Characterization of non-specific cytotoxic cell receptor protein 1: A new member of the lectin-type subfamily of F-box proteins

PLoS ONE

Volumn 6, Issue 11, 2011, Pages

  Kallio, Heini ^a,b   Tolvanen, Martti ^a   Jänis, Janne ^c   Pan, Pei wen ^a,b   Laurila, Eeva ^a   Kallioniemi, Anne ^a,b   Kilpinen, Sami ^d   Tuominen, Vilppu J ^a   Isola, Jorma ^a   Valjakka, Jarkko ^a   Pastorekova, Silvia ^e   Pastorek, Jaromir ^e   Parkkila, Seppo ^a,b  

^a TAMPERE UNIVERSITY OF TECHNOLOGY   (Finland)

^b TAMPERE UNIVERSITY HOSPITAL   (Finland)

^c UNIVERSITY OF EASTERN FINLAND   (Finland)

^d MediSapiens Ltd   (Finland)

^e INSTITUTE OF VIROLOGY   (Slovakia)

Author keywords

[No Author keywords available]

Indexed keywords

CARBONATE DEHYDRATASE IX; CELL PROTEIN; CYTOTOXIC CELL RECEPTOR PROTEIN 1; F BOX PROTEIN; LECTIN; MESSENGER RNA; SMALL INTERFERING RNA; UBIQUITIN PROTEIN LIGASE E3; UNCLASSIFIED DRUG; CA9 PROTEIN, HUMAN; CARBONATE DEHYDRATASE; LYMPHOCYTE ANTIGEN RECEPTOR; NONSPECIFIC CYTOTOXIC CELL RECEPTOR PROTEIN 1; TUMOR ANTIGEN; UBIQUITIN PROTEIN LIGASE;

ANIMAL TISSUE; ARTICLE; CELL GROWTH; COMPLEX FORMATION; CONTROLLED STUDY; ESCHERICHIA COLI; GENE SILENCING; GENOME ANALYSIS; GROWTH INHIBITION; HUMAN; HUMAN CELL; HUMAN TISSUE; IMMUNOHISTOCHEMISTRY; MASS SPECTROMETRY; MOUSE; NONHUMAN; NUCLEOTIDE SEQUENCE; PROTEIN DETERMINATION; PROTEIN DOMAIN; PROTEIN EXPRESSION; PROTEIN LOCALIZATION; RNA SEQUENCE; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; SIGNAL TRANSDUCTION; STRUCTURE ANALYSIS; ANIMAL; BIOLOGY; GENETICS; HELA CELL; METABOLISM; PHYLOGENY; PHYSIOLOGY; TISSUE DISTRIBUTION;

ESCHERICHIA COLI; MUS; VERTEBRATA;

ANIMALS; ANTIGENS, NEOPLASM; CARBONIC ANHYDRASES; COMPUTATIONAL BIOLOGY; F-BOX PROTEINS; HELA CELLS; HUMANS; LECTINS; MICE; PHYLOGENY; RECEPTORS, ANTIGEN; RNA, MESSENGER; TISSUE DISTRIBUTION; UBIQUITIN-PROTEIN LIGASES;

EID: 80455131347     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0027152     Document Type: Article

References (34)

1. Hilvo M, Baranauskiene L, Salzano AM, Scaloni A, Matulis D, et al. (2008) Biochemical characterization of CA IX, one of the most active carbonic anhydrase isozymes. J Biol Chem 283: 27799-27809.
2. Alterio V, Hilvo M, Di Fiore A, Supuran CT, Pan P, et al. (2009) Crystal structure of the catalytic domain of the tumor-associated human carbonic anhydrase IX. Proc Natl Acad Sci U S A 106: 16233-16238.
3. Neri D, Supuran CT, (2011) Interfering with pH regulation in tumours as a therapeutic strategy. Nat Rev Drug Discov 10: 767-777.
4. Pastorekova S, Zavada J, (2004) Carbonic anhydrase IX (CA IX) as a potential target for cancer therapy. Cancer Therapy 2: 245-262.
5. Ortova Gut MO, Parkkila S, Vernerova Z, Rohde E, Zavada J, et al. (2002) Gastric hyperplasia in mice with targeted disruption of the carbonic anhydrase gene Car9. Gastroenterology 123: 1889-1903.
6. Kallio H, Hilvo M, Rodriguez A, Lappalainen EH, Lappalainen AM, et al. (2010) Global transcriptional response to carbonic anhydrase IX deficiency in the mouse stomach. BMC Genomics 11: 397.
7. Jaso-Friedmann L, Leary JH 3rd, Evans DL, (1997) NCCRP-1: a novel receptor protein sequenced from teleost nonspecific cytotoxic cells. Mol Immunol 34: 955-965.
8. Evans DL, Leary JH 3rd, Jaso-Friedmann L, (1998) Nonspecific cytotoxic cell receptor protein-1: a novel (predicted) type III membrane receptor on the teleost equivalent of natural killer cells recognizes conventional antigen. Cell Immunol 187: 19-26.
9. Ishimoto Y, Savan R, Endo M, Sakai M, (2004) Non-specific cytotoxic cell receptor (NCCRP)-1 type gene in tilapia (Oreochromis niloticus): its cloning and analysis. Fish Shellfish Immunol 16: 163-172.
10. Cuesta A, Esteban MA, Meseguer J, (2005) Molecular characterization of the nonspecific cytotoxic cell receptor (NCCRP-1) demonstrates gilthead seabream NCC heterogeneity. Dev Comp Immunol 29: 637-650.
11. Sakata H, Savan R, Sogabe R, Kono T, Taniguchi K, et al. (2005) Cloning and analysis of non-specific cytotoxic cell receptor (NCCRP)-1 from common carp Cyprinus carpio L. Comp Biochem Physiol C Toxicol Pharmacol 140: 287-294.
12. Jaso-Friedmann L, Peterson DS, Gonzalez DS, Evans DL, (2002) The antigen receptor (NCCRP-1) on catfish and zebrafish nonspecific cytotoxic cells belongs to a new gene family characterized by an F-box-associated domain. J Mol Evol 54: 386-395.
13. Jaso-Friedmann L, Leary JH 3rd, Evans DL, (2001) The non-specific cytotoxic cell receptor (NCCRP-1): molecular organization and signaling properties. Dev Comp Immunol 25: 701-711.
14. Kipreos ET, Pagano M, (2000) The F-box protein family. Genome Biol 1: REVIEWS3002.
15. Glenn KA, Nelson RF, Wen HM, Mallinger AJ, Paulson HL, (2008) Diversity in tissue expression, substrate binding, and SCF complex formation for a lectin family of ubiquitin ligases. J Biol Chem 283: 12717-12729.
16. Reimers K, Abu Qarn M, Allmeling C, Bucan V, Vogt PM, (2006) Identification of the non-specific cytotoxic cell receptor protein 1 (NCCRP1) in regenerating axolotl limbs. J Comp Physiol B 176: 599-605.
17. Mizushima T, Yoshida Y, Kumanomidou T, Hasegawa Y, Suzuki A, et al. (2007) Structural basis for the selection of glycosylated substrates by SCF(Fbs1) ubiquitin ligase. Proc Natl Acad Sci U S A 104: 5777-5781.
18. Yoshida Y, (2007) F-box proteins that contain sugar-binding domains. Biosci Biotechnol Biochem 71: 2623-2631.
19. Zhang L, Hou Y, Wang M, Wu B, Li N, (2009) A study on the functions of ubiquitin metabolic system related gene FBG2 in gastric cancer cell line. J Exp Clin Cancer Res 28: 78.
20. Flicek P, Aken BL, Ballester B, Beal K, Bragin E, et al. (2010) Ensembl's 10th year. Nucleic Acids Res 38: D557-562.
21. Jain E, Bairoch A, Duvaud S, Phan I, Redaschi N, et al. (2009) Infrastructure for the life sciences: design and implementation of the UniProt website. BMC Bioinformatics 10: 136.
22. Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Sayers EW, (2011) GenBank. Nucleic Acids Res 39: D32-37.
23. Pruitt KD, Tatusova T, Klimke W, Maglott DR, (2009) NCBI Reference Sequences: current status, policy and new initiatives. Nucleic Acids Res 37: D32-36.
24. Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
25. Thompson JD, Higgins DG, Gibson TJ, (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680.
26. Katoh K, Kuma K, Toh H, Miyata T, (2005) MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res 33: 511-518.
27. Hunter S, Apweiler R, Attwood TK, Bairoch A, Bateman A, et al. (2009) InterPro: the integrative protein signature database. Nucleic Acids Res 37: D211-215.
28. Emanuelsson O, Brunak S, von Heijne G, Nielsen H, (2007) Locating proteins in the cell using TargetP, SignalP and related tools. Nat Protoc 2: 953-971.
29. Cheng J, Sweredoski M, Baldi P, (2005) Accurate Prediction of Protein Disordered Regions by Mining Protein Structure Data. Data Mining and Knowledge Discovery 11: 213-222.
30. Tamura K, Dudley J, Nei M, Kumar S, (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24: 1596-1599.
31. Bootorabi F, Janis J, Valjakka J, Isoniemi S, Vainiotalo P, et al. (2008) Modification of carbonic anhydrase II with acetaldehyde, the first metabolite of ethanol, leads to decreased enzyme activity. BMC Biochem 9: 32.
32. Pastorekova S, Zavadova Z, Kostal M, Babusikova O, Zavada J, (1992) A novel quasi-viral agent, MaTu, is a two-component system. Virology 187: 620-626.
33. Kilpinen S, Autio R, Ojala K, Iljin K, Bucher E, et al. (2008) Systematic bioinformatic analysis of expression levels of 17,330 human genes across 9,783 samples from 175 types of healthy and pathological tissues. Genome Biol 9: R139.
34. Autio R, Kilpinen S, Saarela M, Kallioniemi O, Hautaniemi S, et al. (2009) Comparison of Affymetrix data normalization methods using 6,926 experiments across five array generations. BMC Bioinformatics 10 (Suppl 1): S24.