Distribution of nitrogenous nutrients and denitrifiers strains in estuarine sediment profiles of the Tanshui River, northern Taiwan

Estuarine, Coastal and Shelf Science

Volumn 69, Issue 3-4, 2006, Pages 543-553

  Fan, L F ^a,b   Shieh, W Y ^a   Wu, W F ^c   Chen, C P ^b,c  

^a NATIONAL TAIWAN UNIVERSITY   (Taiwan)

^b BIODIVERSITY RESEARCH CENTER   (Taiwan)

^c NATIONAL TAIWAN UNIVERSITY   (Taiwan)

Author keywords

Bacillus; denitrifier; nitrogenous nutrients; sediment; Tanshui River

Indexed keywords

ESTUARINE SEDIMENT; NITROGEN COMPOUND; NUTRIENT; PHYLOGENETICS; PHYSIOLOGY;

ASIA; EURASIA; FAR EAST; GUANDU NATURE PARK; TAIWAN; TANSHUI RIVER;

BACILLUS BATAVIENSIS; BACILLUS FIRMUS; BACILLUS JEOTGALI; BACILLUS SPHAERICUS;

EID: 33748451449     PISSN: 02727714     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ecss.2006.05.016     Document Type: Article

References (35)

1. An S.M., and Gardner W.S. Dissimilatory nitrate reduction to ammonium (DNRA) as a nitrogen link, versus denitrification as a sink in a shallow estuary (Laguna Madre/Baffin Bay, Texas). Marine Ecology Progress Series 237 (2002) 41-50
2. Bennasar A., Guasp C., Tesar M., and Lalucat J. Genetic relationships among Pseudomonas stutzeri strains based on molecular typing methods. Journal of Applied Microbiology 85 4 (1998) 643-656
3. Canfield D.E., Raiswell R., Westrich J.T., Reaves C.M., and Berner R.A. The use of chromium reduction in the analysis of reduced inorganic sulfur in sediments and shales. Chemical Geology 54 1-2 (1986) 149-155
4. Canfield D.E., Thamdrup B., and Kristensen E. Aquatic geomicrobiology. Advances in Marine Biology 48 (2005) 1-600
5. Capone D.G., and Kiene R.P. Comparison of microbial dynamics in marine and freshwater sediments: contrasts in anaerobic carbon catabolism. Limnology and Oceanography 33 (1988) 725-749
6. Chiu C.Y., Lee S.C., Chen T.H., and Tian G.L. Denitrification associated N loss in mangrove soil. Nutrient Cycling in Agroecosystems 69 3 (2004) 185-189
7. Cline J.D. Spectrophotometric determination of hydrogen sulfide in natural waters. Limnology and Oceanography 14 3 (1969) 454-458
8. Felsenstein J. PHYLIP-Phylogeny Inference Package Version 3.2. Cladistics 5 (1989) 164-166
9. Heyrman J., Vanparys B., Logan N.A., Balcaen A., Rodiguez-Diaz M., Felske A., and De Vos P. Bacillus novalis sp. nov., Bacillus vireti sp. nov., Bacillus soli sp. nov., Bacillus bataviensis sp. nov. and Bacillus drentensis sp. nov., from the Drentse A grasslands. International Journal of Systematic and Evolutionary Microbiology 54 (2004) 47-57
10. Hsieh H.L. Spatial and temporal patterns of polychaete communities in a subtropical mangrove swamp-influences of sediment and microhabitat. Marine Ecology Progress Series 127 1-3 (1995) 157-167
11. Jiann K.-T., Wen L.S., and Santschi P.H. Trace metal (Cd, Cu, Ni and Pb) partitioning, affinities and removal in the Danshuei River estuary, a macro-tidal, temporally anoxic estuary in Taiwan. Marine Chemistry 96 3-4 (2005) 293-313
12. Jukes T.H., and Cantor C.R. Evolution of protein molecules. In: Munro H.N. (Ed). Mammalian Protein Metabolism (1969), Academic Press, New York 21-132
13. Kim J.K., Park K.J., Cho K.S., Nam S.-W., Park T.-J., and Bajpai R. Aerobic nitrification-denitrification by heterotrophic Bacillus strains. Bioresource Technology 96 (2005) 1897-1906
14. Klobutcher L.A., Ragkousi K., and Setlow P. The Bacillus subtilis spore coat provides "eat resistance" during phagocytic predation by the protozoan Tetrahymena thermophila. Proceedings of the National Academy of Sciences of the United States of America 103 1 (2006) 165-170
15. Liu W.C., Hsu M.H., and Kuo A.Y. Modeling of hydrodynamics and cohesive sediment transport in Tanshui River estuarine system, Taiwan. Marine Pollution Bulletin 44 (2002) 1076-1088
16. Mäkelä K., and Tuominen L. Pore water nutrient profiles and dynamics in soft bottoms of the northern Baltic Sea. Hydrobiologia 492 (2003) 43-53
17. Morse J.W., and Richard D. Chemical dynamics of sedimentary acid volatile sulfide. Environmental Science and Technology April 1 (2004) 131A-136A
18. Nedwell D.B., Jickells T.D., Trimmer M., and Sanders R. Nutrients in estuaries. Advances in Ecological Research 29 (1999) 43-92
19. O'Dell J.W., Pfaff J.D., Gales M.E., and McKee G.D. Method 300.0: The determination of inorganic anions in water by ion chromatography (1984), Environmental Protection Agency, Cincinnati, OH, USA
20. Ogilvie B., Nedwell D.B., Harrison R.M., Robinson A., and Sage A. High nitrate, muddy estuaries as nitrogen sinks: the nitrogen budget of the River Colne estuary (United Kingdom). Marine Ecology Progress Series 150 (1997) 217-228
21. Ouddane B., Boust D., Martin E., Fischer J.C., and Wartel M. The post-depositional reactivity of iron and manganese in the sediments of a macrotidal estuarine system. Estuaries 24 6B (2001) 1015-1028
22. Pai S.C., and Riley J.P. Determination of nitrate in presence of nitrite in natural water by flow injection analysis with a non-quantitative online cadmium reductor. International Journal of Environmental Analytical Chemistry 57 (1994) 263-277
23. Pai S.C., Tsau Y.J., and Yang T.I. PH and buffering capacity problems involved in the determination of ammonia in saline water using the indophenol blue spectrophotometric method. Analytica Chimica Acta 434 (2001) 209-2160
24. 15N dilution technique and isotope pairing. Applied and Environmental Microbiology 59 (1993) 2093-2098
25. Shieh W.Y., Simidu U., and Maruyama Y. Enumeration and characterization of nitrogen-fixing bacteria in an eelgrass (Zostera marina) bed. Microbial Ecology 18 (1989) 249-259
26. Shieh W.Y., Lin Y.T., and Jean W.D. Pseudovibrio denitrificans gen. nov., sp. nov., a marine, facultative anaerobic, fermentative bacterium capable of denitrification. International Journal of Systematic and Evolutionary Microbiology 54 (2004) 2307-2312
27. Sneath P.H.A. Endospore forming gram-positive rods and cocci. In: Sneath P.H.A., Mair N.S., Sharpe M.E., and Holt J.G. (Eds). Bergey's Manual of Systematic Bacteriology vol. 2 (1986), Williams and Wilkins Press, Baltimore, MD 1104-1207
28. 2 through anaerobic ammonium oxidation coupled to nitrate reduction in marine sediments. Applied and Environmental Microbiology 59 3 (2002) 1312-1318
29. Thompson D.B., Ravussin E., Bennett P.H., and Bogardus C. Structure and sequence variation at the human leptin receptor gene in lean and obese Pima Indians. Human Molecular Genetics 6 5 (1997) 675-679
30. Tiedje J.M. Ecology of denitrification and dissimilatory nitrate reduction to ammonium. In: Zehnder A.J.B. (Ed). Biology of Anaerobic Microorganisms (1988), Wiley, New York 179-244
31. Usui T., Koike I., and Ogura N. Tidal effect on dynamics of pore water nitrate in intertidal sediment of a eutrophic estuary. Journal of Oceanography 54 (1998) 205-216
32. Weier K.L., and MacRae I.C. Denitrifying bacteria in the profile of a brigalow clay soil beneath a permanent pasture and a cultivated crop. Soil Biology and Biochemistry 24 9 (1992) 919-923
33. Wu J.T. A generic index of diatom assemblages as bioindicator of pollution in the Keelung River of Taiwan. Hydrobiologia 397 (1999) 79-87
34. Yoon J.-H., Kang S.-S., Lee K.C., Kho Y.H., Choi S.H., Kang K.H., and Park Y.-H. Bacillus jeotgali sp. nov., isolated from jeotgal, Korean traditional fermented seafood. International Journal of Systematic and Evolutionary Microbiology 51 (2001) 1087-1092
35. Zumft W.G. The denitrifying procaryotes. In: Balows A., Trüper H.G., Dworkin M., Harder W., and Schleifer K.H. (Eds). The Prokaryotes vol. 1 (1992), Springer Verlag Press, New York 554-582