Elevated Ground-Level O 3 Changes the Diversity of Anoxygenic Purple Phototrophic Bacteria in Paddy Field

Microbial Ecology

Volumn 62, Issue 4, 2011, Pages 789-799

  Feng, Youzhi ^a   Lin, Xiangui ^a   Yu, Yongchang ^a   Zhu, Jianguo ^a  

^a INSTITUTE OF GEOLOGY AND GEOPHYSICS   (China)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; OZONE;

ARTICLE; BACTERIAL GENE; DNA FINGERPRINTING; DNA SEQUENCE; ECOSYSTEM; GENETIC VARIABILITY; GENETICS; GENOTYPING TECHNIQUE; GROWTH, DEVELOPMENT AND AGING; MICROBIOLOGY; PHYLOGENY; PROTEOBACTERIA; RICE;

DNA FINGERPRINTING; DNA, BACTERIAL; ECOSYSTEM; GENES, BACTERIAL; GENETIC VARIATION; GENOTYPING TECHNIQUES; ORYZA SATIVA; OZONE; PHYLOGENY; PROTEOBACTERIA; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY;

BACTERIA (MICROORGANISMS); PHOTOBACTERIA; PROTEOBACTERIA; TRITICUM AESTIVUM;

EID: 80255137387     PISSN: 00953628     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00248-011-9895-7     Document Type: Article

References (50)

1. Achenbach LA, Carey J, Madigan MT (2001) Photosynthetic and phylogenetic primers for detection of anoxygenic phototrophs in natural environments. Appl Environ Microbiol 67: 2922-2926.
2. Andersen CP (2003) Source-sink balance and carbon allocation below ground in plants exposed to ozone. New Phytol 157: 213-228.
3. Archana A, Sasikala C, Ramana CV, Arunasri K (2004) "Paraffin wax-overlay of pour plate", a method for the isolation and enumeration of purple non-sulfur bacteria. J Microbiol Meth 59: 423-425.
4. Ashmore MR (2005) Assessing the future global impacts of ozone on vegetation. Plant Cell Environ 28: 949-964.
5. Bent SJ, Gucker CL, Oda Y, Forney LJ (2003) Spatial distribution of Rhodopseudomonas palustris ecotypes on a local scale. Appl Environ Microbiol 69: 5192-5197.
6. Biddle JF, Fitz-Gibbon S, Schuster SC, Brenchley JE, House CH (2008) Metagenomic signatures of the Peru Margin subseafloor biosphere show a genetically distinct environment. Proc Natl Acad Sci USA 105: 10583-10588.
7. Biebl H, Pfennig H (1981) Isolation of members of the family Rhodospirillaceae. Springer, Berlin.
8. Bryant DA, Frigaard NU (2006) Prokaryotic photosynthesis and phototrophy illuminated. Trends Microbiol 14: 488-496.
9. Chen Z, Wang XK, Yao FF, Zheng FX, Feng ZZ (2010) Elevated ozone changed soil microbial community in a rice paddy. Soil Sci Soc Am J 74: 829-837.
10. 2 enrichment facilitates cation release from soil. Ecol Lett 13: 284-291.
11. Eiler A (2006) Evidence for the ubiquity of mixotrophic bacteria in the upper ocean: implications and consequences. Appl Environ Microbiol 72: 7431-7437.
12. 2 enrichment (FACE) enhances the biodiversity of purple phototrophic bacteria in flooded paddy soil. Plant Soil 324: 317-328.
13. Feng YZ, Lin XG, Zhu JG, Jia ZJ (2011) A phototrophy-driven microbial food web in a rice soil. J Soil Sediment 11: 301-311.
14. Feng ZZ, Kobayashi K (2009) Assessing the impacts of current and future concentrations of surface ozone on crop yield with meta-analysis. Atmos Environ 43: 1510-1519.
15. Fujita Y, Nakahara H (2006) Variations in the microalgal structure in paddy soil in Osaka, Japan: comparison between surface and subsurface soils. Limnology 7: 83-91.
16. Giraud E, Fleischman D (2004) Nitrogen-fixing symbiosis between photosynthetic bacteria and legumes. Photosynth Res 82: 115-130.
17. 3 impacts on plant development: a meta-analysis of root/shoot allocation and growth. Plant Cell Environ 29: 1193-1209.
18. Harada N, Nishiyama M, Matsumoto S (2001) Inhibition of methanogens increases photo-dependent nitrogenase activities in anoxic paddy soil amended with rice straw. FEMS Microbiol Ecol 35: 231-238.
19. Harada N, Nishiyama M, Otsuka S, Matsumoto S (2005) Effects of inoculation of phototrophic purple bacteria on grain yield of rice and nitrogenase activity of paddy soil in a pot experiment. Soil Sci Plant Nutr 51: 361-367.
20. Harada N, Otsuka S, Nishiyama M, Matsumoto S (2003) Characteristics of phototrophic purple bacteria isolated from a Japanese paddy soil. Soil Sci Plant Nutr 49: 521-526.
21. Jiao NZ, Zhang Y, Zeng YH, Hong N, Liu RL, Chen F, Wang PX (2007) Distinct distribution pattern of abundance and diversity of aerobic anoxygenic phototrophic bacteria in the global ocean. Environ Microbiol 9: 3091-3099.
22. Jones TG, Freeman C, Lloyd A, Mills G (2009) Impacts of elevated atmospheric ozone on peatland below-ground DOC characteristics. Ecol Eng 35: 971-977.
23. Lee KH, Koh RH, Song HG (2008) Enhancement of growth and yield of tomato by Rhodopseudomonas sp. under greenhouse conditions. J Microbiol 46: 641-646.
24. Liesack W, Schnell S, Revsbech NP (2000) Microbiology of flooded rice paddies. FEMS Microbiol Rev 24: 625-645.
25. Lueders T, Kindler R, Miltner A, Friedrich MW, Kaestner M (2006) Identification of bacterial micropredators distinctively active in a soil microbial food web. Appl Environ Microbiol 72: 5342-5348.
26. McArthur JV, Kovacic DA, Smith MH (1988) Genetic diversity in natural-populations of a soil bacterium across a landscape gradient. Proc Natl Acad Sci USA 85: 9621-9624.
27. McCrady JK, Andersen CP (2000) The effect of ozone on below-ground carbon allocation in wheat. Environ Pollut 107: 465-472.
28. Mujahid M, Sasikala C, Ramana CV (2011) Production of indole-3-acetic acid and related indole derivatives from L-tryptophan by Rubrivivax benzoatilyticus JA2. Appl Microbiol Biot 89: 1001-1008.
29. Oda Y, Larimer FW, Chain PSG, Malfatti S, Shin MV, Vergez LM, Hauser L, Land ML, Braatsch S, Beatty JT, Pelletier DA, Schaefer AL, Harwood CS (2008) Multiple genome sequences reveal adaptations of a phototrophic bacterium to sediment microenvironments. Proc Natl Acad Sci USA 105: 18543-18548.
30. Oda Y, Wanders W, Huisman LA, Meijer WG, Gottschal JC, Forney LJ (2002) Genotypic and phenotypic diversity within species of purple nonsulfur bacteria isolated from aquatic sediments. Appl Environ Microbiol 68: 3467-3477.
31. Okubo Y, Futamata H, Hiraishi A (2006) Characterization of phototrophic purple nonsulfur bacteria forming colored microbial mats in a swine wastewater ditch. Appl Environ Microbiol 72: 6225-6233.
32. Overmann J, Schubert K (2002) Phototrophic consortia: model systems for symbiotic interrelations between prokaryotes. Arch Microbiol 177: 201-208.
33. Pritsch K, Esperschuetz J, Haesler F, Raidl S, Winkler B, Schloter M (2009) Structure and activities of ectomycorrhizal and microbial communities in the rhizosphere of Fagus sylvatica under ozone and pathogen stress in a lysimeter study. Plant Soil 323: 97-109.
34. Qadri SM, Hoare DS (1968) Formic hydrogenlyase and the photoassimilation of formate by a strain of Rhodopseudomonas palustris. J Bacteriol 95: 2344-2357.
35. Rademaker JLW, Louws FJ, de Bruijn FJ (1997) Characterization of the diversity of ecologically important microbes by rep-PCR genomic fingerprinting. Kluwer, Dordrecht.
36. Ranchou-Peyruse A, Herbert R, Caumette P, Guyoneaud R (2006) Comparison of cultivation-dependent and molecular methods for studying the diversity of anoxygenic purple phototrophs in sediments of an eutrophic brackish lagoon. Environ Microbiol 8: 1590-1599.
37. Roger PA (1996) Biology and management of the floodwater ecosystem in ricefields. International Rice Research Institute, Los Baños, Philippines.
38. Schrader S, Bender J, Weigel HJ (2009) Ozone exposure of field-grown winter wheat affects soil mesofauna in the rhizosphere. Environ Pollut 157: 3357-3362.
39. Serdyuk OP, Smolygina LD, Kobzar EF, Gogotov IN (1993) Occurrence of plant hormones in cells of the phototrophic purple bacterium Rhodospirillum rubrum 1R. FEMS Microbiol Lett 109: 113-116.
40. Shi GY, Yang LX, Wang YX, Kobayashi K, Zhu JG, Tang HY, Pan ST, Chen T, Liu G, Wang YL (2009) Impact of elevated ozone concentration on yield of four Chinese rice cultivars under fully open-air field conditions. Agr Ecosyst Environ 131: 178-184.
41. Song TY, Martensson L, Eriksson T, Zheng WW, Rasmussen U (2005) Biodiversity and seasonal variation of the cyanobacterial assemblage in a rice paddy field in Fujian, China. FEMS Microbiol Ecol 54: 131-140.
42. Tada C, Miah S, Tsukahara K, Yagishita T, Sawayama S (2005) Simultaneous methanogenesis and phototrophic bacterial growth in relatively dry sewage sludge under light. J Gen Appl Microbiol 51: 27-33.
43. Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4. 0. Mol Biol Evol 24: 1596-1599.
44. Tsavkelova EA, Klimova SY, Cherdyntseva TA, Netrusov AI (2006) Microbial producers of plant growth stimulators and their practical use: a review. Appl Biochem Microbiol 42: 117-126.
45. Turner NC, Waggoner PE, Rich S (1974) Removal of ozone from atmosphere by soil and vegetation. Nature 250: 486-489.
46. Vingarzan R (2004) A review of surface ozone background levels and trends. Atmos Environ 38: 3431-3442.
47. Vollsnes AV, Kruse OMO, Eriksen AB, Oxaal U, Futsaether CM (2010) In vivo root growth dynamics of ozone exposed Trifolium subterraneum. Environ Exp Bot 69: 183-188.
48. Waidner LA, Kirchman DL (2008) Diversity and distribution of ecotypes of the aerobic anoxygenic phototrophy gene pufM in the Delaware estuary. Appl Environ Microbiol 74: 4012-4021.
49. 2 enrichment on dark respiration of rice plants (Oryza sativa L.). Agr Ecosyst Environ 115: 105-112.
50. 2 accelerates flag leaf senescence in wheat due to ear photosynthesis which causes greater ear nitrogen sink capacity and ear carbon sink limitation. Funct Plant Biol 36: 291-299.