-
1
-
-
0028988485
-
Position-independent transgene expression mediated by boundary elements from the apolipoprotein B chromatin domain
-
Kalos, M. and Fournier, R.E. (1995) Position-independent transgene expression mediated by boundary elements from the apolipoprotein B chromatin domain. Mol. Cell. Biol., 15, 198-207. (Pubitemid 24379916)
-
(1995)
Molecular and Cellular Biology
, vol.15
, Issue.1
, pp. 198-207
-
-
Kalos, M.1
Fournier, R.E.K.2
-
2
-
-
0037076316
-
Position-effect protection and enhancer blocking by the chicken β-globin insulator are separable activities
-
DOI 10.1073/pnas.102179399
-
Recillas-Targa, F., Pikaart, M.J., Burgess-Beusse, B., Bell, A.C., Litt, M.D., West, A.G., Gaszner, M. and Felsenfeld, G. (2002) Position-effect protection and enhancer blocking by the chicken beta-globin insulator are separable activities. Proc Natl Acad Sci USA, 99, 6883-6888. (Pubitemid 34526227)
-
(2002)
Proceedings of the National Academy of Sciences of the United States of America
, vol.99
, Issue.10
, pp. 6883-6888
-
-
Recillas-Targa, F.1
Pikaart, M.J.2
Burgess-Beusse, B.3
Bell, A.C.4
Litt, M.D.5
West, A.G.6
Gaszner, M.7
Felsenfeld, G.8
-
3
-
-
0029059215
-
Position-dependent variegation of globin transgene expression in mice
-
Robertson, G., Garrick, D., Wu, W., Kearns, M., Martin, D. and Whitelaw, E. (1995) Position-dependent variegation of globin transgene expression in mice. Proc. Natl Acad. Sci. USA, 92, 5371-5375.
-
(1995)
Proc. Natl Acad. Sci. USA
, vol.92
, pp. 5371-5375
-
-
Robertson, G.1
Garrick, D.2
Wu, W.3
Kearns, M.4
Martin, D.5
Whitelaw, E.6
-
4
-
-
0030136596
-
Dosage-dependent modification of position-effect variegation in Drosophila
-
Henikoff, S. (1996) Dosage-dependent modification of position-effect variegation in Drosophila. Bioessays, 18, 401-409. (Pubitemid 126599965)
-
(1996)
BioEssays
, vol.18
, Issue.5
, pp. 401-409
-
-
Henikoff, S.1
-
5
-
-
0032076461
-
Beyond the nucleosome: Epigenetic aspects of position-effect variegation in Drosophila
-
DOI 10.1016/S0092-8674(00)81159-9
-
Wakimoto, B.T. (1998) Beyond the nucleosome: epigenetic aspects of position-effect variegation in Drosophila. Cell, 93, 321-324. (Pubitemid 28232075)
-
(1998)
Cell
, vol.93
, Issue.3
, pp. 321-324
-
-
Wakimoto, B.T.1
-
6
-
-
0242298325
-
Maintenance of heterochromatin by RNA interference of tandem repeats
-
DOI 10.1038/ng1252
-
Martienssen, R.A. (2003) Maintenance of heterochromatin by RNA interference of tandem repeats. Nat. Genet., 35, 213-214. (Pubitemid 37363171)
-
(2003)
Nature Genetics
, vol.35
, Issue.3
, pp. 213-214
-
-
Martienssen, R.A.1
-
7
-
-
0033118880
-
Stopped at the border: Boundaries and insulators
-
DOI 10.1016/S0959-437X(99)80029-X
-
Bell, A.C. and Felsenfeld, G. (1999) Stopped at the border: boundaries and insulators. Curr. Opin. Genet. Dev., 9, 191-198. (Pubitemid 29158554)
-
(1999)
Current Opinion in Genetics and Development
, vol.9
, Issue.2
, pp. 191-198
-
-
Bell, A.C.1
Felsenfeld, G.2
-
9
-
-
0041878327
-
From DNA structure to gene expression: Mediators of nuclear compartmentalization and dynamics
-
DOI 10.1023/A:1024918525818
-
Bode, J., Goetze, S., Heng, H., Krawetz, S.A. and Benham, C. (2003) From DNA structure to gene expression: mediators of nuclear compartmentalization and dynamics. Chromosome Res., 11, 435-445. (Pubitemid 37041204)
-
(2003)
Chromosome Research
, vol.11
, Issue.5
, pp. 435-445
-
-
Bode, J.1
Goetze, S.2
Heng, H.3
Krawetz, S.A.4
Benham, C.5
-
10
-
-
0034103927
-
Transcriptional augmentation: Modulation of gene expression by scaffold/matrix-attached regions (S/MAR elements)
-
Bode, J., Benham, C., Knopp, A. and Mielke, C. (2000) Transcriptional augmentation: modulation of gene expression by scaffold/matrix-attached regions (S/MAR elements). Crit. Rev. Eukaryot. Gene Expr., 10, 73-90. (Pubitemid 30266177)
-
(2000)
Critical Reviews in Eukaryotic Gene Expression
, vol.10
, Issue.1
, pp. 73-90
-
-
Bode, J.1
Benham, C.2
Knopp, A.3
Mielke, C.4
-
11
-
-
0023516818
-
Improved methods for the isolation of individual and clustered mitotic chromosomes
-
DOI 10.1016/0014-4827(87)90334-X
-
Gasser, S.M. and Laemmli, U.K. (1987) Improved methods for the isolation of individual and clustered mitotic chromosomes. Exp. Cell Res., 173, 85-98. (Pubitemid 18011163)
-
(1987)
Experimental Cell Research
, vol.173
, Issue.1
, pp. 85-98
-
-
Gasser, S.M.1
Laemmli, U.K.2
-
12
-
-
0029584719
-
Scaffold/matrix-attached regions: Structural properties creating transcriptionally active loci
-
Bode, J., Schlake, T., Rios-Ramirez, M., Mielke, C., Stengert, M., Kay, V. and Klehr-Wirth, D. (1995) Scaffold/matrix-attached regions: structural properties creating transcriptionally active loci. Int. Rev. Cytol., 162A, 389-454. (Pubitemid 26034835)
-
(1995)
International Review of Cytology
, vol.162 A
, pp. 389-454
-
-
Bode, J.1
Schlake, T.2
Rios-Ramirez, M.3
Mielke, C.4
Stengert, M.5
Kay, V.6
Klehr-Wirth, D.7
-
13
-
-
0031214128
-
Chromatin domains and nuclear compartments: Establishing sites of gene expression in eukaryotic nuclei
-
DOI 10.1023/A:1006873614521
-
Jackson, D.A. (1997) Chromatin domains and nuclear compartments: establishing sites of gene expression in eukaryotic nuclei. Mol. Biol. Rep., 24, 209-220. (Pubitemid 27358374)
-
(1997)
Molecular Biology Reports
, vol.24
, Issue.3
, pp. 209-220
-
-
Jackson, D.A.1
-
14
-
-
0033370816
-
Interrelationships of transcriptional machinery with nuclear architecture
-
Stein, G.S., van Wijnen, A.J., Stein, J.L. and Lian, J.B. (1999) Interrelationships of transcriptional machinery with nuclear architecture. Crit. Rev. Eukaryot. Gene Expr., 9, 183-190. (Pubitemid 30053871)
-
(1999)
Critical Reviews in Eukaryotic Gene Expression
, vol.9
, Issue.3-4
, pp. 183-190
-
-
Stein, G.S.1
Van Wijnen, A.J.2
Stein, J.L.3
Lian, J.B.4
-
15
-
-
0034860007
-
Re-defining the chromatin loop domain
-
Heng, H.H., Krawetz, S.A., Lu, W., Bremer, S., Liu, G. and Ye, C.J. (2001) Re-defining the chromatin loop domain. Cytogenet. Cell Genet., 93, 155-161. (Pubitemid 32799797)
-
(2001)
Cytogenetics and Cell Genetics
, vol.93
, Issue.3-4
, pp. 155-161
-
-
Heng, H.H.Q.1
Krawetz, S.A.2
Lu, W.3
Bremer, S.4
Liu, G.5
Ye, C.J.6
-
16
-
-
1842584772
-
Chromatin loops are selectively anchored using scaffold/matrix-attachment regions
-
DOI 10.1242/jcs.00976
-
Heng, H.H., Goetze, S., Ye, C.J., Liu, G., Stevens, J.B., Bremer, S.W., Wykes, S.M., Bode, J. and Krawetz, S.A. (2004) Chromatin loops are selectively anchored using scaffold/matrix-attachment regions. J. Cell Sci., 117, 999-1008. (Pubitemid 38456082)
-
(2004)
Journal of Cell Science
, vol.117
, Issue.7
, pp. 999-1008
-
-
Heng, H.H.Q.1
Goetze, S.2
Ye, C.J.3
Liu, G.4
Stevens, J.B.5
Bremer, S.W.6
Wykes, S.M.7
Bode, J.8
Krawetz, S.A.9
-
17
-
-
0021675784
-
Organization of the higher-order chromatin loop: Specific DNA attachment sites on nuclear scaffold
-
Mirkovitch, J., Mirault, M.E. and Laemmli, U.K. (1984) Organization of the higher-order chromatin loop: specific DNA attachment sites on nuclear scaffold. Cell, 39, 223-232. (Pubitemid 15218240)
-
(1984)
Cell
, vol.39
, Issue.1
, pp. 223-232
-
-
Mirkovitch, J.1
Mirault, M.-E.2
Laemmli, U.K.3
-
18
-
-
9444232851
-
Boundary elements and nuclear organization
-
DOI 10.1016/j.biolcel.2004.06.004, PII S0248490004001492, Functional Architecture of the Cell Nucleus
-
Capelson, M. and Corces, V.G. (2004) Boundary elements and nuclear organization. Biol. Cell, 96, 617-629. (Pubitemid 39562236)
-
(2004)
Biology of the Cell
, vol.96
, Issue.8
, pp. 617-629
-
-
Capelson, M.1
Corces, V.G.2
-
19
-
-
0027215759
-
Nature of DNA sequences at the attachment regions of genes to the nuclear matrix
-
DOI 10.1002/jcb.240520104
-
Boulikas, T. (1993) Nature of DNA sequences at the attachment regions of genes to the nuclear matrix. J. Cell Biochem., 52, 14-22. (Pubitemid 23159863)
-
(1993)
Journal of Cellular Biochemistry
, vol.52
, Issue.1
, pp. 14-22
-
-
Boulikas, T.1
-
20
-
-
0024709616
-
Bent DNA is a structural feature of scaffold-attached regions in Drosophila melanogaster interphase nuclei
-
Homberger, H.P. (1989) Bent DNA is a structural feature of scaffold-attached regions in Drosophila melanogaster interphase nuclei. Chromosoma, 98, 99-104.
-
(1989)
Chromosoma
, vol.98
, pp. 99-104
-
-
Homberger, H.P.1
-
21
-
-
34548348766
-
Genome-wide prediction of matrix attachment regions that increase gene expression in mammalian cells
-
DOI 10.1038/nmeth1076, PII NMETH1076
-
Girod, P.A., Nguyen, D.Q., Calabrese, D., Puttini, S., Grandjean, M., Martinet, D., Regamey, A., Saugy, D., Beckmann, J.S., Bucher, P. et al. (2007) Genome-wide prediction of matrix attachment regions that increase gene expression in mammalian cells. Nat. Methods, 4, 747-753. (Pubitemid 47338170)
-
(2007)
Nature Methods
, vol.4
, Issue.9
, pp. 747-753
-
-
Girod, P.-A.1
Nguyen, D.-Q.2
Calabrese, D.3
Puttini, S.4
Grandjean, M.5
Martinet, D.6
Regamey, A.7
Saugy, D.8
Beckmann, J.S.9
Bucher, P.10
Mermod, N.11
-
22
-
-
33749349795
-
In-silico prediction and observations of nuclear matrix attachment
-
DOI 10.2478/s11658-006-0016-4
-
Platts, A.E., Quayle, A.K. and Krawetz, S.A. (2006) In-silico prediction and observations of nuclear matrix attachment. Cell Mol. Biol. Lett., 11, 191-213. (Pubitemid 44492477)
-
(2006)
Cellular and Molecular Biology Letters
, vol.11
, Issue.2
, pp. 191-213
-
-
Platts, A.E.1
Quayle, A.K.2
Krawetz, S.A.3
-
23
-
-
34147175089
-
A comparative study of S/MAR prediction tools
-
Evans, K., Ott, S., Hansen, A., Koentges, G. and Wernisch, L. (2007) A comparative study of S/MAR prediction tools. BMC Bioinformatics, 8, 71.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 71
-
-
Evans, K.1
Ott, S.2
Hansen, A.3
Koentges, G.4
Wernisch, L.5
-
24
-
-
53249138443
-
Anchoring the genome
-
Ottaviani, D., Lever, E., Takousis, P. and Sheer, D. (2008) Anchoring the genome. Genome Biol., 9, 201.
-
(2008)
Genome Biol.
, vol.9
, pp. 201
-
-
Ottaviani, D.1
Lever, E.2
Takousis, P.3
Sheer, D.4
-
25
-
-
26444589781
-
An inactive X specific replication origin associated with a matrix attachment region in the human X linked HPRT gene
-
DOI 10.1002/jcb.20425
-
Koina, E. and Piper, A. (2005) An inactive X specific replication origin associated with a matrix attachment region in the human X linked HPRT gene. J. Cell Biochem., 95, 391-402. (Pubitemid 41420207)
-
(2005)
Journal of Cellular Biochemistry
, vol.95
, Issue.2
, pp. 391-402
-
-
Koina, E.1
Piper, A.2
-
26
-
-
0037967525
-
Interaction of EBV latent origin of replication with the nuclear matrix: Identification of S/MAR sequences and protein components
-
DOI 10.1016/S0014-5793(03)00690-2
-
Mearini, G., Chichiarelli, S., Zampieri, M., Masciarelli, S., D'Erme, M., Ferraro, A. and Mattia, E. (2003) Interaction of EBV latent origin of replication with the nuclear matrix: identification of S/MAR sequences and protein components. FEBS Lett., 547, 119-124. (Pubitemid 36829390)
-
(2003)
FEBS Letters
, vol.547
, Issue.1-3
, pp. 119-124
-
-
Mearini, G.1
Chichiarelli, S.2
Zampieri, M.3
Masciarelli, S.4
D'Erme, M.5
Ferraro, A.6
Mattia, E.7
-
27
-
-
0024295412
-
Chromosomal ARS and CEN elements bind specifically to the yeast nuclear scaffold
-
Amati, B.B. and Gasser, S.M. (1988) Chromosomal ARS and CEN elements bind specifically to the yeast nuclear scaffold. Cell, 54, 967-978.
-
(1988)
Cell
, vol.54
, pp. 967-978
-
-
Amati, B.B.1
Gasser, S.M.2
-
28
-
-
0033555686
-
A vector based on the SV40 origin of replication and chromosomal S/MARs replicates episomally in CHO cells
-
DOI 10.1093/nar/27.2.426
-
Piechaczek, C., Fetzer, C., Baiker, A., Bode, J. and Lipps, H.J. (1999) A vector based on the SV40 origin of replication and chromosomal S/MARs replicates episomally in CHO cells. Nucleic Acids Res., 27, 426-428. (Pubitemid 29210004)
-
(1999)
Nucleic Acids Research
, vol.27
, Issue.2
, pp. 426-428
-
-
Piechaczek, C.1
Fetzer, C.2
Baiker, A.3
Bode, J.4
Lipps, H.J.5
-
29
-
-
3843139313
-
Nuclear scaffold/matrix attached region modules linked to a transcription unit are sufficient for replication and maintenance of a mammalian episome
-
DOI 10.1073/pnas.0401355101
-
Jenke, A.C., Stehle, I.M., Herrmann, F., Eisenberger, T., Baiker, A., Bode, J., Fackelmayer, F.O. and Lipps, H.J. (2004) Nuclear scaffold/matrix attached region modules linked to a transcription unit are sufficient for replication and maintenance of a mammalian episome. Proc. Natl Acad. Sci. USA, 101, 11322-11327. (Pubitemid 39038345)
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.31
, pp. 11322-11327
-
-
Jenke, A.C.W.1
Stehle, I.M.2
Herrmann, F.3
Eisenberger, T.4
Baiker, A.5
Bode, J.6
Fackelmayer, F.O.7
Lipps, H.J.8
-
30
-
-
0036682334
-
Evaluation sequence motifs found in scaffold/matrix-attached regions (S/MARs)
-
Liebich, I., Bode, J., Reuter, I. and Wingender, E. (2002) Evaluation of sequence motifs found in scaffold/matrix-attached regions (S/MARs). Nucleic Acids Res., 30, 3433-3442. (Pubitemid 34845940)
-
(2002)
Nucleic Acids Research
, vol.30
, Issue.15
, pp. 3433-3442
-
-
Liebich, I.1
Bode, J.2
Reuter, I.3
Wingender, E.4
-
31
-
-
0032571368
-
Thinking about a nuclear matrix
-
DOI 10.1006/jmbi.1997.1618
-
Pederson, T. (1998) Thinking about a nuclear matrix. J. Mol. Biol., 277, 147-159. (Pubitemid 28184161)
-
(1998)
Journal of Molecular Biology
, vol.277
, Issue.2
, pp. 147-159
-
-
Pederson, T.1
-
32
-
-
0038369968
-
Tissue-specific nuclear architecture and gene expession regulated by SATB1
-
DOI 10.1038/ng1146
-
Cai, S., Han, H.J. and Kohwi-Shigematsu, T. (2003) Tissue-specific nuclear architecture and gene expression regulated by SATB1. Nat. Genet., 34, 42-51. (Pubitemid 36548789)
-
(2003)
Nature Genetics
, vol.34
, Issue.1
, pp. 42-51
-
-
Cai, S.1
Han, H.-J.2
Kohwi-Shigematsu, T.3
-
33
-
-
0034618360
-
NP/NMP4 transcription factors have distinct osteoblast nuclear matrix subdomains
-
Feister, H.A., Torrungruang, K., Thunyakitpisal, P., Parker, G.E., Rhodes, S.J. and Bidwell, J.P. (2000) NP/NMP4 transcription factors have distinct osteoblast nuclear matrix subdomains. J. Cell Biochem., 79, 506-517.
-
(2000)
J. Cell Biochem.
, vol.79
, pp. 506-517
-
-
Feister, H.A.1
Torrungruang, K.2
Thunyakitpisal, P.3
Parker, G.E.4
Rhodes, S.J.5
Bidwell, J.P.6
-
34
-
-
0038487568
-
The insulator binding protein CTCF associates with the nuclear matrix
-
DOI 10.1016/S0014-4827(03)00185-X
-
Dunn, K.L., Zhao, H. and Davie, J.R. (2003) The insulator binding protein CTCF associates with the nuclear matrix. Exp. Cell Res., 288, 218-223. (Pubitemid 36871011)
-
(2003)
Experimental Cell Research
, vol.288
, Issue.1
, pp. 218-223
-
-
Dunn, K.L.1
Zhao, H.2
Davie, J.R.3
-
35
-
-
0034750803
-
Matrix attachment region-dependent function of the immunoglobulin mu enhancer involves histone acetylation at a distance without changes in enhancer occupancy
-
Fernandez, L.A., Winkler, M. and Grosschedl, R. (2001) Matrix attachment region-dependent function of the immunoglobulin mu enhancer involves histone acetylation at a distance without changes in enhancer occupancy. Mol. Cell. Biol., 21, 196-208.
-
(2001)
Ol. Cell. Biol.
, vol.21
, pp. 196-208
-
-
Fernandez, L.A.1
Winkler, M.2
Grosschedl, R.3
-
36
-
-
0037057668
-
SATB1 targets chromatin remodelling to regulate genes over long distances
-
Yasui, D., Miyano, M., Cai, S., Varga-Weisz, P. and Kohwi- Shigematsu, T. (2002) SATB1 targets chromatin remodelling to regulate genes over long distances. Nature, 419, 641-645.
-
(2002)
Nature
, vol.419
, pp. 641-645
-
-
Yasui, D.1
Miyano, M.2
Cai, S.3
Varga-Weisz, P.4
Kohwi- Shigematsu, T.5
-
37
-
-
0037986270
-
Recruitment of heterogeneous nuclear ribonucleoprotein A1 in vivo to the LMP/TAP region of the major histocompatibility complex
-
DOI 10.1074/jbc.M206621200
-
Donev, R., Horton, R., Beck, S., Doneva, T., Vatcheva, R., Bowen, W.R. and Sheer, D. (2003) Recruitment of heterogeneous nuclear ribonucleoprotein A1 in vivo to the LMP/TAP region of the major histocompatibility complex. J. Biol. Chem., 278, 5214-5226. (Pubitemid 36801034)
-
(2003)
Journal of Biological Chemistry
, vol.278
, Issue.7
, pp. 5214-5226
-
-
Donev, R.1
Horton, R.2
Beck, S.3
Doneva, T.4
Vatcheva, R.5
Bowen, W.R.6
Sheer, D.7
-
38
-
-
33745023808
-
Induction of immunoglobulin heavy-chain transcription through the transcription factor bright requires TFII-I
-
DOI 10.1128/MCB.02009-05
-
Rajaiya, J., Nixon, J.C., Ayers, N., Desgranges, Z.P., Roy, A.L. and Webb, C.F. (2006) Induction of immunoglobulin heavy-chain transcription through the transcription factor Bright requires TFII-I. Mol. Cell. Biol., 26, 4758-4768. (Pubitemid 43877590)
-
(2006)
Molecular and Cellular Biology
, vol.26
, Issue.12
, pp. 4758-4768
-
-
Rajaiya, J.1
Nixon, J.C.2
Ayers, N.3
Desgranges, Z.P.4
Roy, A.L.5
Webb, C.F.6
-
39
-
-
58549103309
-
MAR elements regulate the probability of epigenetic switching between active and inactive gene expression
-
Galbete, J.L., Buceta, M. and Mermod, N. (2009) MAR elements regulate the probability of epigenetic switching between active and inactive gene expression. Mol. Biosyst., 5, 143-150.
-
(2009)
Mol. Biosyst.
, vol.5
, pp. 143-150
-
-
Galbete, J.L.1
Buceta, M.2
Mermod, N.3
-
40
-
-
33644500399
-
Employing epigenetics to augment the expression of therapeutic proteins in mammalian cells
-
Kwaks, T.H. and Otte, A.P. (2006) Employing epigenetics to augment the expression of therapeutic proteins in mammalian cells. Trends Biotechnol., 24, 137-142.
-
(2006)
Trends Biotechnol.
, vol.24
, pp. 137-142
-
-
Kwaks, T.H.1
Otte, A.P.2
-
41
-
-
0033832638
-
Use of matrix attachment regions (MARs) to minimize transgene silencing
-
Allen, G.C., Spiker, S. and Thompson, W.F. (2000) Use of matrix attachment regions (MARs) to minimize transgene silencing. Plant Mol. Biol., 43, 361-376.
-
(2000)
Plant Mol. Biol.
, vol.43
, pp. 361-376
-
-
Allen, G.C.1
Spiker, S.2
Thompson, W.F.3
-
42
-
-
8644240165
-
Human matrix attachment regions are necessary for the establishment but not the maintenance of transgene insulation in Drosophila melanogaster
-
DOI 10.1128/MCB.24.23.10236-10245.2004
-
Namciu, S.J. and Fournier, R.E. (2004) Human matrix attachment regions are necessary for the establishment but not the maintenance of transgene insulation in Drosophila melanogaster. Mol. Cell. Biol., 24, 10236-10245. (Pubitemid 39507862)
-
(2004)
Molecular and Cellular Biology
, vol.24
, Issue.23
, pp. 10236-10245
-
-
Namciu, S.J.1
Fournier, R.E.K.2
-
43
-
-
0034088115
-
Human beta interferon scaffold attachment region inhibits de novo methylation and confers long-term, copy number-dependent expression to a retroviral vector
-
DOI 10.1128/JVI.74.6.2671-2678.2000
-
Dang, Q., Auten, J. and Plavec, I. (2000) Human beta interferon scaffold attachment region inhibits de novo methylation and confers long-term, copy number-dependent expression to a retroviral vector. J. Virol., 74, 2671-2678. (Pubitemid 30117577)
-
(2000)
Journal of Virology
, vol.74
, Issue.6
, pp. 2671-2678
-
-
Dang, Q.1
Auten, J.2
Plavec, I.3
-
44
-
-
0035057806
-
BRCA1 and BRCA2 and the genetics of breast and ovarian cancer
-
Welcsh, P.L. and King, M.C. (2001) BRCA1 and BRCA2 and the genetics of breast and ovarian cancer. Hum. Mol. Genet., 10, 705-713. (Pubitemid 32331579)
-
(2001)
Human Molecular Genetics
, vol.10
, Issue.7
, pp. 705-713
-
-
Welcsh, P.L.1
King, M.-C.2
-
45
-
-
5444235365
-
Breakpoint cluster regions of the AML-1 and ETO genes contain MAR elements and are preferentially associated with the nuclear matrix in proliferating HEL cells
-
DOI 10.1242/jcs.01332
-
Iarovaia, O.V., Shkumatov, P. and Razin, S.V. (2004) Breakpoint cluster regions of the AML-1 and ETO genes contain MAR elements and are preferentially associated with the nuclear matrix in proliferating HEL cells. J. Cell Sci., 117, 4583-4590. (Pubitemid 39360083)
-
(2004)
Journal of Cell Science
, vol.117
, Issue.19
, pp. 4583-4590
-
-
Iarovaia, O.V.1
Shkumatov, P.2
Razin, S.V.3
-
46
-
-
6044276845
-
HIV-1 integration sites are flanked by potential MARs that alone can act as promoters
-
DOI 10.1016/j.bbrc.2004.07.170, PII S0006291X04016407
-
Kulkarni, A., Pavithra, L., Rampalli, S., Mogare, D., Babu, K., Shiekh, G., Ghosh, S. and Chattopadhyay, S. (2004) HIV-1 integration sites are flanked by potential MARs that alone can act as promoters. Biochem. Biophys. Res. Commun., 322, 672-677. (Pubitemid 39490355)
-
(2004)
Biochemical and Biophysical Research Communications
, vol.322
, Issue.2
, pp. 672-677
-
-
Kulkarni, A.1
Pavithra, L.2
Rampalli, S.3
Mogare, D.4
Babu, K.5
Shiekh, G.6
Ghosh, S.7
Chattopadhyay, S.8
-
47
-
-
24144499181
-
Matrix attachment regions as targets for retroviral integration
-
Johnson, C.N. and Levy, L.S. (2005) Matrix attachment regions as targets for retroviral integration. Virol. J., 2, 68.
-
(2005)
Virol. J.
, vol.2
, pp. 68
-
-
Johnson, C.N.1
Levy, L.S.2
-
48
-
-
0024894099
-
Protein: DNA interactions at chromosomal loop attachment sites
-
Blasquez, V.C., Sperry, A.O., Cockerill, P.N. and Garrard, W.T. (1989) Protein: DNA interactions at chromosomal loop attachment sites. Genome, 31, 503-509. (Pubitemid 20118432)
-
(1989)
Genome
, vol.31
, Issue.2
, pp. 503-509
-
-
Blasquez, V.C.1
Sperry, A.O.2
Cockerill, P.N.3
Garrard, W.T.4
-
49
-
-
0024121519
-
Illegitimate recombination mediated by calf thymus DNA topoisomerase II in vitro
-
DOI 10.1073/pnas.85.7.2076
-
Bae, Y.S., Kawasaki, I., Ikeda, H. and Liu, L.F. (1988) Illegitimate recombination mediated by calf thymus DNA topoisomerase II in vitro. Proc. Natl Acad. Sci. USA, 85, 2076-2080. (Pubitemid 24315831)
-
(1988)
Proceedings of the National Academy of Sciences of the United States of America
, vol.85
, Issue.7
, pp. 2076-2080
-
-
Bae, Y.-S.1
Kawasaki, I.2
Ikeda, H.3
Liu, L.F.4
-
50
-
-
0030893115
-
Meiosis-specific DNA double-strand breaks are catalyzed by Spo11, a member of a widely conserved protein family
-
DOI 10.1016/S0092-8674(00)81876-0
-
Keeney, S., Giroux, C.N. and Kleckner, N. (1997) Meiosis-specific DNA double-strand breaks are catalyzed by Spo11, a member of a widely conserved protein family. Cell, 88, 375-384. (Pubitemid 27131379)
-
(1997)
Cell
, vol.88
, Issue.3
, pp. 375-384
-
-
Keeney, S.1
Giroux, C.N.2
Kleckner, N.3
-
51
-
-
21344449323
-
Use of the chicken lysozyme 5′ matrix attachment region to generate high producer CHO cell lines
-
DOI 10.1002/bit.20563
-
Girod, P.A., Zahn-Zabal, M. and Mermod, N. (2005) Use of the chicken lysozyme 50 matrix attachment region to generate high producer CHO cell lines. Biotechnol. Bioeng., 91, 1-11. (Pubitemid 40910747)
-
(2005)
Biotechnology and Bioengineering
, vol.91
, Issue.1
, pp. 1-11
-
-
Girod, P.-A.1
Zahn-Zabal, M.2
Mermod, N.3
-
52
-
-
0020574233
-
Deletion of the diploid dihydrofolate reductase locus from cultured mammalian cells
-
Urlaub, G., Kas, E., Carothers, A.M. and Chasin, L.A. (1983) Deletion of the diploid dihydrofolate reductase locus from cultured mammalian cells. Cell, 33, 405-412. (Pubitemid 13062492)
-
(1983)
Cell
, vol.33
, Issue.2
, pp. 405-412
-
-
Urlaub, G.1
Kas, E.2
Carothers, A.M.3
Chasin, L.A.4
-
53
-
-
0028960511
-
Defective DNA-dependent protein kinase activity is linked to V(D J recombination and DNA repair defects associated with the murine scid mutation
-
Blunt, T., Finnie, N.J., Taccioli, G.E., Smith, G.C., Demengeot, J., Gottlieb, T.M., Mizuta, R., Varghese, A.J., Alt, F.W., Jeggo, P.A. et al. (1995) Defective DNA-dependent protein kinase activity is linked to V(D)J recombination and DNA repair defects associated with the murine scid mutation. Cell, 80, 813-823.
-
(1995)
Cell
, vol.80
, pp. 813-823
-
-
Blunt, T.1
Finnie, N.J.2
Taccioli, G.E.3
Smith, G.C.4
Demengeot, J.5
Gottlieb, T.M.6
Mizuta, R.7
Varghese, A.J.8
Alt, F.W.9
Jeggo, P.A.10
-
54
-
-
33645014943
-
Repression of mutagenesis by Rad51D-mediated homologous recombination
-
Hinz, J.M., Tebbs, R.S., Wilson, P.F., Nham, P.B., Salazar, E.P., Nagasawa, H., Urbin, S.S., Bedford, J.S. and Thompson, L.H. (2006) Repression of mutagenesis by Rad51D-mediated homologous recombination. Nucleic Acids Res., 34, 1358-1368.
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 1358-1368
-
-
Hinz, J.M.1
Tebbs, R.S.2
Wilson, P.F.3
Nham, P.B.4
Salazar, E.P.5
Nagasawa, H.6
Urbin, S.S.7
Bedford, J.S.8
Thompson, L.H.9
-
55
-
-
30544448476
-
Genetic characterization of CHO production host DG44 and derivative recombinant cell lines
-
DOI 10.1016/j.bbrc.2005.12.111, PII S0006291X05027580
-
Derouazi, M., Martinet, D., Besuchet Schmutz, N., Flaction, R., Wicht, M., Bertschinger, M., Hacker, D.L., Beckmann, J.S. and Wurm, F.M. (2006) Genetic characterization of CHO production host DG44 and derivative recombinant cell lines. Biochem. Biophys. Res. Commun., 340, 1069-1077. (Pubitemid 43083387)
-
(2006)
Biochemical and Biophysical Research Communications
, vol.340
, Issue.4
, pp. 1069-1077
-
-
Derouazi, M.1
Martinet, D.2
Besuchet Schmutz, N.3
Flaction, R.4
Wicht, M.5
Bertschinger, M.6
Hacker, D.L.7
Beckmann, J.S.8
Wurm, F.M.9
-
56
-
-
0034706928
-
H19 gene expression is up-regulated exclusively by stabilization of the RNA during muscle cell differentiation
-
Milligan, L., Antoine, E., Bisbal, C., Weber, M., Brunel, C., Forne, T. and Cathala, G. (2000) H19 gene expression is up-regulated exclusively by stabilization of the RNA during muscle cell differentiation. Oncogene, 19, 5810-5816.
-
(2000)
Oncogene
, vol.19
, pp. 5810-5816
-
-
Milligan, L.1
Antoine, E.2
Bisbal, C.3
Weber, M.4
Brunel, C.5
Forne, T.6
Cathala, G.7
-
57
-
-
34248636498
-
Statistical significance of quantitative PCR
-
Karlen, Y., McNair, A., Perseguers, S., Mazza, C. and Mermod, N. (2007) Statistical significance of quantitative PCR. BMC Bioinformatics, 8, 131.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 131
-
-
Karlen, Y.1
McNair, A.2
Perseguers, S.3
Mazza, C.4
Mermod, N.5
-
58
-
-
34047108653
-
Cell cycle dependent transcription, a determinant factor of heterogeneity in cationic lipid-mediated transgene expression
-
DOI 10.1002/jgm.1010
-
Akita, H., Ito, R., Kamiya, H., Kogure, K. and Harashima, H. (2007) Cell cycle dependent transcription, a determinant factor of heterogeneity in cationic lipid-mediated transgene expression. J. Gene Med., 9, 197-207. (Pubitemid 46523537)
-
(2007)
Journal of Gene Medicine
, vol.9
, Issue.3
, pp. 197-207
-
-
Akita, H.1
Ito, R.2
Kamiya, H.3
Kogure, K.4
Harashima, H.5
-
59
-
-
0346094306
-
Improved recombinant gene expression in CHO cells using matrix attachment regions
-
DOI 10.1016/j.jbiotec.2003.09.015
-
Kim, J.M., Kim, J.S., Park, D.H., Kang, H.S., Yoon, J., Baek, K. and Yoon, Y. (2004) Improved recombinant gene expression in CHO cells using matrix attachment regions. J. Biotechnol., 107, 95-105. (Pubitemid 38058671)
-
(2004)
Journal of Biotechnology
, vol.107
, Issue.2
, pp. 95-105
-
-
Kim, J.-M.1
Kim, J.-S.2
Park, D.-H.3
Kang, H.S.4
Yoon, J.5
Baek, K.6
Yoon, Y.7
-
60
-
-
0021996533
-
Nonreciprocal exchanges on information between DNA duplexes coinjected into mammalian cell nuclei
-
Folger, K.R., Thomas, K. and Capecchi, M.R. (1985) Nonreciprocal exchanges of information between DNA duplexes coinjected into mammalian cell nuclei. Mol. Cell. Biol., 5, 59-69. (Pubitemid 15164270)
-
(1985)
Molecular and Cellular Biology
, vol.5
, Issue.1
, pp. 59-69
-
-
Folger, K.R.1
Thomas, K.2
Capecchi, M.R.3
-
61
-
-
0032574750
-
Homology-directed repair is a major double-strand break repair pathway in mammalian cells
-
DOI 10.1073/pnas.95.9.5172
-
Liang, F., Han, M., Romanienko, P.J. and Jasin, M. (1998) Homology-directed repair is a major double-strand break repair pathway in mammalian cells. Proc. Natl Acad. Sci. USA, 95, 5172-5177. (Pubitemid 28208570)
-
(1998)
Proceedings of the National Academy of Sciences of the United States of America
, vol.95
, Issue.9
, pp. 5172-5177
-
-
Liang, F.1
Han, M.2
Romanienko, P.J.3
Jasin, M.4
-
62
-
-
3242886313
-
Homologous recombination-mediated double-strand break repair
-
DOI 10.1016/j.dnarep.2004.03.037, PII S1568786404001090
-
Wyman, C., Ristic, D. and Kanaar, K. (2004) Homologous recombination-mediated double-strand break repair. DNA Repair, 3, 827-833. (Pubitemid 38997924)
-
(2004)
DNA Repair
, vol.3
, Issue.8-9
, pp. 827-833
-
-
Wyman, C.1
Ristic, D.2
Kanaar, R.3
-
63
-
-
0022638002
-
Analysis of homologous recombination in cultured mammalian cells in transient expression and stable transformation assays
-
DOI 10.1007/BF01560728
-
Wong, E.A. and Capecchi, M.R. (1986) Analysis of homologous recombination in cultured mammalian cells in transient expression and stable transformation assays. Somat. Cell Mol. Genet., 12, 63-72. (Pubitemid 16179359)
-
(1986)
Somatic Cell and Molecular Genetics
, vol.12
, Issue.1
, pp. 63-72
-
-
Wong, E.A.1
Capecchi, M.R.2
-
64
-
-
0032530658
-
Homologous recombination and non-homologous end-joining pathways of DNA double-strand break repair have overlapping roles in the maintenance of chromosomal integrity in vertebrate cells
-
DOI 10.1093/emboj/17.18.5497
-
Takata, M., Sasaki, M.S., Sonoda, E., Morrison, C., Hashimoto, M., Utsumi, H., Yamaguchi-Iwai, Y., Shinohara, A. and Takeda, S. (1998) Homologous recombination and non-homologous end-joining pathways of DNA double-strand break repair have overlapping roles in the maintenance of chromosomal integrity in vertebrate cells. EMBO J., 17, 5497-5508. (Pubitemid 28427063)
-
(1998)
EMBO Journal
, vol.17
, Issue.18
, pp. 5497-5508
-
-
Takata, M.1
Sasaki, M.S.2
Sonoda, E.3
Morrison, C.4
Hashimoto, M.5
Utsumi, H.6
Yamaguchi-Iwai, Y.7
Shinohara, A.8
Takeda, S.9
-
65
-
-
0036682122
-
An xrcc4 defect or Wortmannin stimulates homologous recombination specifically induced by double-strand breaks in mammalian cells
-
Delacote, F., Han, M., Stamato, T.D., Jasin, M. and Lopez, B.S. (2002) An xrcc4 defect or Wortmannin stimulates homologous recombination specifically induced by double-strand breaks in mammalian cells. Nucleic Acids Res., 30, 3454-3463. (Pubitemid 34851217)
-
(2002)
Nucleic Acids Research
, vol.30
, Issue.15
, pp. 3454-3463
-
-
Delacote, F.1
Han, M.2
Stamato, T.D.3
Jasin, M.4
Lopez, B.S.5
-
66
-
-
0035105722
-
Homologous recombinational repair of double-strand breaks in yeast is enhanced by MAT heterozygosity through yKU-dependent and -independent mechanisms
-
Clikeman, J.A., Khalsa, G.J., Barton, S.L. and Nickoloff, J.A. (2001) Homologous recombinational repair of double-strand breaks in yeast is enhanced by MAT heterozygosity through yKU-dependent and -independent mechanisms. Genetics, 157, 579-589. (Pubitemid 32165017)
-
(2001)
Genetics
, vol.157
, Issue.2
, pp. 579-589
-
-
Clikeman, J.A.1
Khalsa, G.J.2
Barton, S.L.3
Nickoloff, J.A.4
-
67
-
-
0037133699
-
DNA-dependent protein kinase suppresses double-strand break-induced and spontaneous homologous recombination
-
DOI 10.1073/pnas.052545899
-
Allen, C., Kurimasa, A., Brenneman, M.A., Chen, D.J. and Nickoloff, J.A. (2002) DNA-dependent protein kinase suppresses double-strand break-induced and spontaneous homologous recombination. Proc. Natl Acad. Sci. USA, 99, 3758-3763. (Pubitemid 34252179)
-
(2002)
Proceedings of the National Academy of Sciences of the United States of America
, vol.99
, Issue.6
, pp. 3758-3763
-
-
Allen, C.1
Kurimasa, A.2
Brenneman, M.A.3
Chen, D.J.4
Nickoloff, J.A.5
-
68
-
-
0035893363
-
Ku DNA end-binding protein modulates homologous repair of double-strand breaks in mammalian cells
-
DOI 10.1101/gad.946401
-
Pierce, A.J., Hu, P., Han, M., Ellis, N. and Jasin, M. (2001) Ku DNA end-binding protein modulates homologous repair of double-strand breaks in mammalian cells. Genes Dev., 15, 3237-3242. (Pubitemid 34008189)
-
(2001)
Genes and Development
, vol.15
, Issue.24
, pp. 3237-3242
-
-
Pierce, A.J.1
Hu, P.2
Han, M.3
Ellis, N.4
Jasin, M.5
-
69
-
-
0030922250
-
DNA-PK: At the cross-roads of biochemistry and genetics
-
DOI 10.1016/S0921-8777(97)00009-8, PII S0921877797000098
-
Jeggo, P.A. (1997) DNA-PK: at the cross-roads of biochemistry and genetics. Mutat Res., 384, 1-14. (Pubitemid 27248612)
-
(1997)
Mutation Research - DNA Repair
, vol.384
, Issue.1
, pp. 1-14
-
-
Jeggo, P.A.1
-
70
-
-
0033653716
-
Overview of vector design for mammalian gene expression
-
Kaufman, R.J. (2000) Overview of vector design for mammalian gene expression. Mol. Biotechnol., 16, 151-160.
-
(2000)
Mol. Biotechnol.
, vol.16
, pp. 151-160
-
-
Kaufman, R.J.1
-
71
-
-
60549102844
-
A study of monoclonal antibody-producing CHO cell lines: What makes a stable high producer?
-
Chusainow, J., Yang, Y.S., Yeo, J.H., Toh, P.C., Asvadi, P., Wong, N.S. and Yap, M.G. (2008) A study of monoclonal antibody-producing CHO cell lines: what makes a stable high producer? Biotechnology and Bioengineering, 102, 1182-1196.
-
(2008)
Biotechnology and Bioengineering
, vol.102
, pp. 1182-1196
-
-
Chusainow, J.1
Yang, Y.S.2
Yeo, J.H.3
Toh, P.C.4
Asvadi, P.5
Wong, N.S.6
Yap, M.G.7
-
72
-
-
0032128201
-
Conspiracy of silence among repeated transgenes
-
Henikoff, S. (1998) Conspiracy of silence among repeated transgenes. Bioessays, 20, 532-535. (Pubitemid 28362298)
-
(1998)
BioEssays
, vol.20
, Issue.7
, pp. 532-535
-
-
Henikoff, S.1
-
73
-
-
0038700698
-
Molecular views of recombination proteins and their control
-
DOI 10.1038/nrm1127
-
West, S.C. (2003) Molecular views of recombination proteins and their control. Nat. Rev. Mol. Cell Biol., 4, 435-445. (Pubitemid 36648589)
-
(2003)
Nature Reviews Molecular Cell Biology
, vol.4
, Issue.6
, pp. 435-445
-
-
West, S.C.1
-
74
-
-
0019353199
-
Transforming DNA integrates into the host chromosome
-
Robins, D.M., Ripley, S., Henderson, A.S. and Axel, R. (1981) Transforming DNA integrates into the host chromosome. Cell, 23, 29-39. (Pubitemid 11173606)
-
(1981)
Cell
, vol.23
, Issue.1
, pp. 29-39
-
-
Robins, D.M.1
Ripley, S.2
Henderson, A.S.3
Axel, R.4
-
75
-
-
0020396492
-
Patterns of integration of DNA microinjected into cultured mammalian cells: Evidence for homologous recombination between injected plasmid DNA molecules
-
Folger, K.R., Wong, E.A., Wahl, G. and Capecchi, M.R. (1982) Patterns of integration of DNA microinjected into cultured mammalian cells: evidence for homologous recombination between injected plasmid DNA molecules. Mol. Cell Biol., 2, 1372-1387. (Pubitemid 13203411)
-
(1982)
Molecular and Cellular Biology
, vol.2
, Issue.11
, pp. 1372-1387
-
-
Folger, K.R.1
Wong, E.A.2
Wahl, G.3
Capecchi, M.R.4
-
76
-
-
0022542596
-
High frequency targeting of genes to specific sites in the mammalian genome
-
Thomas, K.R., Folger, K.R. and Capecchi, M.R. (1986) High frequency targeting of genes to specific sites in the mammalian genome. Cell, 44, 419-428. (Pubitemid 16043333)
-
(1986)
Cell
, vol.44
, Issue.3
, pp. 419-428
-
-
Thomas, K.R.1
Folger, K.R.2
Capecchi, M.R.3
-
77
-
-
38649099106
-
Quantitative comparison of intracellular unpacking kinetics of polyplexes by a model constructed from quantum Dot-FRET
-
DOI 10.1038/sj.mt.6300392, PII 6300392
-
Chen, H.H., Ho, Y.P., Jiang, X., Mao, H.Q., Wang, T.H. and Leong, K.W. (2008) Quantitative comparison of intracellular unpacking kinetics of polyplexes by a model constructed from quantum dot-FRET. Mol. Ther., 16, 324-332. (Pubitemid 351168042)
-
(2008)
Molecular Therapy
, vol.16
, Issue.2
, pp. 324-332
-
-
Chen, H.H.1
Ho, Y.-P.2
Jiang, X.3
Mao, H.-Q.4
Wang, T.-H.5
Leong, K.W.6
-
78
-
-
0022399493
-
An intron-encoded protein is active in a gene conversion process that spreads an intron into a mitochondrial gene
-
Jacquier, A. and Dujon, B. (1985) An intron-encoded protein is active in a gene conversion process that spreads an intron into a mitochondrial gene. Cell, 41, 383-394. (Pubitemid 16219410)
-
(1985)
Cell
, vol.41
, Issue.2
, pp. 383-394
-
-
Jacquier, A.1
Dujon, B.2
-
79
-
-
0021053220
-
A site-specific endonuclease essential for mating-type switching in Saccaromyces cerevisiae
-
Kostriken, R., Strathern, J.N., Klar, A.J., Hicks, J.B. and Heffron, F. (1983) A site-specific endonuclease essential for mating-type switching in Saccharomyces cerevisiae. Cell, 35, 167-174. (Pubitemid 14240229)
-
(1983)
Cell
, vol.35
, Issue.1
, pp. 167-174
-
-
Kostriken, R.1
Strathern, J.N.2
Klar, A.J.S.3
-
80
-
-
0020541955
-
The double-strand-break repair model for recombination
-
Szostak, J.W., Orr-Weaver, T.L., Rothstein, R.J. and Stahl, F.W. (1983) The double-strand-break repair model for recombination. Cell, 33, 25-35. (Pubitemid 13096431)
-
(1983)
Cell
, vol.33
, Issue.1
, pp. 25-35
-
-
Szostak, J.W.1
Orr Weaver, T.L.2
Rothstein, R.J.3
-
81
-
-
0029598505
-
Double-strand breaks at the target locus stimulate gene targeting in embryonic stem cells
-
Smih, F., Rouet, P., Romanienko, P.J. and Jasin, M. (1995) Double-strand breaks at the target locus stimulate gene targeting in embryonic stem cells. Nucleic Acids Res., 23, 5012-5019. (Pubitemid 26012483)
-
(1995)
Nucleic Acids Research
, vol.23
, Issue.24
, pp. 5012-5019
-
-
Smih, F.1
Rouet, P.2
Romanienko, P.J.3
Jasin, M.4
-
82
-
-
0035883706
-
Homing endonucleases: Structural and functional insight into the catalysts of intron/intein mobility
-
Chevalier, B.S. and Stoddard, B.L. (2001) Homing endonucleases: structural and functional insight into the catalysts of intron/intein mobility. Nucleic Acids Res., 29, 3757-3774. (Pubitemid 32910517)
-
(2001)
Nucleic Acids Research
, vol.29
, Issue.18
, pp. 3757-3774
-
-
Chevalier, B.S.1
Stoddard, B.L.2
-
83
-
-
0026597313
-
Biological significance of unwinding capability of nuclear matrix-associating DNAs
-
Bode, J., Kohwi, Y., Dickinson, L., Joh, T., Klehr, D., Mielke, C. and Kohwi-Shigematsu, T. (1992) Biological significance of unwinding capability of nuclear matrix-associating DNAs. Science, 255, 195-197.
-
(1992)
Science
, vol.255
, pp. 195-197
-
-
Bode, J.1
Kohwi, Y.2
Dickinson, L.3
Joh, T.4
Klehr, D.5
Mielke, C.6
Kohwi-Shigematsu, T.7
-
84
-
-
33646507893
-
Correlations between scaffold/matrix attachment region (S/MAR) binding activity and DNA duplex destabilization energy
-
Bode, J., Winkelmann, S., Gotze, S., Spiker, S., Tsutsui, K., Bi, C., Prashanth, A.K. and Benham, C. (2006) Correlations between scaffold/matrix attachment region (S/MAR) binding activity and DNA duplex destabilization energy. J. Mol. Biol., 358, 597-613.
-
(2006)
J. Mol. Biol.
, vol.358
, pp. 597-613
-
-
Bode, J.1
Winkelmann, S.2
Gotze, S.3
Spiker, S.4
Tsutsui, K.5
Bi, C.6
Prashanth, A.K.7
Benham, C.8
|