Genetic Variability of Thermal Nymphaea (Nymphaeaceae) Populations Based on ISSR Markers: Implications on Relationships, Hybridization, and Conservation

Plant Molecular Biology Reporter

Volumn 29, Issue 4, 2011, Pages 906-918

  Poczai, Péter ^a   Mátyás, Kinga Klára ^b   Szabó, István ^b   Varga, I ^b   Hyvönen, Jaakko ^a   Cernák, István ^b   Gorji, Ahmad Mosapour ^b   Decsi, K ^b   Taller, János ^b  

^a UNIVERSITY OF HELSINKI   (Finland)

^b UNIVERSITY OF PANNONIA   (Hungary)

Author keywords

Genetic diversity; Hybridization; Inter simple sequence repeats (ISSR); Nymphaea; Reticulate networks

Indexed keywords

NYMPHAEA; NYMPHAEA ALBA; NYMPHAEA CAERULEA; NYMPHAEA LOTUS; NYMPHAEACEAE;

EID: 80255129332     PISSN: 07359640     EISSN: 15729818     Source Type: Journal    
DOI: 10.1007/s11105-011-0302-9     Document Type: Article

References (96)

1. Allendorf FW, Luikart G (2007) Conservation and the genetics of populations. Blackwell, Malden.
2. Anderson EC, Thompson EA (2002) A model-based method for identifying species hybrids using multilocus genetic data. Genetics 160: 1217-1229.
3. Arif M, Zaidi NW, Singh YP, Haq QMR, Singh US (2009) A comparative analysis of ISSR and RAPD markers for study genetic diversity in shisham (Dalbergia sissoo). Plant Mol Biol Rep 27: 488-495.
4. Beckstrom-Sternberg SM, Rieseberg LH, Doan K (1991) Gene lineage analysis in populations of Helianthus niveus and H. petiolaris (Asteraceae). Plant Syst Evol 175: 125-138.
5. Bell NE, Hyvönen J (2010) Phylogeny of the moss class Polytrichopsida (Bryophyta): generic-level structure and incongruent gene trees. Mol Phylogenet Evol 55: 381-398.
6. Bél M (1735) Notitia Hungariae Novae historico geographica. Wien.
7. Bernhardt P, Sage T, Weston P, Azuma H, Lam M, Thien LB, Bruhl J (2003) The pollination of Trimenia moorei (Trimeniaceae): Floral volatiles, insect/wind pollen vectors and stigmatic self-incompatibility in basal angiosperm. Ann Bot 92: 445-458.
8. Beug H-J (1961) Leitfaden der Pollenbestimmung für Mitteleuropa und angrenzende Gebiete. Gustav Fischer, Stuttgart, p 21.
9. Bolaric S, Barth S, Melchinger AE, Posselt UK (2005) Genetic diversity in European perennial rygrass cultivars investigated with RAPD markers. Plant Breed 124: 161-166.
10. Bolkhovskikh Z, Grif V, Matvejeva T, Zakhazyeva O (1969) [Khromosomnye chisla tsvetkovyh rastenij]. Leningrad: Academy of Sciences of the U. S. S. R. [In Russian.].
11. Bornet B, Branchard M (2001) Nonanchored inter simple sequence repeat (ISSR) markers: reproducible and specific tools for genome fingerprinting. Plant Mol Biol Rep 19: 209-215.
12. Borsch T, Hilu KW, Quandt D, Wilde V, Neinhuis C, Barthlott W (2003) Non-coding plastid trnT-trnF sequences reveal a well resolved phylogeny of basal angiosperms. J Evol Biol 16: 558-576.
13. Borsch T, Hilu KW, Wiersema JH, Löhne C, Bartholott W, Wilde V (2007) Phylogeny of Nymphaea (Nymphaeceae): evidence from substitutions and microstructural changes in the chloroplast trnT-trnF region. Int J Plant Sci 168(5): 639-671.
14. Borsch T, Löhne C, Wiersema J (2008) Phylogeny and evolutionary patterns in Nymphaeales: integrating genes genomes and morphology. Taxon 57(4): 1052-1081.
15. Botstein D, White RL, Skolnick M, Davis RW (1980) Construction of a genetic linkage map in man using restriction fragment length polymorphisms. Am J Hum Genet 32: 314-331.
16. Bryant D, Moulton V (2004) NeighborNet: an agglomerative method for the construction of phylogenetic networks. Mol Biol Evol 21(2): 255-265.
17. Caspary R (1865) Nymphaeaceae. Ann Mus Bot Lugduno-Batavum 2: 241-253.
18. Caspary R (1879) Hvilken utbredning hafva Nymphaeaceerne i Skandinavien? Bot Notiser 3: 65-93.
19. Caspary R (1888) Nymphaeaceae. In: Engler A, Prantl K (eds) Die natürlichen Pflanzenfamilien, vol 3. Engelmann, Leipzig, pp 1-10.
20. Chen L-H, Yu Z, Jin H-P (2010) Comparison of ribosomal DNA Its regions among Hippophae rhammoides ssp. sinensis from different geographic areas in China. Plant Mol Biol Rep 28: 635-645.
21. Conard HS (1905) The waterlilies. A monograph of the genus Nymphaea, The Carnegie Institution of Washington, publication no. 4, pp 172-179.
22. De Riek J, Calsyn E, Everaert I, van Bockstaele E, De Loose M (2001) AFLP based alternatives for the assessment of distinctness, uniformity and stability of sugar beet varieties. Theor Appl Genet 103: 1254-1265.
23. Dubyna DV (1982) Nymphaeaceae of the Ukraine. Naukova Dumka, Kiev [In Russian].
24. Durett R, Buttel L, Harrison R (2000) Spatial models for hybrid zones. Heredity 84: 9-19.
25. Endress PK (2001) The flowers in extant basal angiosperms and inferences on ancestral flowers. Int J Plant Sci 162(5): 1111-1140.
26. Esser C, Ahmadinejad N, Wiegand C, Rotte C, Sebastiani F, Gelius-Dietrich G, Henze K, Kretschmann E, Richly E, Leister D, Bryant D, Steel MA, Lockhart P, Penny D, Martin W (2004) A genome phylogeny for mitochondria among α-proteobactera and predominantly eubacterial ancestry of yeast nuclear genes. Mol Biol Evol 21(9): 1643-1660.
27. Fang DQ, Roose ML (1997) Identification of closely related citrus cultivars with inter-simple sequence repeat markers. Theor Appl Genet 95: 211-219.
28. Fisher PJ, Gardner RC, Richardson TE (1996) Single locus microsatellites isolated using 50 anchored PCR. Nucl Acids Res 24(21): 4369-4371.
29. Fitch W (1997) Networks and viral evolution. J Mol Evol 44: 65-75.
30. Glück H (1924) Biologische und Morphologische Untersuchungen über Wasser- und Sumpfgewächse, IV. Untergetauchte und Schwimmblattflora, Gustav Fischer Verlag, Jena, Teil, pp 328-459.
31. González-Rodríguez A, Arias DM, Valencia S, Oyama K (2004) Morphological and RAPD analysis of hybridization between Quercus affinis and Q. laurina (Fagaceae), two Mexican red oaks. Am J Bot 91(3): 401-409.
32. Gomes S, Martins-Lopes P, Lopes J, Guedes-Pinto H (2009) Assessing genetic diversity in Olea europea L. using ISSR and SSR markers. Plant Mol Biol Rep 27: 365-373.
33. Gupta PP (1978) Cytology of Nymphaea. Cytologia 43: 477-484.
34. Gupta PP (1980) Evolutionary trends of the genus Nymphaea. Cytologia 45: 307-314.
35. Hegi E (1965) Familie Nymphaeaceae. Illustrierte Flora von Mitteleuropa, Band III, Carl Hansen: Wien. pp 1-29.
36. Henry RJ (1997) Practical applications of plant molecular biology. Chapman and Hall, London, pp 59-98.
37. Heslop-Harrison Y (1955) Nymphaea L. em. Sm. (nom. conserv). J Ecol 43: 719-734.
38. Hirthe G, Porembski S (2003) Pollination of Nymphaea lotus (Nymphaeaceae) by Rhinoceros beetles and bees in the Northeastern Ivory Coast. Plant Biol 5(6): 670-676.
39. Huson DH, Steel M (2004) Phylogenetic trees based on gene content. Bioinformatics 20(13): 2044-2049.
40. Huson DH, Kloepper T, Lockhart PJ, Steel MA (2005) Reconstruction of reticulate networks from gene trees. In: Proceedings of the Ninth International Conference on Research in Computational Molecular Biology (RECOMB). Springer, New York, pp 233-249.
41. Huson DH, Kloepper TH (2005) Computing recombination networks from binary sequences. Bioinformatics 21(2): 159-165.
42. Huson DH, Bryant D (2006) Application of phylogenetic networks in evolutionary studies. Mol Biol Evol 23: 254-267.
43. Jones MR, Clarke GCS (1981) Nymphaeaceae. In: Punt W, Clarke GCS (eds) The Northwest European pollen flora III. Elsevier Sci, Amesterdam, pp 56-67.
44. Kantety RV, Zeng X, Bennetzen JL, Zehr BE (1995) Assessment of genetic diversity in dent and popcorn (Zea mays L.) inbred lines using inter-simple sequence repeat (ISSR) amplification. Mol Breed 1: 365-373.
45. Kitaibel P (1799) Descriptiones et Icones Plantarum Rariorum Hungariae. Wien.
46. Kotchoni SO, Gachomo EW (2009) A rapid and hazardous reagent free protocol for genomic DNA extraction suitable for genetic studies in plants. Mol Biol Rep 36: 1633-1636.
47. Langlet O, Soderberg E (1928) Uber die Chromosomenzahlen eininger Nymphaeaceen. Acta Horti Bergiani 9(4): 85-104.
48. Lavania UC (2002) Chromosome diversity in population: defining conservation units and their micro-identification through genomic in situ painting. Curr Sci 83(2): 124-127.
49. Les DH, Schneider EL, Padgett DJ, Soltis PS, Soltis DE, Zanis M (1999) Phylogeny, classification and floral evolution of water lilies (Nymphaeaceae; Nymphaeales): a synthesis of non-molecular, rbcL, matK, and 18S rDNA data. Syst Bot 24: 28-46.
50. Lewontin RC (1972) The apportionment of human diversity. Evol Biol 6: 381-398.
51. Linnaeus C (1753) Species plantarum, 2 vols. Stockholm.
52. Liu BH (1998) Statistical genomics: linkage, mapping and QTL analysis. CRC Press, Boca Raton, FL, pp 158-159.
53. Lovassy S (1908) A keszthelyi Hévíz tropikus tündérrózsái. A Balaton flórája. Hornyánszky Viktor Publ, Budapest, Hungary.
54. Löhne C, Borsch T (2005) Phylogenetic utility and molecular evolution of the petD group II intron in basal angiosperms. Mol Biol Evol 22: 317-332.
55. Löhne C, Borsch T, Jacobs SWL, Hellquist CB, Wiersema JH (2008a) Nuclear and plastid DNA sequences reveal complex reticulate patterns in Australian water lilies (Nymphaea subgenus Anecphya, Nymphaeaceae). Aust Syst Bot 21: 229-250.
56. Löhne C, Yoo M-J, Borsch T, Wiersema J, Wilde V, Bell CD, Barthlott W, Soltis DE, Soltis PS (2008b) Biogeography of Nymphaeales: extant patterns and historical events. Taxon 57: 1123-1146.
57. Lüdtke R, Agostini G, Miotto STS, Souza-Chies TT (2010) Characterizing Polygala L. (Polygalaceae) species in Southern Brazil using ISSR. Plant Mol Biol Rep 28: 317-323.
58. Masters CO (1974) Encyclopedia of the water lily. T. F. H. Publications, Inc., USA.
59. McDermott JM, McDonald BA (1993) Gene flow in plant pathosystems. Annu Rev Phytopathol 31: 353-373.
60. Milligan BG, Leebens-Mack J, Strand AE (1994) Conservation genetics: beyond the maintenance of marker diversity. Mol Ecol Notes 3(4): 423-435.
61. Muntendam JB, Povel GDE, van der Velde G (1996) Morphometric patterns in the Nymphaea alba-candida complex. Acta Bot Neerl 45(3): 279-302.
62. Neel MC, Ellstrand NC (2003) Conservation of genetic diversity in the endangered plant Eriogonum ovalifolium var. vinum (Polygonaceae). Conserv Genet 4: 337-352.
63. Nei M (1973) Analysis of gene diversity in subdivided populations. Proc Natl Acad Sci USA 70: 3321-3324.
64. Nei M, Li WH (1979) Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc Natl Acad Sci USA 76: 5269-5273.
65. Orban I, Bouharmont J (1995) Reproductive biology of Nymphaea capensis Thunb. var. zanzibarensis (Casp.) Verdc. (Nymphaeaceae). Bot J Linn Soc 119: 35-43.
66. Peakall E, Smouse PE (2006) Genalex 6: genetic analysis in Excel. Population genetic software for teaching and research. Mol Ecol Notes 6: 255-295.
67. Poczai P, Hyvönen J (2011) On the origin of Solanum nigrum: can networks help? Mol Biol Rep 38: 1171-1185.
68. Provan J, Powell W, Waugh R (1996) Microsatellite analysis of relationships within cultivated potato (Solanum tuberosum). Theor Appl Genet 92: 1078-1084.
69. Qiu Y-L, Dombrovska O, Lee J, Li L, Whitlock BA, Bernasconi-Quadroni F, Rest JS, Davis CC, Borsch T, Hilu W, Renner SS, Soltis DE, Soltis PS, Zanis MJ, Cannone JJ, Gutell RR, Powell M, Savolainen V, Chatrou LW, Chase MW (2005a) Phylogenetic analyses of basal angiosperms based on nine plastid, mitochondrial, and nuclear genes. Int J Plant Sci 166: 815-842.
70. Qiu YX, Zhou XW, Fu CX, Gilbert CYS (2005b) A preliminary study of genetic variation in the endangered, Chinese endemic species Dysosma versipellis (Berberidaceae). Bot Bull Acad Sin 46: 65-73.
71. Radics F (1967) A revision of the Nymphaea material in Hungarian Naural History Museum. Pars Bot 59: 135-145.
72. Rieseberg LH, Ellstrand NC (1993) Introgression and its consequences in plants. In: Harrison RG (ed) Hybrid zones and the evolutionary process. Oxford University Press, New York, USA, pp 70-109.
73. Slocum PD (2005) Waterlilies and lotuses: species, cultivars and new hybrids. Timber Press, USA.
74. Soltis PS, Soltis DE (2000) The role of genetic and genomic attributes in the success of polyploids. PNAS USA 97: 7051-7057.
75. Szabó I (1994) A Hévízi-tó makrovegetációja. In: Laczkó, A. (Ed.) A Hévízi 'Csoda tó', Tanulmányok, Hévíz Lönyvtár 1: 48-59.
76. Szabó I (1997) A Georgikon szerepe a flórakutatás történetében (A Keszthelyi-hegység flórakutatásának története I.). Bot Közl 84: 131-140.
77. Szabó I (2003) A hévízi-tó és lápi mellékvizeinek magasabbrendu{double acute} növényzete. Bot Közl 89: 105-115.
78. Szenczy I, Hutter M, Wierzbicki P (1842) Elenchus plantarum in territorio Keszthelyensi a cl. cl. Sz. H. et W. Observatarum, exemissis cryptogamis. Fol. Lat. 3029. Manuscript, Hungarian National Museum.
79. Takaki Y, Kawahara T, Kitamura H, Endo K, Kudo T (2009) Genetic diversity and genetic structure of Northern Goshawk (Accipiter gentiles) populations in eastern Japan and Central Asia. Conserv Genet 10: 269-279.
80. Tanya P, Taeprayoon P, Hadkam Y, Srinives P (2011) Genetic diversity among Jatropha and Jatropha-related species based on ISSR markers. Plant Mol Biol Rep 29: 252-264.
81. Vargas-Ponce O, Pérez-Álvarez LF, Zamora-Tavares P, Rodríguez A (2011) Assessing genetic diversity in Mexican husk tomato species. Plant Mol Biol Rep. doi: 10. 1007/s11105-010-0258-1.
82. Verdcourt B (1989) Flora of tropical East Africa-Nymphaeaceae, Royal Botanic Gardens, Kew pp. 1-2.
83. Wei Z, Zhang K, Yang C, Liu G, Liu G, Lian L, Zhang H (2010) Genetic linkage maps of Betula platyphylla Suk based on ISSR and AFLP markers. Plant Mol Biol Rep 28: 169-175.
84. Volkova PA, Shipunov AB (2007) Morphological variation of Nymphaea (Nymphaeaceae) in European Russia. Nord J Bot 25: 329-338.
85. Volkova PA, Trávníček P, Brochmann C (2010) Evolutionary dynamics across discontinuous freshwater systems: rapid expansions and repeated allopolyploid origins in the Palearctic white water lilies (Nymphaea). Taxon 59: 483-494.
86. Werner K, Hellwig F (2006) Hybridization between Nymphaea alba and Nymphaea candida investigated by AFLP fingerprinting and morphological data. In: Abstracts of the 17th International Symposium Biodiversity and Evolutionary Biology, Bonn, pp 227.
87. Wiersema JH (1988) Reproductive biology of Nymphaea (Nymphaeaceae). Ann Mo Bot Gard 75: 795-804.
88. Wolfe AD, Xiang Q-Y, Kephart SR (1998) Diploid hybrid speciation in Penstemon (Scrophulariaceae). Proc Natl Acad Sci USA 95: 5112-5115.
89. Woods K (2003) Nymphaea odorata (Waterlily, Nymphaeaceae): analyses of molecular and morphological studies, M. Sc. thesis, Virginia Polytechnic Institute and State University.
90. Woods K, Hilu K, Wiersema JH, Borsch T (2005) Pattern of variation and systematics of Nymphaea odorata: I. Evidence from morphology and inter-simple sequence repeats (ISSRs). Sys Bot 30(3): 471-480.
91. Ye C, Yu Z, Kong F, Wu S, Wang B (2005) R-ISSR as a new tool for genomic fingerprinting, mapping, and gene tagging. Plant Mol Biol Rep 23: 167-177.
92. Yeh FC, Yang RC, Boyle T (1999) POPGENE. Microsoft Windows-based freeware for population genetic analysis. Release 1. 32. University of Alberta, Edmonton.
93. Young WP, Ostberg CO, Keim P, Thorgaard GH (2001) Genetic characterization of hybridization and introgression between andromous rainbow trout (Oncorhynchus mykiss) and coastal cutthroat tout (O. clarki clarki). Mol Ecol 10: 921-930.
94. Zhang ZY, Chen YY, Li DZ (2005) Detection of low genetic variation in a critically endangered Chinese pine, Pinus squamata using RAPD and ISSR markers. Biochem Genet 43: 239-249.
95. Zietkiewics E, Rafalski A, Labuda D (1994) Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification. Genomics 20: 176-183.
96. Zong M, Liu H-L, Qui Y-X, Yang S-Z, Zhao M-S, Fu C-X (2008) Genetic diversity and geographic differentiation in the threatened species Dysosma pleiantha in China as revealed by ISSR analysis. Biochem Genet 46: 180-196.