Herbaspirillum rhizosphaerae sp. nov., isolated from rhizosphere soil of Allium victorialis var. platyphyllum

International Journal of Systematic and Evolutionary Microbiology

Volumn 57, Issue 10, 2007, Pages 2284-2288

  Jung, Seo Youn ^a   Lee, Mi Hwa ^a   Oh, Tae Kwang ^a   Yoon, Jung Hoon ^a  

^a Korea Research Institute of Bioscience and Biotechnology (KRIBB)   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

CYTOSINE; FATTY ACID; GUANINE; RNA 16S; UBIQUINONE;

ARTICLE; BACTERIAL GROWTH; BACTERIUM ISOLATE; BACTERIUM ISOLATION; CONTROLLED STUDY; DNA CONTENT; FATTY ACID ANALYSIS; GARLIC; GENOMICS; GENUS; GRAM NEGATIVE BACTERIUM; HERBASPIRILLUM; HERBASPIRILLUM RHIZOSPHAERAE; KOREA; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; RHIZOSPHERE; RNA SEQUENCE; SEQUENCE HOMOLOGY; TAXONOMY; TEMPERATURE; TYPE STRAIN;

ALLIUM; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; GENES, RRNA; HERBASPIRILLUM; KOREA; LOCOMOTION; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHYLOGENY; PIGMENTS, BIOLOGICAL; PLANT ROOTS; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID; TEMPERATURE; UBIQUINONE;

ALLIUM VICTORIALIS VAR. PLATYPHYLLUM; BACTERIA (MICROORGANISMS); HERBASPIRILLUM; HERBASPIRILLUM RHIZOSPHAERAE; NEGIBACTERIA;

EID: 35648971046     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.64666-0     Document Type: Article

References (24)

1. Aragno, M. & Schlegel, H. G. (1978). Aquaspirillum autotrophicum, a new species of hydrogen-oxidizing, facultatively autotrophic bacteria. Int J Syst Bacteriol 28, 112-116.
2. Baldani, J. I., Baldani, V. L. D., Seldin, L. & Döbereiner, J. (1986). Characterization of Herbaspirillum seropedicae gen. nov., sp. nov., a root-associated nitrogen-fixing bacterium. Int J Syst Bacteriol 36, 86-93.
3. Baldani, J. I., Pot B., Kirchhof, G., Falsen, E., Baldani, V. L. D., Olivares, F. L., Hoste, B., Kersters, K., Hartmann, A. & other authors (1996). Emended description of Herbaspirillum; inclusion of [Pseudomonasc] rubrisubalbicans, a mild plant pathogen, as Herbaspirillum rubrisubalbicans comb. nov.; and classification of a group of clinical isolates (EF group 1) as Herbaspirillum species 3. Int J Syst Bacteriol 46, 802-810.
4. Cowan, S. T. & Steel, K J. (1965). Manual for the Identification of Medical Bacteria. London: Cambridge University Press.
5. Ding, L. & Yokota, A. (2004). Proposals of Curvibacter gracilis gen. nov., sp. nov. and Herbaspirillum putei sp. nov. for bacterial isolates isolated from well water and reclassification of [Pseudomonasc] huffiensis, [Pseudomonasc] lanceolata, [Aquaspirillum] delicatum and [Aquaspirilluml autotrophicum as Herbaspirillum huttiense comb. nov., Curvibacter lanceolatus, comb. nov., Curvibacter delicatus comb. nov. and Herbaspirillum autotrophicum comb. nov. Int J Syst Evol Microbiol 54, 2223-2230.
6. Döbereiner, J. (1995). Isolation and identification of aerobic nitrogen-fixing bacteria from soil and plants. In Methods in Applied Soil Microbiology and Biochemistry, pp. 134-141. Edited by K. Alef & P. Nannipieri. London: Academic Press.
7. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in micro-dilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial isolates. Int J Syst Bacteriol 39, 224-229.
8. Im, W.-T., Bae, H.-S., Yokota, A. & Lee, S. T. (2004). Herbaspirillum chlorophenolicum sp. nov., a 4-chlorophenol-degrading bacterium. Int J Syst Evol Microbiol 54, 851-855.
9. Kirchhof, G., Eckert B., Stoffels, M., Baldani, J. I., Reis, V. M. & Hartmann, A. (2001). Herbaspirillum frisingense sp. nov., a new nitrogen-fixing bacterial species that occurs in C4-fibre plants. Int J Syst Evol Microbiol 51, 157-168.
10. Komagata, K. & Suzuki, K. (1987). Lipids and cell-wall analysis in bacterial systematics. Methods Microbiol 19, 161-207.
11. Lanyi, B. (1987). Classical and rapid identification methods for medically important bacteria. Methods Microbiol 19, 1-67.
12. Leifson, E. (1962). The bacterial flora of distilled and stored water. III. New species of the genera Corynebacterium, Flavobacterium, Spirillum and Pseudomonas. Int Bull Bacteriol Nomend Taxon 12, 161-170.
13. Leifson, E (1963). Determination of carbohydrate metabolism of marine bacteria. J Bacteriol 85, 1183-1184.
14. Poly, F., Monrozier, L. J. & Bally, R. (2001). Improvement in the RFLP procedure for studying the diversity of nifH genes in communities of nitrogen fixers in soil. Res Microbiol 152, 95-103.
15. Rothballer, M., Schmid, M., Klein, I., Gattinger, A., Grundmann, S. & Hartmann, A. (2006). Herbaspirillum hiltneri sp. nov., isolated from surface-sterilized wheat roots. Int J Syst Evol Microbiol 56, 1341-1348.
16. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
17. Stoltzfus, J. R., So, R., Malarvithi, P. P., Ladha, J. K. & de Bruijn, F. J. (1997). Isolation of endophytic bacteria from rice and assessment of their potential for supplying rice with biologically fixed nitrogen. Plant Soil 194, 25-36.
18. Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125-128.
19. Valverde, A., Velázquez, E, Gutiérrez, C., Cervantes, E., Ventosa, A. & Igual, J.-M. (2003). Herbaspirillum lusitanum sp. nov., a novel nitrogen-fixing bacterium associated with root nodules of Phaseolus vulgaris. Int J Syst Evol Microbiol 53, 1979-1983.
20. Wayne, L G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O, Krichevsky, M. I., Moore, L H., Moore, W. E., C, Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
21. Yoon, J.-H., Kim, H., Kim, S.-B., Kim, H.-J., Kim, W. Y., Lee, S. T., Goodfellow, M. & Park, Y.-H. (1996). Identification of Saccharomonospora isolates by the use of genomic DNA fragments and rRNA gene probes. Int J Syst Bacteriol 46, 502-505.
22. Yoon, J.-H., Lee, S. T. & Park, Y.-H. (1998). Inter- and intraspecific phylogenetic analysis of the genus Nocardioides and related taxa based on 16S rRNA sequences. Int J Syst Bacteriol 48, 187-194.
23. Yoon, J.-H., Kang, K. H. & Park, Y.-H. (2003). Psychrobacter jeotgali sp. nov., isolated from jeotgal, a traditional Korean fermented seafood. Int J Syst Evol Microbiol 53, 449-454.
24. Yurkov, V., Stackebrandt, E., Holmes, A., Fuerst, J. A, Hugenholtz, P, Golecki, J, Gad'on, N, Gorlenko, V. M, Kompantseva, E. I. & Drews, G. (1994). Phylogenetic positions of novel aerobic, bacteriochlorophyll a- containing bacteria and description of Roseococcus thiosulfatophilus gen. nov., sp. nov., Erythromicrobium ramosum gen. nov., sp. nov., and Erythrobacter litoralis sp. nov. Int J Syst Bacteriol 44, 427-434.