41 , pp. 11438-11448
    • Wen, J‐D1    Gray, DM2
  • 33
    • 0036491454 scopus 로고    scopus 로고
    • CD of single‐stranded, double‐stranded, and G‐quartet nucleic acids in complexes with a single‐stranded DNA‐binding protein
    • 33 Gray DM, Gray CW, Mou T‐C, Wen J‐D. CD of single‐stranded, double‐stranded, and G‐quartet nucleic acids in complexes with a single‐stranded DNA‐binding protein. Enantiomer 2002 ; 7: 49–58.
    • (2002) Enantiomer , vol.7 , pp. 49-58
    • Gray, DM1    Gray, CW2    Mou, T‐C3    Wen, J‐D4
  • 34
    • 0026454925 scopus 로고
    • Quadruplex structure of d(G3T4G3) stabilized by K+ or Na+ is an asymmetric hairpin dimer
    • 34 Scaria PV, Shire SJ, Shafer RH. Quadruplex structure of d(G3T4G3) stabilized by K+ or Na+ is an asymmetric hairpin dimer. Proc Natl Acad Sci USA 1992 ; 89: 10336–10340.
    • (1992) Proc Natl Acad Sci USA , vol.89 , pp. 10336-10340
    • Scaria, PV1    Shire, SJ2    Shafer, RH3
  • 35
    • 0028173090 scopus 로고
    • d(G3T4G3) forms an asymmetric diagonally looped dimeric quadruplex with guanosine 5′‐syn‐syn‐anti and 5′‐syn‐anti‐anti N‐glycosidic conformations
    • 35 Smith FW, Lau FW, Feigon J. d(G3T4G3) forms an asymmetric diagonally looped dimeric quadruplex with guanosine 5′‐syn‐syn‐anti and 5′‐syn‐anti‐anti N‐glycosidic conformations. Proc Natl Acad Sci USA 1994 ; 91: 10546–10550.
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 10546-10550
    • Smith, FW1    Lau, FW2    Feigon, J3
  • 36
    • 0028789823 scopus 로고
    • Solution structure of the Na+ form of the dimeric guanine quadruplex [d(G3T4G3)]2
    • 36 Keniry MA, Strahan GD, Owen EA, Shafer RH. Solution structure of the Na+ form of the dimeric guanine quadruplex [d(G 3 T 4 G 3)] 2. Eur J Biochem 1995 ; 233: 631–643.
    • (1995) Eur J Biochem , vol.233 , pp. 631-643
    • Keniry, MA1    Strahan, GD2    Owen, EA3    Shafer, RH4
  • 37
    • 23844438712 scopus 로고    scopus 로고
    • Not so crystal clear: the structure of the human telomere G‐quadruplex in solution differs from that present in a crystal
    • 37 Li J, Correla JJ, Wang L, Trent JO, Chaires JB. Not so crystal clear: the structure of the human telomere G‐quadruplex in solution differs from that present in a crystal. Nucleic Acids Res 2005 ; 33: 4649–4659.
    • (2005) Nucleic Acids Res , vol.33 , pp. 4649-4659
    • Li, J1    Correla, JJ2    Wang, L3    Trent, JO4    Chaires, JB5
  • 38
    • 33747012167 scopus 로고    scopus 로고
    • Characterization of an unusual folding pattern in a catalytically active guanine quadruplex structure
    • 38 Majhi PR, Shafer RH. Characterization of an unusual folding pattern in a catalytically active guanine quadruplex structure. Biopolymers 2006 ; 82: 558–569.
    • (2006) Biopolymers , vol.82 , pp. 558-569
    • Majhi, PR1    Shafer, RH2
  • 39
    • 33846478810 scopus 로고    scopus 로고
    • Electrostatics dominate quadruplex stability
    • 39 Smirnov IV, Shafer RH. Electrostatics dominate quadruplex stability. Biopolymers 2006 ; 85: 91–101.
    • (2006) Biopolymers , vol.85 , pp. 91-101
    • Smirnov, IV1    Shafer, RH2
  • 40
    • 34248160921 scopus 로고    scopus 로고
    • Intramolecular and intermolecular guanine quadruplexes of DNA in aqueous salt and ethanol solutions
    • 40 Vorlickova M, Bednarova K, Kejnovska I, Kypr J. Intramolecular and intermolecular guanine quadruplexes of DNA in aqueous salt and ethanol solutions. Biopolymers 2007 ; 86: 1–10.
    • (2007) Biopolymers , vol.86 , pp. 1-10
    • Vorlickova, M1    Bednarova, K2    Kejnovska, I3    Kypr, J4
  • 41
    • 0031576353 scopus 로고    scopus 로고
    • The crystal structure of a parallel‐stranded guanine tetraplex at 0.95 Å resolution
    • 41 Phillips K, Dauter Z, Murchie AI, Lilley DM, Luisi B. The crystal structure of a parallel‐stranded guanine tetraplex at 0.95 Å resolution. J Mol Biol 1997 ; 273: 171–182.
    • (1997) J Mol Biol , vol.273 , pp. 171-182
    • Phillips, K1    Dauter, Z2    Murchie, AI3    Lilley, DM4    Luisi, B5
  • 42
    • 0016288602 scopus 로고
    • A circular dichroism study of poly dG, poly dC, and poly dG·dC
    • 42 Gray DM, Bollum FJ. A circular dichroism study of poly dG, poly dC, and poly dG·dC. Biopolymers 1974 ; 13: 2087–2102.
    • (1974) Biopolymers , vol.13 , pp. 2087-2102
    • Gray, DM1    Bollum, FJ2
  • 43
    • 0026657684 scopus 로고
    • Thermodynamics and structure of a DNA tetraplex: a spectroscopic and calorimetric study of the tetramolecular complexes of d(TG3T) and d(TG3T2G3T)
    • 43 Jin R, Gaffney BL, Wang C, Jones RA, Breslauer KJ. Thermodynamics and structure of a DNA tetraplex: a spectroscopic and calorimetric study of the tetramolecular complexes of d(TG 3 T) and d(TG 3 T 2 G 3 T). Proc Natl Acad Sci USA 1992 ; 89: 8832–8836.
    • (1992) Proc Natl Acad Sci USA , vol.89 , pp. 8832-8836
    • Jin, R1    Gaffney, BL2    Wang, C3    Jones, RA4    Breslauer, KJ5
  • 44
    • 0026554887 scopus 로고
    • Quadruplex structure of Oxytricha telomeric DNA oligonucleotides
    • 44 Smith FW, Feigon J. Quadruplex structure of Oxytricha telomeric DNA oligonucleotides. Nature 1992 ; 356: 164–168.
    • (1992) Nature , vol.356 , pp. 164-168
    • Smith, FW1    Feigon, J2
  • 45
    • 0026591751 scopus 로고
    • Crystal structure of four‐stranded Oxytricha telomeric DNA
    • 45 Kang C, Zhang X, Ratliff R, Moyzis R, Rich A. Crystal structure of four‐stranded Oxytricha telomeric DNA. Nature 1992 ; 56: 126–131.
    • (1992) Nature , vol.56 , pp. 126-131
    • Kang, C1    Zhang, X2    Ratliff, R3    Moyzis, R4    Rich, A5
  • 46
    • 0027523698 scopus 로고
    • Thermodynamics of G‐tetraplex formation by telomeric DNAs
    • 46 Lu M, Guo Q, Kallenbach NR. Thermodynamics of G‐tetraplex formation by telomeric DNAs. Biochemistry 1993 ; 32: 598–601.
    • (1993) Biochemistry , vol.32 , pp. 598-601
    • Lu, M1    Guo, Q2    Kallenbach, NR3
  • 48
    • 0028173870 scopus 로고
    • G‐quartet structures in telomeric DNA
    • 48 Williamson JR. G‐quartet structures in telomeric DNA. Annu Rev Biophys Biomol Struct 1994 ; 23: 703–730.
    • (1994) Annu Rev Biophys Biomol Struct , vol.23 , pp. 703-730
    • Williamson, JR1
  • 49
    • 0030573027 scopus 로고    scopus 로고
    • Structure‐function correlations of the insulin‐linked polymorphic region
    • 49 Catasti P, Chen X, Moyzis RK, Bradbury EM, Gupta G. Structure‐function correlations of the insulin‐linked polymorphic region. J Mol Biol 1996 ; 264: 534–545.
    • (1996) J Mol Biol , vol.264 , pp. 534-545
    • Catasti, P1    Chen, X2    Moyzis, RK3    Bradbury, EM4    Gupta, G5
  • 50
    • 0014448179 scopus 로고
    • The rotatory properties of molecules containing two peptide groups: Theory
    • 50 Bayley PM, Nielsen EB, Schellman JA. The rotatory properties of molecules containing two peptide groups: Theory. J Phys Chem 1969 ; 73: 228–243.
    • (1969) J Phys Chem , vol.73 , pp. 228-243
    • Bayley, PM1    Nielsen, EB2    Schellman, JA3
  • 51
    • 0033056434 scopus 로고    scopus 로고
    • The binding affinity of Ff gene 5 protein depends on the nearest‐neighbor composition of the ssDNA substrate
    • 51 Mou TC, Gray CW, Gray DM. The binding affinity of Ff gene 5 protein depends on the nearest‐neighbor composition of the ssDNA substrate. Biophys J 1999 ; 76: 1537–1551.
    • (1999) Biophys J , vol.76 , pp. 1537-1551
    • Mou, TC1    Gray, CW2    Gray, DM3
  • 52
    • 0028945546 scopus 로고
    • Absorption and circular dichroism spectroscopy of nucleic acid duplexes and triplexes
    • 52 Gray DM, Hung SH, Johnson KH. Absorption and circular dichroism spectroscopy of nucleic acid duplexes and triplexes. Methods Enzymol 1995 ; 246: 19–34.
    • (1995) Methods Enzymol , vol.246 , pp. 19-34
    • Gray, DM1    Hung, SH2    Johnson, KH3
  • 54
    • 77950831637 scopus 로고
    • Two theorems useful for optical activity calculations, in: Modern quantum chemistry
    • 54 Moscowitz A. Two theorems useful for optical activity calculations. In: Sinanoglu O, editor. Modern quantum chemistry, Vol. 3. New York: Academic Press ; 1965. p 31–44.
    • (1965) , vol.3 , pp. 31-44
    • Moscowitz, A1
  • 55
    • 0030745466 scopus 로고    scopus 로고
    • A theoretical study of the electronic spectra of adenine and guanine
    • 55 Fülscher MP, Serrano‐Andrés L, Roos BO. A theoretical study of the electronic spectra of adenine and guanine. J Am Chem Soc 1997 ; 119: 6168–6176.
    • (1997) J Am Chem Soc , vol.119 , pp. 6168-6176
    • Fülscher, MP1    Serrano‐Andrés, L2    Roos, BO3
  • 56
    • 34250817103 scopus 로고
    • A new mixing of Hartree‐Fock and local density functional theories
    • 56 Becke AD. A new mixing of Hartree‐Fock and local density functional theories. J Chem Phys 1993 ; 98: 1372–1377.
    • (1993) J Chem Phys , vol.98 , pp. 1372-1377
    • Becke, AD1
  • 57
    • 0000189651 scopus 로고
    • Density‐functional thermochemistry. III. The role of exact exchange
    • 57 Becke AD. Density‐functional thermochemistry. III. The role of exact exchange. J Chem Phys 1993 ; 98: 5648–5652.
    • (1993) J Chem Phys , vol.98 , pp. 5648-5652
    • Becke, AD1
  • 58
    • 33751157732 scopus 로고
    • Ab initio calculation of vibrational absorption and circular dichroism spectra using density functional force fields
    • 58 Stephens PJ, Devlin FJ, Chabalowski CF, Frisch MJ. Ab initio calculation of vibrational absorption and circular dichroism spectra using density functional force fields. J Phys Chem 1994 ; 98: 11623–11627.
    • (1994) J Phys Chem , vol.98 , pp. 11623-11627
    • Stephens, PJ1    Devlin, FJ2    Chabalowski, CF3    Frisch, MJ4
  • 59
    • 0039209924 scopus 로고
    • Fully optimized contracted Gaussian basis sets of triple zeta valence quality for atoms Li to Kr
    • 59 Schäfer A, Huber C, Ahlrichs R. Fully optimized contracted Gaussian basis sets of triple zeta valence quality for atoms Li to Kr. J Chem Phys 1994 ; 100: 5829–5835.
    • (1994) J Chem Phys , vol.100 , pp. 5829-5835
    • Schäfer, A1    Huber, C2    Ahlrichs, R3
  • 61
    • 0030570285 scopus 로고    scopus 로고
    • Treatment of electronic excitations within the adiabatic approximation of time dependent density functional theory
    • 61 Bauernschmitt R, Ahlrichs R. Treatment of electronic excitations within the adiabatic approximation of time dependent density functional theory. Chem Phys Lett 1996 ; 256: 454–464.
    • (1996) Chem Phys Lett , vol.256 , pp. 454-464
    • Bauernschmitt, R1    Ahlrichs, R2
  • 63
    • 22744459657 scopus 로고
    • An intermediate neglect of differential overlap technique for spectroscopy: pyrrole and the azines
    • 63 Ridley JE, Zerner MC. An intermediate neglect of differential overlap technique for spectroscopy: pyrrole and the azines. Theor Chim Acta 1973 ; 32: 111–134.
    • (1973) Theor Chim Acta , vol.32 , pp. 111-134
    • Ridley, JE1    Zerner, MC2
  • 64
    • 0012716939 scopus 로고
    • Triplet states via intermediate neglect of differential overlap: benzene, pyridine and the diazines
    • 64 Ridley JE, Zerner MC. Triplet states via intermediate neglect of differential overlap: benzene, pyridine and the diazines. Theor Chim Acta 1976 ; 42: 223–236.
    • (1976) Theor Chim Acta , vol.42 , pp. 223-236
    • Ridley, JE1    Zerner, MC2
  • 65
    • 0001926888 scopus 로고    scopus 로고
    • Theoretical approach to electronic optical activity, in: Circular dichroism principles and applications
    • 65 Koslowski A, Sreerama N, Woody RW. Theoretical approach to electronic optical activity. In: Berova N, Nakanishi K, Woody RW, editors. Circular dichroism principles and applications, 2nd ed. New York: Wiley ; 2000. p 55–95. The programs DZDO and MCD3SP were written by Downing JW and Michl J (University of Colorado at Boulder) and modified by Fleischhauer J, Schleker W, and Kramer B.
    • (2000) , pp. 55-95
    • Koslowski, A1    Sreerama, N2    Woody, RW3
  • 66
    • 11344251006 scopus 로고
    • Electronic absorption, polarized excitation, and circular dichroism spectra of [5]‐helicene (dibenzo[c,g]phenanthrene)
    • 66 Brown A, Kemp CM, Mason SF. Electronic absorption, polarized excitation, and circular dichroism spectra of [5]‐helicene (dibenzo[ c,g ]phenanthrene). J Chem Soc A 1971 ; 751–755.
    • (1971) J Chem Soc A , pp. 751-755
    • Brown, A1    Kemp, CM2    Mason, SF3
  • 67
    • 0026767395 scopus 로고
    • Circular dichroism spectroscopy of DNA
    • 67 Gray DM, Ratliff RL, Vaughan MR. Circular dichroism spectroscopy of DNA. Methods Enzymol 1992 ; 211: 389–406.
    • (1992) Methods Enzymol , vol.211 , pp. 389-406
    • Gray, DM1    Ratliff, RL2    Vaughan, MR3
  • 68
    • 0028024737 scopus 로고
    • The high‐resolution crystal structure of a parallel‐stranded guanine tetraplex
    • 68 Laughlan G, Murchie AI, Norman DG, Moore MH, Moody PC, Lilley DM, Luisi B. The high‐resolution crystal structure of a parallel‐stranded guanine tetraplex. Science 1994 ; 265: 520–524.
    • (1994) Science , vol.265 , pp. 520-524
    • Laughlan, G1    Murchie, AI2    Norman, DG3    Moore, MH4    Moody, PC5    Lilley, DM6    Luisi, B7
  • 69
    • 0037107823 scopus 로고    scopus 로고
    • Circular dichroism spectra of DNA quadruplexes [d(G5T5)]4 as formed with G4 and T4 tetrads and [d(G5T5)·d(A5C5)]2 as formed with Watson‐Crick‐like (G‐C)2 and (T‐A)2 tetrads
    • 69 Ito H, Tanaka S, Miyasaka M. Circular dichroism spectra of DNA quadruplexes [d(G 5 T 5)] 4 as formed with G 4 and T 4 tetrads and [d(G 5 T 5)·d(A 5 C 5)] 2 as formed with Watson‐Crick‐like (G‐C) 2 and (T‐A) 2 tetrads. Biopolymers (Biospectroscopy) 2002 ; 65: 61–80.
    • (2002) Biopolymers (Biospectroscopy) , vol.65 , pp. 61-80
    • Ito, H1    Tanaka, S2    Miyasaka, M3
  • 70
    • 0034194110 scopus 로고    scopus 로고
    • Structures of the potassium‐saturated, 2:1, and intermediate, 1:1, forms of a quadruplex DNA
    • 70 Marathias VM, Bolton PH. Structures of the potassium‐saturated, 2:1, and intermediate, 1:1, forms of a quadruplex DNA. Nucleic Acids Res 2000 ; 28: 1969–1977.
    • (2000) Nucleic Acids Res , vol.28 , pp. 1969-1977
    • Marathias, VM1    Bolton, PH2
  • 71
    • 0027537022 scopus 로고
    • A DNA aptamer which binds to and inhibits thrombin exhibits a new structural motif for DNA
    • 71 Wang KY, McCurdy S, Shea RG, Swamainathan S, Bolton PH. A DNA aptamer which binds to and inhibits thrombin exhibits a new structural motif for DNA. Biochemistry 1993 ; 32: 1899–1904.
    • (1993) Biochemistry , vol.32 , pp. 1899-1904
    • Wang, KY1    McCurdy, S2    Shea, RG3    Swamainathan, S4    Bolton, PH5
  • 72
    • 0027172294 scopus 로고
    • The structure of α‐thrombin inhibited by a 15‐mer single‐stranded DNA aptamer
    • 72 Padmanabhan K, Padmanabhan KP, Ferrara JD, Sadler JE, Tulinsky A. The structure of α‐thrombin inhibited by a 15‐mer single‐stranded DNA aptamer. J Biol Chem 1993 ; 268: 17651–17654.
    • (1993) J Biol Chem , vol.268 , pp. 17651-17654
    • Padmanabhan, K1    Padmanabhan, KP2    Ferrara, JD3    Sadler, JE4    Tulinsky, A5
  • 73
    • 0028318093 scopus 로고
    • Three‐dimensional solution structure of the thrombin‐binding DNA aptamer d(GGTTGGTGTGGTT GG)
    • 73 Schultze P, Macaya RF, Feigon J. Three‐dimensional solution structure of the thrombin‐binding DNA aptamer d(GGTTGGTGTGGTT GG). J Mol Biol 1994 ; 235: 1532–1547.
    • (1994) J Mol Biol , vol.235 , pp. 1532-1547
    • Schultze, P1    Macaya, RF2    Feigon, J3
  • 74
    • 0029980523 scopus 로고    scopus 로고
    • Reconciliation of the X‐ray and NMR structures of the thrombin‐binding aptamer d(GGTTGGTGTGGTT GG)
    • 74 Kelly JA, Feigon J, Yeates TO. Reconciliation of the X‐ray and NMR structures of the thrombin‐binding aptamer d(GGTTGGTGTGGTT GG). J Mol Biol 1996 ; 256: 417–422.
    • (1996) J Mol Biol , vol.256 , pp. 417-422
    • Kelly, JA1    Feigon, J2    Yeates, TO3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.