메뉴 건너뛰기




Volumn 8, Issue 10, 2011, Pages 3041-3051

Distribution of typical denitrifying functional genes and diversity of the nirS-encoding bacterial community related to environmental characteristics of river sediments

Author keywords

[No Author keywords available]

Indexed keywords

CANONICAL ANALYSIS; CORRESPONDENCE ANALYSIS; DENITRIFICATION; DISSOLVED INORGANIC NITROGEN; ENVIRONMENTAL CONDITIONS; FLUVIAL DEPOSIT; MICROBIAL COMMUNITY; NITRATE; POLYMERASE CHAIN REACTION; SEDIMENT CORE; SEWAGE; SPATIAL DISTRIBUTION; SPECIES DIVERSITY;

EID: 80455131213     PISSN: 17264170     EISSN: 17264189     Source Type: Journal    
DOI: 10.5194/bg-8-3041-2011     Document Type: Article
Times cited : (64)

References (60)
  • 1
    • 80455136007 scopus 로고
    • edited by: Petrov, B. N. and Csaki, F., Second international symposium of information theory, Akademiai Kiado, Budapest, Hungary
    • Akaike, H.: Information theory as an extension of the maximum likelihood principle, edited by: Petrov, B. N. and Csaki, F., Second international symposium of information theory, Akademiai Kiado, Budapest, Hungary, 1973.
    • (1973) Information Theory as an Extension of the Maximum Likelihood Principle
    • Akaike, H.1
  • 3
    • 0031687820 scopus 로고    scopus 로고
    • Development of PCR primer systems for amplification of nitrite reductase genes (nirK and nirS) to detect denitrifying bacteria in environmental samples
    • Braker, G., Fesefeldt, A., and Witzel, K. P.: Development of PCR primer systems for amplification of nitrite reductase genes (nirK and nirS) to detect denitrifying bacteria in environmental samples, Appl. Environ. Microb., 64, 3769-3775, 1998. (Pubitemid 28462971)
    • (1998) Applied and Environmental Microbiology , vol.64 , Issue.10 , pp. 3769-3775
    • Braker, G.1    Fesefeldt, A.2    Witzel, K.-P.3
  • 4
    • 52949152827 scopus 로고    scopus 로고
    • Sediment denitrifier community composition and nirS gene expression investigated with functional gene microarrays
    • Bulow, S. E., Francis, C. A., Jackson, G. A., and Ward, B. B.: Sediment denitrifier community composition and nirS gene expression investigated with functional gene microarrays, Environ. Microb., 10, 3057-3069, 2008.
    • (2008) Environ. Microb. , vol.10 , pp. 3057-3069
    • Bulow, S.E.1    Francis, C.A.2    Jackson, G.A.3    Ward, B.B.4
  • 5
    • 33847682276 scopus 로고    scopus 로고
    • Have we overemphasized the role of denitrification in aquatic ecosystems? A review of nitrate removal pathways
    • DOI 10.1890/1540-9295(2007)5[89:HWOTRO]2.0.CO;2
    • Burgin, A. J. and Hamilton, S. K.: Have we overemphasized the role of denitrification in aquatic ecosystems? A review of nitrate removal pathways, Front. Ecol. Environ., 5, 89-96, 2007. (Pubitemid 46363885)
    • (2007) Frontiers in Ecology and the Environment , vol.5 , Issue.2 , pp. 89-96
    • Burgin, A.J.1    Hamilton, S.K.2
  • 6
  • 7
    • 77957744758 scopus 로고    scopus 로고
    • The evolution and future of earth's nitrogen cycle
    • Canfield, D. E., Glazer, A. N., and Falkowski, P. G.: The evolution and future of earth's nitrogen cycle, Science, 330, 192, 2010.
    • (2010) Science , vol.330 , pp. 192
    • Canfield, D.E.1    Glazer, A.N.2    Falkowski, P.G.3
  • 8
    • 0036205618 scopus 로고    scopus 로고
    • Microheterogeneity in 16S ribosomal DNA-defined bacterial populations from a stratified planktonic environment is related to temporal changes and to ecological adaptations
    • DOI 10.1128/AEM.68.4.1706-1714.2002
    • Casamayor, E. O., Pedrós-Alió, C., Muyzer, G., and Amann, R.: Microheterogeneity in 16S rDNA-defined bacterial populations from a stratified planktonic environment is related to temporal changes and to ecological adaptations, Appl. Environ Microbiol., 68, 1706-1714, 2002. (Pubitemid 34279978)
    • (2002) Applied and Environmental Microbiology , vol.68 , Issue.4 , pp. 1706-1714
    • Casamayor, E.O.1    Pedros-Alio, C.2    Muyzer, G.3    Amann, R.4
  • 9
    • 23944451594 scopus 로고    scopus 로고
    • Communities of nirS-type denitrifiers in the water column of the oxygen minimum zone in the eastern South Pacific
    • DOI 10.1111/j.1462-2920.2005.00809.x
    • Castro-Gonázlez, M., Braker, G., Farias, L., and Ulloa, O.: Communities of nirS-type denitrifiers in the water column of oxygen minimum zone in the eastern South Pacific, Environ. Microb., 7, 1298-1306, 2005. (Pubitemid 41204924)
    • (2005) Environmental Microbiology , vol.7 , Issue.9 , pp. 1298-1306
    • Castro-Gonzalez, M.1    Braker, G.2    Farias, L.3    Ulloa, O.4
  • 10
    • 29144533404 scopus 로고    scopus 로고
    • Anaerobic degradation of benzene, toluene, ethylbenzene, and xylene compounds by Dechloromonas strain RCB
    • DOI 10.1128/AEM.71.12.8649-8655.2005
    • Chakraborty, R., O'Connor, S. M., Chan, E., and Coates, J. D.: Anaerobic degradation of benzene, toluene, ethylbenzene, and xylene compounds by Dechloromonas Strain RCB, Appl. Environ. Microb., 71, 8649-8655, 2005. (Pubitemid 41804000)
    • (2005) Applied and Environmental Microbiology , vol.71 , Issue.12 , pp. 8649-8655
    • Chakraborty, R.1    O'Connor, S.M.2    Chan, E.3    Coates, J.D.4
  • 11
    • 78650243205 scopus 로고    scopus 로고
    • Abundance of denitrifying genes coding for nitrate (narG) nitrite (nirS) and nitrous oxide (nosZ) reductases in estuarine versus wastewater effluent-fed constructed wetlands
    • Chon, K., Chang, J., Lee, E., Lee, J., Ryu, J., and Cho, J.: Abundance of denitrifying genes coding for nitrate (narG), nitrite (nirS), and nitrous oxide (nosZ) reductases in estuarine versus wastewater effluent-fed constructed wetlands, Ecol. Eng., 37, 64-69, 2011.
    • (2011) Ecol. Eng. , vol.37 , pp. 64-69
    • Chon, K.1    Chang, J.2    Lee, E.3    Lee, J.4    Ryu, J.5    Cho, J.6
  • 12
    • 18144382963 scopus 로고    scopus 로고
    • Anaerobic ammonium oxidation (anammox) in the marine environment
    • DOI 10.1016/j.resmic.2005.01.011
    • Dalsgaard, T., Thamdrup, B, and Canfield, D. E.: Anaerobic ammonium oxidation (anammox) in the marine environment, Res. Microbiol., 156, 457-464, 2005. (Pubitemid 40615411)
    • (2005) Research in Microbiology , vol.156 , Issue.4 , pp. 457-464
    • Dalsgaard, T.1    Thamdrup, B.2    Canfield, D.E.3
  • 13
    • 51149114568 scopus 로고    scopus 로고
    • Diversity and spatial distribution of sediment ammonia-oxidizing crenarchaeota in response to estuarine and environmental gradients in the Changjiang Estuary and East China Sea
    • Dang, H., Zhang, X., Sun, J., and Li, T.: Diversity and spatial distribution of sediment ammonia-oxidizing crenarchaeota in response to estuarine and environmental gradients in the Changjiang Estuary and East China Sea, Microbiol., 154, 2084-2095, 2008.
    • (2008) Microbiol. , vol.154 , pp. 2084-2095
    • Dang, H.1    Zhang, X.2    Sun, J.3    Li, T.4
  • 14
    • 67649223265 scopus 로고    scopus 로고
    • Diversity and distribution of sediment nirS-encoding bacterial assemblages in response to environmental gradients in eutrophied Jiaozhou Bay, China
    • Dang, H., Wang, C., Li, J., Li, T., Tian, F., Jin, W., Ding, Y., and Zhang, Z.: Diversity and distribution of sediment nirS-encoding bacterial assemblages in response to environmental gradients in eutrophied Jiaozhou Bay, China, Microb. Ecol., 58, 161-169, 2009.
    • (2009) Microb. Ecol. , vol.58 , pp. 161-169
    • Dang, H.1    Wang, C.2    Li, J.3    Li, T.4    Tian, F.5    Jin, W.6    Ding, Y.7    Zhang, Z.8
  • 16
    • 34447129589 scopus 로고    scopus 로고
    • Seasonal and diel distributions of denitrifying and bacterial communities in a hypersaline microbial mat (Camargue, France)
    • DOI 10.1016/j.watres.2007.04.018, PII S0043135407002771
    • Desnues, C., Michotey, V., Wieland, A., Zhizang, C., Fourcans, A., Duran, R., and Bonin, P.: Seasonal and diel distributions of denitrifying and bacterial communities in a hypersaline microbial mat (Camargue, France), Water Res., 41, 3407-3419, 2007. (Pubitemid 47033937)
    • (2007) Water Research , vol.41 , Issue.15 , pp. 3407-3419
    • Desnues, C.1    Michotey, V.D.2    Wieland, A.3    Zhizang, C.4    Fourcans, A.5    Duran, R.6    Bonin, P.C.7
  • 17
    • 56249089306 scopus 로고    scopus 로고
    • Denitrification potential and its relation to organic carbon quality in three coastal wetland soils
    • Dodla, S. K.,Wang, J. J., Delaune, R. D., and Cook, R. L.: Denitrification potential and its relation to organic carbon quality in three coastal wetland soils, Sci. Tot. Environ., 407, 471-480, 2008.
    • (2008) Sci. Tot. Environ. , vol.407 , pp. 471-480
    • Dodla, S.K.1    Wang, J.J.2    Delaune, R.D.3    Cook, R.L.4
  • 18
    • 66249110685 scopus 로고    scopus 로고
    • Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Clone Estuary, United Kingdom)
    • Dong, L. F., Smith, C. J., Papaspyrou, S., Stott, A., Osborn, A. M., and Nedwell, D. B.: Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Clone Estuary, United Kingdom), Appl. Environ. Microb., 75, 3171-3179, 2009.
    • (2009) Appl. Environ. Microb. , vol.75 , pp. 3171-3179
    • Dong, L.F.1    Smith, C.J.2    Papaspyrou, S.3    Stott, A.4    Osborn, A.M.5    Nedwell, D.B.6
  • 19
    • 34248332108 scopus 로고    scopus 로고
    • NirS-containing denitrifier communities in the water column and sediment of the Baltic Sea
    • Falk, S., Hannig, M., Gliesche, C., Wardenga, R., Köster, M., Jürgens, K., and Braker, G.: nirS-containing denitrifier communities in the water column and sediment of the Baltic Sea, Biogeosciences, 4, 255-268, doi:10.5194/bg-4-255-2007, 2007. (Pubitemid 46742034)
    • (2007) Biogeosciences , vol.4 , Issue.3 , pp. 255-268
    • Falk, S.1    Hannig, M.2    Gliesche, C.3    Wardenga, R.4    Koster, M.5    Jurgens, K.6    Braker, G.7
  • 20
    • 33748451449 scopus 로고    scopus 로고
    • Distribution of nitrogenous nutrients and denitrifiers strains in estuarine sediment profiles of the Tanshui River, northern Taiwan
    • DOI 10.1016/j.ecss.2006.05.016, PII S0272771406002149
    • Fan, L. F., Shieh, W. Y., Wu, W. F., and Chen, C. P.: Distribution of nitrogenous nutrients and denitrifiers strains in estuarine sediment profiles of the Tanshui River, northern Taiwan, Estuar. Coast. Shelf. S., 69, 543-553, 2006. (Pubitemid 44353898)
    • (2006) Estuarine, Coastal and Shelf Science , vol.69 , Issue.3-4 , pp. 543-553
    • Fan, L.F.1    Shieh, W.Y.2    Wu, W.F.3    Chen, C.-P.4
  • 21
    • 66749176141 scopus 로고    scopus 로고
    • Development of the quantitative PCR method for Candidatus "Accumulibacter phosphatis" and its application to activated sludge
    • Fukushima, T., Uda, N., Okamoto, M., Satoh, H., and Mino, T.: Development of the quantitative PCR method for Candidatus "Accumulibacter phosphatis" and its application to activated sludge, J. Water Environ. Technol., 5, 37-43, 2007.
    • (2007) J. Water Environ. Technol. , vol.5 , pp. 37-43
    • Fukushima, T.1    Uda, N.2    Okamoto, M.3    Satoh, H.4    Mino, T.5
  • 22
    • 0027238091 scopus 로고
    • Copper containing nitrite reductases from Pseudomonas aureofaciens is functional in mutationally cytochrome cd1-free background (NirS-) of Pseudomonas stutzeri
    • Glockner, A., Jüngst, A., and Zumft, W.: Copper containing nitrite reductases from Pseudomonas aureofaciens is functional in mutationally cytochrome cd1-free background (NirS-) of Pseudomonas stutzeri, Arch. Microbiol., 160, 2136-2141, 1993.
    • (1993) Arch. Microbiol. , vol.160 , pp. 2136-2141
    • Glockner, A.1    Jüngst, A.2    Zumft, W.3
  • 23
    • 77958157017 scopus 로고    scopus 로고
    • Correlations between in situ denitrification activity and nir-gene abundances in pristine and impacted prairie streams
    • Graham, D., Trippett, C., Dodds, W., O'Brien, J., Banner, E., Head, I., Smith, M., Yang, R., and Knapp, C.: Correlations between in situ denitrification activity and nir-gene abundances in pristine and impacted prairie streams, Environ. Pollut., 158, 3225-3229, 2010.
    • (2010) Environ. Pollut. , vol.158 , pp. 3225-3229
    • Graham, D.1    Trippett, C.2    Dodds, W.3    O'Brien, J.4    Banner, E.5    Head, I.6    Smith, M.7    Yang, R.8    Knapp, C.9
  • 24
    • 80053324134 scopus 로고    scopus 로고
    • Characterization of depth-related bacterial communities and their relationships with the environmental factors in the river sediments
    • Huang, S., Chen, C., Wu, Y., Wu, Q., and Zhang, R.: Characterization of depth-related bacterial communities and their relationships with the environmental factors in the river sediments, World J. Microbiol. Biotechnol., 27, 2655-2664, 2011.
    • (2011) World J. Microbiol. Biotechnol. , vol.27 , pp. 2655-2664
    • Huang, S.1    Chen, C.2    Wu, Y.3    Wu, Q.4    Zhang, R.5
  • 25
    • 0035861456 scopus 로고    scopus 로고
    • Bayesian inference of phylogeny and its impact on evolutionary biology
    • DOI 10.1126/science.1065889
    • Huelsenbeck, J. P., Ronquist, F. R., Nielsen, R., and Bollback, J. P.: Bayesian inference of phylogeny and its impact on evolutionary biology, Science, 294, 2310-2314, 2001. (Pubitemid 33140548)
    • (2001) Science , vol.294 , Issue.5550 , pp. 2310-2314
    • Huelsenbeck, J.P.1    Ronquist, F.2    Nielsen, R.3    Bollback, J.P.4
  • 27
    • 67449123106 scopus 로고    scopus 로고
    • Spatial heterogeneity of denitrification genes in a highly homogenous urban stream
    • Knapp, C., Dodds, W., Wilson, K., O'Brien, J., and Graham, D.: Spatial heterogeneity of denitrification genes in a highly homogenous urban stream, Environ. Sci. Technol., 43, 4273-4279, 2009.
    • (2009) Environ. Sci. Technol. , vol.43 , pp. 4273-4279
    • Knapp, C.1    Dodds, W.2    Wilson, K.3    O'Brien, J.4    Graham, D.5
  • 29
    • 77149128974 scopus 로고    scopus 로고
    • Nitrous oxide production kinetics during nitrate reduction in river sediments
    • Laverman, A. M., Garnier, J. A., Mounier, E. M., and Roose-Amsaleg, C. L.: Nitrous oxide production kinetics during nitrate reduction in river sediments, Water Res., 44, 1753-1764, 2010.
    • (2010) Water Res. , vol.44 , pp. 1753-1764
    • Laverman, A.M.1    Garnier, J.A.2    Mounier, E.M.3    Roose-Amsaleg, C.L.4
  • 31
    • 38649135375 scopus 로고    scopus 로고
    • Dynamics of nitrous oxide reductase genes (nosZ) in intertidal rocky biofilms and sediments of the Douro River estuary (Portugal), and their relation to N-biogeochemistry
    • DOI 10.1007/s00248-007-9273-7
    • Magalhães, C., Bano, N., Wiebe, W. J., Bordalo, A. A., and Hollibaugh, J. T.: Dynamics of nitrous oxide reductase genes (nosZ) in intertidal rocky biofilms and sediments of the Douro River Estuary (Portugal), and their relation to N-biogeochemistry, Microb. Ecol., 55, 259-269, 2008. (Pubitemid 351171467)
    • (2008) Microbial Ecology , vol.55 , Issue.2 , pp. 259-269
    • Magalhaes, C.1    Bano, N.2    Wiebe, W.J.3    Bordalo, A.A.4    Hollibaugh, J.T.5
  • 32
    • 74449087436 scopus 로고    scopus 로고
    • Anaerobic bio-removal of uranium (VI) and chromium (VI): Comparison of microbial community structure
    • Martins, M., Faleiro, M. L., Chaves, S., Tenreiro, R., Santos, E., and Costa, M.: Anaerobic bio-removal of uranium (VI) and chromium (VI): Comparison of microbial community structure, J. Hazard Mater., 176, 1062-1072, 2010.
    • (2010) J. Hazard Mater. , vol.176 , pp. 1062-1072
    • Martins, M.1    Faleiro, M.L.2    Chaves, S.3    Tenreiro, R.4    Santos, E.5    Costa, M.6
  • 33
    • 27844484656 scopus 로고    scopus 로고
    • Complete genome sequence of the facultative anaerobic magnetotactic bacterium Magnetospirillum sp. strain AMB-1
    • DOI 10.1093/dnares/dsi002
    • Matsunaga, T., Okamura, Y., Fukuda, Y., Wahyudi, A. T., Murase, Y., and Takeyama, H.: Complete genome sequence of the facultative anaerobic magnetotactic bacterium Magnetospirillum sp. strain AMB-1, DNA Res., 12, 157-166, 2005. (Pubitemid 43731361)
    • (2005) DNA Research , vol.12 , Issue.3 , pp. 157-166
    • Matsunaga, T.1    Okamura, Y.2    Fukuda, Y.3    Wahyudi, A.T.4    Murase, Y.5    Takeyama, H.6
  • 34
    • 43049172152 scopus 로고    scopus 로고
    • Nitrification and denitrification as sources of sediment nitrous oxide production: A microsensor approach
    • Meyer, R. L., Allen, D. E., and Schmidt, S.: Nitrification and denitrification as sources of sediment nitrous oxide production: A microsensor approach, Mar. Chem., 110, 68-76, 2008.
    • (2008) Mar. Chem. , vol.110 , pp. 68-76
    • Meyer, R.L.1    Allen, D.E.2    Schmidt, S.3
  • 35
    • 0028976712 scopus 로고
    • Genetic comparisons reveal the same unknown bacterial lineages in Atlantic and Pacific bacterioplankton communities
    • Mullins, T. D., Britschgi, T. B., Krest, R. L., and Giovannoni, S. J.: Genetic comparisons reveal the same unknown bacterial lineages in Atlantic and Pacific bacterioplankton communities, Limnol. Oceanogr., 40, 148-158, 1995.
    • (1995) Limnol. Oceanogr. , vol.40 , pp. 148-158
    • Mullins, T.D.1    Britschgi, T.B.2    Krest, R.L.3    Giovannoni, S.J.4
  • 36
    • 0036793715 scopus 로고    scopus 로고
    • Detection and diversity of expressed denitrification genes in estuarine sediments after reverse transcription-PCR amplification from mRNA
    • DOI 10.1128/AEM.68.10.5017-5025.2002
    • Nogales, B., Timmis, K. N., Nedwell, D. B., and Osborn, A. M.: Detection and diversity of expressed denitrification genes in estuarine sediments after reverse transcription-PCR amplification from mRNA, Appl. Environ. Microb., 68, 5017-5025, 2002. (Pubitemid 35154813)
    • (2002) Applied and Environmental Microbiology , vol.68 , Issue.10 , pp. 5017-5025
    • Nogales, B.1    Timmis, K.N.2    Nedwell, D.B.3    Osborn, A.M.4
  • 38
    • 33846074002 scopus 로고    scopus 로고
    • Analysis of nitrite reductase (nirK and nirS) genes and cultivation reveal depauperate community of denitrifying bacteria in the Black Sea suboxic zone
    • DOI 10.1111/j.1462-2920.2006.01121.x
    • Oakley, B. B., Francis, C. A., Roberts, K. J., Fuchsman, C. A., Srinivasan, S., and Staley, J. T.: Analysis of nitrite reductase (nirK and nirS) genes and cultivation reveal depauperate community of denitrifying bacteria in the Black Sea suboxic zone, Environ. Microbiol., 9, 118-130, 2007. (Pubitemid 46059004)
    • (2007) Environmental Microbiology , vol.9 , Issue.1 , pp. 118-130
    • Oakley, B.B.1    Francis, C.A.2    Roberts, K.J.3    Fuchsman, C.A.4    Srinivasan, S.5    Staley, J.T.6
  • 39
    • 33748714124 scopus 로고    scopus 로고
    • Identification of acetate- or methanol-assimilating bacteria under nitrate-reducing conditions by stable-isotope probing
    • DOI 10.1007/s00248-006-9071-7
    • Osaka, T., Yoshie, S., Tsuneda, S., Hirata, A., Iwami, N., and Inamori, Y.: Identification of acetate-or methanol-assimilating bacteria under nitrate-reducing conditions by stable-isotope probing, Microb. Ecol., 52, 253-266, 2006. (Pubitemid 44392980)
    • (2006) Microbial Ecology , vol.52 , Issue.2 , pp. 253-266
    • Osaka, T.1    Yoshie, S.2    Tsuneda, S.3    Hirata, A.4    Iwami, N.5    Inamori, Y.6
  • 40
    • 0036203309 scopus 로고    scopus 로고
    • Diversity of nitrite reductase (nirK and nirS) gene fragments in forested upland and wetland soils
    • DOI 10.1128/AEM.68.4.1893-1900.2002
    • Priemé, A., Braker, G., and Tiedje, J. M.: Diversity of nitrite reductase (nirK and nirS) gene fragments in forested upland and wetland soils, Appl. Environ. Microb., 68, 1893-1900, 2002. (Pubitemid 34279998)
    • (2002) Applied and Environmental Microbiology , vol.68 , Issue.4 , pp. 1893-1900
    • Prieme, A.1    Braker, G.2    Tiedje, J.M.3
  • 41
    • 77955300661 scopus 로고    scopus 로고
    • Available at, last access: 5 March 2010
    • Rambaut, A. and Drummond, A. J.: Tracer v1.5, Available at http://beast.bio.ed.ac.uk/Tracer, last access: 5 March 2010, 2009.
    • (2009) Tracer v1.5
    • Rambaut, A.1    Drummond, A.J.2
  • 42
    • 77949918053 scopus 로고    scopus 로고
    • Identification and quantification of a novel nitrate-reducing community in sediments of Suquía River basin along a nitrate gradient
    • Reyna, L., Wunderlin, D. A., and Genti-Raimondi, S.: Identification and quantification of a novel nitrate-reducing community in sediments of Suquía River basin along a nitrate gradient, Environ. Pollut., 158, 1608-1614, 2010.
    • (2010) Environ. Pollut. , vol.158 , pp. 1608-1614
    • Reyna, L.1    Wunderlin, D.A.2    Genti-Raimondi, S.3
  • 44
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • DOI 10.1093/bioinformatics/btg180
    • Ronquist, F. R. and Huelsenbeck, J. P.: MrBayes 3: Bayesian phylogenetic inference under mixed models, Bioinformatics, 19, 1572-1574, 2003. (Pubitemid 37038874)
    • (2003) Bioinformatics , vol.19 , Issue.12 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 45
    • 38949103345 scopus 로고    scopus 로고
    • Diversity of the nitrite reductase gene nirS in the sediment of a free-water surface constructed wetland
    • DOI 10.2436/20.1501.01.34
    • Ruiz-Rueda, O., Trias, R., Garcia-Gil, L. J., and Bañeras, L.: Diversity of the nitrite reductase gene nirS in the sediment of a freewater surface constructed wetland, Int. Microbiol., 10, 253-260, 2007. (Pubitemid 351214579)
    • (2007) International Microbiology , vol.10 , Issue.4 , pp. 253-260
    • Ruiz-Rueda, O.1    Trias, R.2    Garcia-Gil, L.J.3    Baneras, L.4
  • 47
    • 0027337255 scopus 로고
    • Nitrification and denitrificaiton in lake and estuarine sediments measured by the 15N dilution technique and isotope pairing
    • Rysgaard, S., Risgaard-Petersen, N., Nielsen, L. P., and Revsbech, N. P.: Nitrification and denitrificaiton in lake and estuarine sediments measured by the 15N dilution technique and isotope pairing, Appl. Environ. Microb., 59, 2093-2098, 1993.
    • (1993) Appl. Environ. Microb. , vol.59 , pp. 2093-2098
    • Rysgaard, S.1    Risgaard-Petersen, N.2    Nielsen, L.P.3    Revsbech, N.P.4
  • 48
    • 0032080514 scopus 로고    scopus 로고
    • Nitrous oxide reductase (nosZ) gene-specific PCR primers for detection of denitrifiers and three nosZ genes from marine sediments
    • DOI 10.1016/S0378-1097(98)00103-7, PII S0378109798001037
    • Scala, D. J. and Kerkhof, L. J., Nitrous oxide reductase (nosZ) genespecific PCR primers for detection of denitrifiers and three nosZ genes from marine sediments, FEMS Microbiol. Lett., 162, 61-68, 1998. (Pubitemid 28218730)
    • (1998) FEMS Microbiology Letters , vol.162 , Issue.1 , pp. 61-68
    • Scala, D.J.1    Kerkhof, L.J.2
  • 49
    • 15444362001 scopus 로고    scopus 로고
    • Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness
    • DOI 10.1128/AEM.71.3.1501-1506.2005
    • Schloss, P. D. and Handelsman, J.: Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness, Appl. Environ. Microb., 71, 1501-1506, 2005. (Pubitemid 40396689)
    • (2005) Applied and Environmental Microbiology , vol.71 , Issue.3 , pp. 1501-1506
    • Schloss, P.D.1    Handelsman, J.2
  • 50
    • 0043009827 scopus 로고    scopus 로고
    • 2-based lithoautotrophy and anaerobiosis
    • DOI 10.1016/S0022-2836(03)00894-5
    • Schwartz, E., Henne, A., Cramm, R., Eitinger, T., Friedrich, B., and Gottschalk, G.: Complete nucleotide sequence of pHG1: A Ralstonia eutropha H16 megaplasmid enconding key enzymes of H2-based lithoautotrophy and anaerobiosis, J. Mol. Biol., 332, 369-383, 2003. (Pubitemid 37013506)
    • (2003) Journal of Molecular Biology , vol.332 , Issue.2 , pp. 369-383
    • Schwartz, E.1    Henne, A.2    Cramm, R.3    Eitinger, T.4    Friedrich, B.5    Gottschalk, G.6
  • 51
    • 38349022151 scopus 로고    scopus 로고
    • Denitrification, dissimilatory nitrate reduction to ammonium, and nitrogen fixation along a nitrate concentration gradient in a created freshwater wetland
    • Scott, J. T., McCarthy, M. J., Gardner,W. S., and Doyle, R. D.: Denitrification, dissimilatory nitrate reduction to ammonium, and nitrogen fixation along a nitrate concentration gradient in a created freshwater wetland, Biogeochemistry, 87, 99-111, 2008.
    • (2008) Biogeochemistry , vol.87 , pp. 99-111
    • Scott, J.T.1    McCarthy, M.J.2    Gardner, W.S.3    Doyle, R.D.4
  • 52
    • 34249864562 scopus 로고    scopus 로고
    • Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments
    • DOI 10.1128/AEM.02894-06
    • Smith, C. J., Nedwell, D. B., Dong, L. F., and Osborn, A. M.: Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments, Appl. Environ. Microb., 73, 3612-3622, 2007. (Pubitemid 46871451)
    • (2007) Applied and Environmental Microbiology , vol.73 , Issue.11 , pp. 3612-3622
    • Smith, C.J.1    Nedwell, D.B.2    Dong, L.F.3    Osborn, A.M.4
  • 53
    • 34547810329 scopus 로고    scopus 로고
    • Identification and isolation of a Castellaniella species important during biostimulation of an acidic nitrate- and uranium-contaminated aquifer
    • DOI 10.1128/AEM.00331-07
    • Spain, A. M., Peacock, A. D., Istok, J. D., Elshahed M. S., Najar, F. Z., Roe, B. A., White, D. C., and Krumholz, L. R.: Identification and isolation of a Castellaniella species important during biostimulation of an acidic nitrate-and uranium-contaminated aquifer, Appl. Environ. Microb., 73, 4892-904, 2007. (Pubitemid 47237238)
    • (2007) Applied and Environmental Microbiology , vol.73 , Issue.15 , pp. 4892-4904
    • Spain, A.M.1    Peacock, A.D.2    Istok, J.D.3    Elshahed, M.S.4    Najar, F.Z.5    Roe, B.A.6    White, D.C.7    Krumholz, L.R.8
  • 54
    • 67651001835 scopus 로고    scopus 로고
    • Comprehensive analyses of transport proteins encoded within the genome of "Aromatoleum aromaticum" strain EbN1
    • Tamang, D. G., Rabus, R., Barabote, R. D., and Saier Jr., M. H.: Comprehensive analyses of transport proteins encoded within the genome of "Aromatoleum aromaticum" strain EbN1, J. Membrane Biol., 229, 53-90, 2009.
    • (2009) J. Membrane Biol. , vol.229 , pp. 53-90
    • Tamang, D.G.1    Rabus, R.2    Barabote, R.D.3    Saier Jr., M.H.4
  • 55
    • 4344685944 scopus 로고    scopus 로고
    • Reassessing PCR primers targeting nirS, nirK and nosZ genes for community surveys of denitrifying bacteria with DGGE
    • DOI 10.1016/j.femsec.2004.04.011, PII S0168649604001473
    • Throbac̈k, I. N., Enwall, K., Jarvis, A, and Hallin, S.: Reassessing PCR primers targeting nirS, nirK and nosZ genes for community surveys of denitrifying bacteria with DGGE, FEMS Microbiol. Ecol., 49, 401-417, 2004. (Pubitemid 39119598)
    • (2004) FEMS Microbiology Ecology , vol.49 , Issue.3 , pp. 401-417
    • Throback, I.N.1    Enwall, K.2    Jarvis, A.3    Hallin, S.4
  • 56
    • 33750998163 scopus 로고    scopus 로고
    • Vertical distribution of nitrite reductase genes (nir S) in continental margin sediments of the Gulf of Mexico
    • DOI 10.1111/j.1574-6941.2006.00173.x
    • Tiquia, S. M., Masson, S. A., and Devol, A.: Vertical distribution of nitrite reductase genes (nirS) in continental margin sediments of the Gulf of Mexico, FEMS Microbiol. Ecol., 58, 464-475, 2006. (Pubitemid 44748155)
    • (2006) FEMS Microbiology Ecology , vol.58 , Issue.3 , pp. 464-475
    • Tiquia, S.M.1    Masson, S.A.2    Devol, A.3
  • 57
    • 19644393109 scopus 로고    scopus 로고
    • Characterization of denitrifying polyphosphate-accumulating organisms in activated sludge based on nitrite reductase gene
    • DOI 10.1263/jbb.99.403
    • Tsuneda, S., Miyauchi, R., Ohno, T., and Hirata, A.: Characterization of denitrifying polyphosphate-accumulating organisms in activated sludge based on nitrite reductase gene, J. Biosci. Bioneng., 99, 403-407, 2005. (Pubitemid 40740592)
    • (2005) Journal of Bioscience and Bioengineering , vol.99 , Issue.4 , pp. 403-407
    • Tsuneda, S.1    Miyauchi, R.2    Ohno, T.3    Hirata, A.4
  • 59
    • 0037229896 scopus 로고    scopus 로고
    • Molecular diversity and characterization of nitrate-and uraniumcontaminated groundwater
    • Yan, T., Fields, M., Wu, L., Zu, Y., Tiedje, J., and Zhou, J.: Molecular diversity and characterization of nitrate-and uraniumcontaminated groundwater, Environ. Microbiol., 5, 13-24, 2003.
    • (2003) Environ. Microbiol. , vol.5 , pp. 13-24
    • Yan, T.1    Fields, M.2    Wu, L.3    Zu, Y.4    Tiedje, J.5    Zhou, J.6
  • 60
    • 0031456471 scopus 로고    scopus 로고
    • Cell biology and molecular basis of denitrification?
    • Zumft, W.: Cell biology and molecular basis of denitrification, Microbiol. Mol. Biol. Rev., 61, 533-616, 1997. (Pubitemid 28006959)
    • (1997) Microbiology and Molecular Biology Reviews , vol.61 , Issue.4 , pp. 533-616
    • Zumft, W.G.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.