-
1
-
-
0035403872
-
Photosynthetic and phylogenetic primers for detection of anoxygenic phototrophs in natural environments
-
Achenbach, L. A., J. Carey, and M. T. Madigan. 2001. Photosynthetic and phylogenetic primers for detection of anoxygenic phototrophs in natural environments. Appl. Environ. Microbiol. 67:2922-2926.
-
(2001)
Appl. Environ. Microbiol
, vol.67
, pp. 2922-2926
-
-
Achenbach, L.A.1
Carey, J.2
Madigan, M.T.3
-
2
-
-
0141816894
-
Aerobic anoxygenic photosynthesis in Roseobacter clade bacteria from diverse marine habitats
-
Allgaier, M., H. Uphoff, A. Felske, and I. Wagner-Döbler. 2003. Aerobic anoxygenic photosynthesis in Roseobacter clade bacteria from diverse marine habitats. Appl. Environ. Microbiol. 69:5051-5059.
-
(2003)
Appl. Environ. Microbiol
, vol.69
, pp. 5051-5059
-
-
Allgaier, M.1
Uphoff, H.2
Felske, A.3
Wagner-Döbler, I.4
-
3
-
-
0025183708
-
Basic Local Alignment Search Tool
-
Altschul, S. F., W. Gish, W. Miller, E. W. Meyers, and D. J. Lipman. 1990. Basic Local Alignment Search Tool. J. Mol. Biol. 215:403-410.
-
(1990)
J. Mol. Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Meyers, E.W.4
Lipman, D.J.5
-
4
-
-
0037033979
-
Unsuspected diversity among marine aerobic anoxygenic phototrophs
-
Béjà, O., M. T. Suzuki, J. F. Heidelberg, W. C. Nelson, C. M. Preston, T. Hamada, J. A. Eisen, C. M. Fraser, and E. F. DeLong. 2002. Unsuspected diversity among marine aerobic anoxygenic phototrophs. Nature 415:630-633.
-
(2002)
Nature
, vol.415
, pp. 630-633
-
-
Béjà, O.1
Suzuki, M.T.2
Heidelberg, J.F.3
Nelson, W.C.4
Preston, C.M.5
Hamada, T.6
Eisen, J.A.7
Fraser, C.M.8
DeLong, E.F.9
-
5
-
-
0036222111
-
Compositional changes in free-living bacterial communities along a salinity gradient in two temperate estuaries
-
Bouvier, T. C., and P. A. del Giorgio. 2002. Compositional changes in free-living bacterial communities along a salinity gradient in two temperate estuaries. Limnol. Oceanogr. 47:453-470.
-
(2002)
Limnol. Oceanogr
, vol.47
, pp. 453-470
-
-
Bouvier, T.C.1
del Giorgio, P.A.2
-
6
-
-
34248585960
-
Polyphyletic photosynthetic reaction centre genes in oligotrophic marine
-
Cho, J. C., M. D. Stapels, R. M. Morris, K. L. Vergin, M. S. Schwalbach, S. A. Givan, D. F. Barofsky, and S. J. Giovannoni. 2007. Polyphyletic photosynthetic reaction centre genes in oligotrophic marine Gammaproteobacteria. Environ. Microbiol. 9:1456-1463.
-
(2007)
Gammaproteobacteria. Environ. Microbiol
, vol.9
, pp. 1456-1463
-
-
Cho, J.C.1
Stapels, M.D.2
Morris, R.M.3
Vergin, K.L.4
Schwalbach, M.S.5
Givan, S.A.6
Barofsky, D.F.7
Giovannoni, S.J.8
-
7
-
-
4143134295
-
Single-cell analysis of bacterial growth, cell size, and community structure in the Delaware estuary
-
Cottrell, M. T., and D. L. Kirchman. 2004. Single-cell analysis of bacterial growth, cell size, and community structure in the Delaware estuary. Aquat. Microb. Ecol. 34:139-149.
-
(2004)
Aquat. Microb. Ecol
, vol.34
, pp. 139-149
-
-
Cottrell, M.T.1
Kirchman, D.L.2
-
8
-
-
33644853451
-
Aerobic anoxygenic phototrophic bacteria in the Mid-Atlantic Bight and the North Pacific Gyre
-
Cottrell, M. T., A. Mannino, and D. L. Kirchman. 2006. Aerobic anoxygenic phototrophic bacteria in the Mid-Atlantic Bight and the North Pacific Gyre. Appl. Environ. Microbiol. 72:557-564.
-
(2006)
Appl. Environ. Microbiol
, vol.72
, pp. 557-564
-
-
Cottrell, M.T.1
Mannino, A.2
Kirchman, D.L.3
-
9
-
-
28644449327
-
Bacterial diversity of metagenomic and PCR libraries from the Delaware River
-
Cottrell, M. T., L. A. Waidner, L. Yu, and D. L. Kirchman. 2005. Bacterial diversity of metagenomic and PCR libraries from the Delaware River. Environ. Microbiol. 7:1883-1895.
-
(2005)
Environ. Microbiol
, vol.7
, pp. 1883-1895
-
-
Cottrell, M.T.1
Waidner, L.A.2
Yu, L.3
Kirchman, D.L.4
-
10
-
-
0032976388
-
Phylogenetic analysis of particle-attached and free-living bacterial communities in the Columbia river, its estuary, and the adjacent coastal ocean
-
Crump, B. C., E. V. Armbrust, and J. A. Baruss. 1999. Phylogenetic analysis of particle-attached and free-living bacterial communities in the Columbia river, its estuary, and the adjacent coastal ocean. Appl. Environ. Microbiol. 65:3192-3204.
-
(1999)
Appl. Environ. Microbiol
, vol.65
, pp. 3192-3204
-
-
Crump, B.C.1
Armbrust, E.V.2
Baruss, J.A.3
-
11
-
-
1642376424
-
Microbial biogeography along an estuarine salinity gradient: Combined influences of bacterial growth and residence time
-
Crump, B. C., C. S. Hopkinson, M. L. Sogin, and J. E. Hobbie. 2004. Microbial biogeography along an estuarine salinity gradient: combined influences of bacterial growth and residence time. Appl. Environ. Microbiol. 70:1494-1505.
-
(2004)
Appl. Environ. Microbiol
, vol.70
, pp. 1494-1505
-
-
Crump, B.C.1
Hopkinson, C.S.2
Sogin, M.L.3
Hobbie, J.E.4
-
12
-
-
0036045397
-
Seasonal dynamics of particle-associated and free-living marine Proteobacteria in a salt marsh tidal creek as determined using fluorescence in situ hybridization
-
Dang, H. Y., and C. R. Lovell. 2002. Seasonal dynamics of particle-associated and free-living marine Proteobacteria in a salt marsh tidal creek as determined using fluorescence in situ hybridization. Environ. Microbiol. 4:287-295.
-
(2002)
Environ. Microbiol
, vol.4
, pp. 287-295
-
-
Dang, H.Y.1
Lovell, C.R.2
-
13
-
-
33845543484
-
Evidence for the ubiquity of mixotrophic bacteria in the upper ocean: Implications and consequences
-
Eiler, A. 2006. Evidence for the ubiquity of mixotrophic bacteria in the upper ocean: implications and consequences. Appl. Environ. Microbiol. 72:7431-7437.
-
(2006)
Appl. Environ. Microbiol
, vol.72
, pp. 7431-7437
-
-
Eiler, A.1
-
14
-
-
0032876852
-
Prokaryotic genome size and SSU rDNA copy number: Estimation of microbial relative abundance from a mixed population
-
Fogel, G. B., C. R. Collins, J. Li, and C. F. Brunk. 1999. Prokaryotic genome size and SSU rDNA copy number: estimation of microbial relative abundance from a mixed population. Microb. Ecol. 38:93-113.
-
(1999)
Microb. Ecol
, vol.38
, pp. 93-113
-
-
Fogel, G.B.1
Collins, C.R.2
Li, J.3
Brunk, C.F.4
-
15
-
-
33847309534
-
Characterization of a marine gammaproteobacterium capable of aerobic anoxygenic photosynthesis
-
Fuchs, B. M., S. Spring, H. Teeling, C. Quast, J. Wulf, M. Schattenhofer, S. Yan, S. Ferriera, J. M. Johnson, F. O. Glöckner, and R. Amann. 2007. Characterization of a marine gammaproteobacterium capable of aerobic anoxygenic photosynthesis. Proc. Natl. Acad. Sci. USA 104:2891-2896.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 2891-2896
-
-
Fuchs, B.M.1
Spring, S.2
Teeling, H.3
Quast, C.4
Wulf, J.5
Schattenhofer, M.6
Yan, S.7
Ferriera, S.8
Johnson, J.M.9
Glöckner, F.O.10
Amann, R.11
-
16
-
-
33748783047
-
Abundant presence of the gamma-like proteobacterial pufM gene in oxic seawater
-
Hu, Y., H. Du, N. Z. Jiao, and Y. Zeng. 2006. Abundant presence of the gamma-like proteobacterial pufM gene in oxic seawater. FEMS Microbiol. Lett. 263:200-206.
-
(2006)
FEMS Microbiol. Lett
, vol.263
, pp. 200-206
-
-
Hu, Y.1
Du, H.2
Jiao, N.Z.3
Zeng, Y.4
-
17
-
-
5044240973
-
Bellerophon: A program to detect chimeric sequences in multiple sequence alignments
-
Huber, T., G. Faulkner, and P. Hugenholtz. 2004. Bellerophon: a program to detect chimeric sequences in multiple sequence alignments. Bioinformatics 20:2317-2319.
-
(2004)
Bioinformatics
, vol.20
, pp. 2317-2319
-
-
Huber, T.1
Faulkner, G.2
Hugenholtz, P.3
-
18
-
-
0035729785
-
True marine and halophilic anoxygenic phototrophic bacteria
-
Imhoff, J. F. 2001. True marine and halophilic anoxygenic phototrophic bacteria. Arch. Microbiol. 176:243-254.
-
(2001)
Arch. Microbiol
, vol.176
, pp. 243-254
-
-
Imhoff, J.F.1
-
19
-
-
0042029315
-
Remarkable diversity of phototrophic purple bacteria in a permanently frozen Antarctic lake
-
Karr, E. A., W. M. Sattley, D. O. Jung, M. T. Madigan, and L. A. Achenbach. 2003. Remarkable diversity of phototrophic purple bacteria in a permanently frozen Antarctic lake. Appl. Environ. Microbiol. 69:4910-4914.
-
(2003)
Appl. Environ. Microbiol
, vol.69
, pp. 4910-4914
-
-
Karr, E.A.1
Sattley, W.M.2
Jung, D.O.3
Madigan, M.T.4
Achenbach, L.A.5
-
20
-
-
16744362282
-
Isolation and characterization of Erythrobacter sp. strains from the upper ocean
-
Koblizek, M., O. Béjà, R. R. Bidigare, S. Christensen, B. Benitez-Nelson, C. Vetriani, M. K. Kolber, P. G. Falkowski, and Z. S. Kolber. 2003. Isolation and characterization of Erythrobacter sp. strains from the upper ocean. Arch. Microbiol. 180:327-338.
-
(2003)
Arch. Microbiol
, vol.180
, pp. 327-338
-
-
Koblizek, M.1
Béjà, O.2
Bidigare, R.R.3
Christensen, S.4
Benitez-Nelson, B.5
Vetriani, C.6
Kolber, M.K.7
Falkowski, P.G.8
Kolber, Z.S.9
-
21
-
-
0035967937
-
Contribution of aerobic photoheterotrophic bacteria to the carbon cycle in the ocean
-
Kolber, Z. S., F. G. Plumley, A. S. Lang, J. T. Beatty, R. E. Blankenship, C. L. VanDover, C. Vetriani, M. Koblížek, C. Rathgeber, and P. G. Falkowski. 2001. Contribution of aerobic photoheterotrophic bacteria to the carbon cycle in the ocean. Science 292:2492-2495.
-
(2001)
Science
, vol.292
, pp. 2492-2495
-
-
Kolber, Z.S.1
Plumley, F.G.2
Lang, A.S.3
Beatty, J.T.4
Blankenship, R.E.5
VanDover, C.L.6
Vetriani, C.7
Koblížek, M.8
Rathgeber, C.9
Falkowski, P.G.10
-
22
-
-
3242810318
-
MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment
-
Kumar, S., K. Tamura, and M. Nei. 2004. MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief. Bioinform. 5:150-163.
-
(2004)
Brief. Bioinform
, vol.5
, pp. 150-163
-
-
Kumar, S.1
Tamura, K.2
Nei, M.3
-
23
-
-
34447502536
-
High abundances of aerobic anoxygenic photosynthetic bacteria in the South Pacific Ocean
-
Lami, R., M. T. Cottrell, J. Ras, O. Ulloa, I. Obernosterer, H. Claustre, D. L. Kirchman, and P. Lebaron. 2007. High abundances of aerobic anoxygenic photosynthetic bacteria in the South Pacific Ocean. Appl. Environ. Microbiol. 73:4198-4205.
-
(2007)
Appl. Environ. Microbiol
, vol.73
, pp. 4198-4205
-
-
Lami, R.1
Cottrell, M.T.2
Ras, J.3
Ulloa, O.4
Obernosterer, I.5
Claustre, H.6
Kirchman, D.L.7
Lebaron, P.8
-
24
-
-
0030879863
-
Horizontal transfer of genes coding for the photosynthetic reaction centers of purple bacteria
-
Nagashima, K. V. P., A. Hiraishi, K. Shimada, and K. Matsuura. 1997. Horizontal transfer of genes coding for the photosynthetic reaction centers of purple bacteria. J. Mol. Evol. 45:131-136.
-
(1997)
J. Mol. Evol
, vol.45
, pp. 131-136
-
-
Nagashima, K.V.P.1
Hiraishi, A.2
Shimada, K.3
Matsuura, K.4
-
25
-
-
12244267987
-
Roseobacter- like bacteria in Red and Mediterranean Sea aerobic anoxygenic photosynthetic populations
-
Oz, A., G. Sabehi, M. Koblížek, R. Massana, and O. Béjà. 2005. Roseobacter- like bacteria in Red and Mediterranean Sea aerobic anoxygenic photosynthetic populations. Appl. Environ. Microbiol. 71:344-353.
-
(2005)
Appl. Environ. Microbiol
, vol.71
, pp. 344-353
-
-
Oz, A.1
Sabehi, G.2
Koblížek, M.3
Massana, R.4
Béjà, O.5
-
26
-
-
10344242462
-
Microbial respiration and production in the Delaware Estuary
-
Preen, K., and D. L. Kirchman. 2004. Microbial respiration and production in the Delaware Estuary. Aquat. Microb. Ecol. 37:109-119.
-
(2004)
Aquat. Microb. Ecol
, vol.37
, pp. 109-119
-
-
Preen, K.1
Kirchman, D.L.2
-
27
-
-
15444362001
-
Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness
-
Schloss, P. D., and J. Handelsman. 2005. Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl. Environ. Microbiol. 71:1501-1506.
-
(2005)
Appl. Environ. Microbiol
, vol.71
, pp. 1501-1506
-
-
Schloss, P.D.1
Handelsman, J.2
-
28
-
-
15944387774
-
Wide-ranging abundances of aerobic anoxygenic phototrophic bacteria in the world ocean revealed by epifluorescence microscopy and quantitative PCR
-
Schwalbach, M. S., and J. A. Fuhrman. 2005. Wide-ranging abundances of aerobic anoxygenic phototrophic bacteria in the world ocean revealed by epifluorescence microscopy and quantitative PCR. Limnol. Oceanogr. 50:620-628.
-
(2005)
Limnol. Oceanogr
, vol.50
, pp. 620-628
-
-
Schwalbach, M.S.1
Fuhrman, J.A.2
-
29
-
-
84986786303
-
The chemistry of the Delaware Estuary: General considerations
-
Sharp, J. H., C. H. Culberson, and T. M. Church. 1982. The chemistry of the Delaware Estuary: general considerations. Limnol. Oceanogr. 27:1015-1028.
-
(1982)
Limnol. Oceanogr
, vol.27
, pp. 1015-1028
-
-
Sharp, J.H.1
Culberson, C.H.2
Church, T.M.3
-
30
-
-
0026616123
-
Effect of protistan grazing on the frequency of dividing cells in bacterioplankton assemblages
-
Sherr, B. F., E. B. Sherry, and J. McDaniel. 1992. Effect of protistan grazing on the frequency of dividing cells in bacterioplankton assemblages. Appl. Environ. Microbiol. 58:2381-2385.
-
(1992)
Appl. Environ. Microbiol
, vol.58
, pp. 2381-2385
-
-
Sherr, B.F.1
Sherry, E.B.2
McDaniel, J.3
-
31
-
-
32944478585
-
Distribution of planktonic aerobic anoxygenic photoheterotrophic bacteria in the northwest
-
Sieracki, M. E., I. C. Gilg, E. C. Thier, N. J. Poulton, and R. Goericke. 2006. Distribution of planktonic aerobic anoxygenic photoheterotrophic bacteria in the northwest Atlantic. Limnol. Oceanogr. 51:38-46.
-
(2006)
Atlantic. Limnol. Oceanogr
, vol.51
, pp. 38-46
-
-
Sieracki, M.E.1
Gilg, I.C.2
Thier, E.C.3
Poulton, N.J.4
Goericke, R.5
-
32
-
-
18444363645
-
Influence of top-down and bottom-up manipulations on the R-BT065 subcluster of Betaproteobacteria, an abundant group in bacterioplankton of a freshwater reservoir
-
Simek, K., K. Horna'k, J. Jezbera, M. Mašín, J. Nedoma, J. M. Gasol, and M. Schauer. 2005. Influence of top-down and bottom-up manipulations on the R-BT065 subcluster of Betaproteobacteria, an abundant group in bacterioplankton of a freshwater reservoir. Appl. Environ. Microbiol. 71:2381-2390.
-
(2005)
Appl. Environ. Microbiol
, vol.71
, pp. 2381-2390
-
-
Simek, K.1
Horna'k, K.2
Jezbera, J.3
Mašín, M.4
Nedoma, J.5
Gasol, J.M.6
Schauer, M.7
-
33
-
-
0036203070
-
Photosynthetic apparatus in Roseateles depolymerans 61A is transcriptionally induced by carbon limitation
-
Suyama, T., T. Shigematsu, T. Suzuki, Y. Tokiwa, T. Kanagawa, K. V. P. Nagashima, and S. Hanada. 2002. Photosynthetic apparatus in Roseateles depolymerans 61A is transcriptionally induced by carbon limitation. Appl. Environ. Microbiol. 68:1665-1673.
-
(2002)
Appl. Environ. Microbiol
, vol.68
, pp. 1665-1673
-
-
Suyama, T.1
Shigematsu, T.2
Suzuki, T.3
Tokiwa, Y.4
Kanagawa, T.5
Nagashima, K.V.P.6
Hanada, S.7
-
34
-
-
0032924340
-
-
Suyama, T., T. Shigematsu, S. Takaichi, Y. Nodasaka, S. Fujikawa, H. Hosoya, Y. Tokiwa, T. Kanagawa, and S. Hanada. 1999. Roseateles depolymerans gen. nov., sp. nov., a new bacteriochlorophyll a-containing obligate aerobe belonging to the beta-subclass of the Proteobacteria. Int. J. Syst. Bacteriol. 49:449-457.
-
Suyama, T., T. Shigematsu, S. Takaichi, Y. Nodasaka, S. Fujikawa, H. Hosoya, Y. Tokiwa, T. Kanagawa, and S. Hanada. 1999. Roseateles depolymerans gen. nov., sp. nov., a new bacteriochlorophyll a-containing obligate aerobe belonging to the beta-subclass of the Proteobacteria. Int. J. Syst. Bacteriol. 49:449-457.
-
-
-
-
35
-
-
0031035973
-
Bacterial diversity among small-subunit rRNA gene clones and cellular isolates from the same seawater sample
-
Suzuki, M. T., M. S. Rappe, Z. W. Haimberger, H. Winfleld, N. Adair, J. Strobel, and S. J. Giovannoni. 1997. Bacterial diversity among small-subunit rRNA gene clones and cellular isolates from the same seawater sample. Appl. Environ. Microbiol. 63:983-989.
-
(1997)
Appl. Environ. Microbiol
, vol.63
, pp. 983-989
-
-
Suzuki, M.T.1
Rappe, M.S.2
Haimberger, Z.W.3
Winfleld, H.4
Adair, N.5
Strobel, J.6
Giovannoni, S.J.7
-
36
-
-
0033760479
-
Quantitative analysis of small-subunit rRNA genes in mixed microbial populations via 5′-nuclease assays
-
Suzuki, M. T., L. T. Taylor, and E. F. DeLong. 2000. Quantitative analysis of small-subunit rRNA genes in mixed microbial populations via 5′-nuclease assays. Appl. Environ. Microbiol. 66:4605-4614.
-
(2000)
Appl. Environ. Microbiol
, vol.66
, pp. 4605-4614
-
-
Suzuki, M.T.1
Taylor, L.T.2
DeLong, E.F.3
-
37
-
-
28644435670
-
Aerobic anoxygenic photosynthesis genes and operons in uncultured bacteria in the Delaware River
-
Waidner, L. A., and D. L. Kirchman. 2005. Aerobic anoxygenic photosynthesis genes and operons in uncultured bacteria in the Delaware River. Environ. Microbiol. 7:1896-1908.
-
(2005)
Environ. Microbiol
, vol.7
, pp. 1896-1908
-
-
Waidner, L.A.1
Kirchman, D.L.2
-
38
-
-
34250886336
-
Aerobic anoxygenic phototrophic bacteria attached to particles in turbid waters of the Delaware and Chesapeake estuaries
-
Waidner, L. A., and D. L. Kirchman. 2007. Aerobic anoxygenic phototrophic bacteria attached to particles in turbid waters of the Delaware and Chesapeake estuaries. Appl. Environ. Microbiol. 73:3936-3944.
-
(2007)
Appl. Environ. Microbiol
, vol.73
, pp. 3936-3944
-
-
Waidner, L.A.1
Kirchman, D.L.2
-
39
-
-
32944476930
-
Phytoplankton response to nutrient enrichment in an urbanized estuary: Apparent inhibition of primary production by overeutrophication
-
Yoshiyama, K., and J. H. Sharp. 2006. Phytoplankton response to nutrient enrichment in an urbanized estuary: apparent inhibition of primary production by overeutrophication. Limnol. Oceanogr. 51:424-434.
-
(2006)
Limnol. Oceanogr
, vol.51
, pp. 424-434
-
-
Yoshiyama, K.1
Sharp, J.H.2
-
40
-
-
29144450328
-
Novel primers reveal wider diversity among marine aerobic anoxygenic phototrophs
-
Yutin, N., M. T. Suzuki, and O. Béjà. 2005. Novel primers reveal wider diversity among marine aerobic anoxygenic phototrophs. Appl. Environ. Microbiol. 71:8958-8962.
-
(2005)
Appl. Environ. Microbiol
, vol.71
, pp. 8958-8962
-
-
Yutin, N.1
Suzuki, M.T.2
Béjà, O.3
-
41
-
-
34248573531
-
Assessing diversity and biogeography of aerobic anoxygenic phototrophic bacteria in surface waters of the Atlantic and Pacific Oceans using the Global Ocean Sampling expedition metagenomes
-
Yutin, N., M. T. Suzuki, H. Teeling, M. Weber, J. C. Venter, D. B. Rusch, and O. Béjà. 2007. Assessing diversity and biogeography of aerobic anoxygenic phototrophic bacteria in surface waters of the Atlantic and Pacific Oceans using the Global Ocean Sampling expedition metagenomes. Environ. Microbiol. 9:1464-1475.
-
(2007)
Environ. Microbiol
, vol.9
, pp. 1464-1475
-
-
Yutin, N.1
Suzuki, M.T.2
Teeling, H.3
Weber, M.4
Venter, J.C.5
Rusch, D.B.6
Béjà, O.7
|