-
1
-
-
0027215759
-
Nature of DNA sequences at the attachment regions of genes to the nuclear matrix
-
Boulikas, T. Nature of DNA sequences at the attachment regions of genes to the nuclear matrix. J. Cell. Biochem. 52 (1993) 14-22.
-
(1993)
J. Cell. Biochem.
, vol.52
, pp. 14-22
-
-
Boulikas, T.1
-
2
-
-
0013925189
-
On the occurrence of a fibrous lamina on the inner aspect of the nuclear envelope in certain cells of vertebrates
-
Fawcett, D.W. On the occurrence of a fibrous lamina on the inner aspect of the nuclear envelope in certain cells of vertebrates. Am. J. Anat. 119 (1966) 129-145.
-
(1966)
Am. J. Anat.
, vol.119
, pp. 129-145
-
-
Fawcett, D.W.1
-
3
-
-
0029175719
-
Nuclear matrix proteins as structural and functional components of the mitotic apparatus
-
He, D., Zeng, C. and Brinkley, B.R. Nuclear matrix proteins as structural and functional components of the mitotic apparatus. Int. Rev. Cytol. 162B (1995) 1-74.
-
(1995)
Int. Rev. Cytol.
, vol.162 B
, pp. 1-74
-
-
He, D.1
Zeng, C.2
Brinkley, B.R.3
-
4
-
-
10144230694
-
The architecture of chicken chromosome territories changes during differentiation
-
Stadler, S., Schnapp, V., Mayer, R., Stein, S., Cremer, C., Bonifer, C., Cremer, T and Dietzel, S. The architecture of chicken chromosome territories changes during differentiation. BMC Cell Biol. 5 (2004) 44.
-
(2004)
BMC Cell Biol.
, vol.5
, pp. 44
-
-
Stadler, S.1
Schnapp, V.2
Mayer, R.3
Stein, S.4
Cremer, C.5
Bonifer, C.6
Cremer, T.7
Dietzel, S.8
-
5
-
-
0035316574
-
Chromosome territories, nuclear architecture and gene regulation in mammalian cells
-
Cremer, T. and Cremer, C. Chromosome territories, nuclear architecture and gene regulation in mammalian cells. Nat. Rev. Genet. 2 (2001) 292-301.
-
(2001)
Nat. Rev. Genet.
, vol.2
, pp. 292-301
-
-
Cremer, T.1
Cremer, C.2
-
6
-
-
0033381420
-
Lamins and lamin-binding proteins in functional chromatin organization
-
Gotzmann, J. and Foisner, R. Lamins and lamin-binding proteins in functional chromatin organization. Crit. Rev. Eukaryot. Gene Expr. 9 (1999) 257-265.
-
(1999)
Crit. Rev. Eukaryot. Gene Expr.
, vol.9
, pp. 257-265
-
-
Gotzmann, J.1
Foisner, R.2
-
7
-
-
85010199401
-
-
Available from
-
Mika, S. NMP-db Available from: http://cubic.bioc.columbia.edu/db/nmpdb/.
-
NMP-db
-
-
Mika, S.1
-
8
-
-
0020162216
-
The nuclear matrix: Three-dimensional architecture and protein composition
-
Capco, D.G., Wan, K.M and Penman, S. The nuclear matrix: three-dimensional architecture and protein composition. Cell 29 (1982) 847-858.
-
(1982)
Cell
, vol.29
, pp. 847-858
-
-
Capco, D.G.1
Wan, K.M.2
Penman, S.3
-
9
-
-
0029918905
-
Purification and molecular cloning of the scaffold attachment factor B (SAF-B), a novel human nuclear protein that specifically binds to S/MAR-DNA
-
Renz, A. and Fackelmayer, F.O. Purification and molecular cloning of the scaffold attachment factor B (SAF-B), a novel human nuclear protein that specifically binds to S/MAR-DNA. Nucleic Acids Res. 24 (1996) 843-849.
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 843-849
-
-
Renz, A.1
Fackelmayer, F.O.2
-
10
-
-
0026526740
-
In vivo topoisomerase II cleavage of the Drosophila histone and satellite III repeats: DNA sequence and structural characteristics
-
Kas, E. and Laemmli, U.K. In vivo topoisomerase II cleavage of the Drosophila histone and satellite III repeats: DNA sequence and structural characteristics. Embo. J. 11 (1992) 705-716.
-
(1992)
Embo. J.
, vol.11
, pp. 705-716
-
-
Kas, E.1
Laemmli, U.K.2
-
11
-
-
0026758357
-
A tissue-specific MAR/SAR DNA-binding protein with unusual binding site recognition
-
Dickinson, L.A., Joh, T., Kohwi, Y. and Kohwi-Shigematsu, T. A tissue-specific MAR/SAR DNA-binding protein with unusual binding site recognition. Cell 70 (1992) 631-645.
-
(1992)
Cell
, vol.70
, pp. 631-645
-
-
Dickinson, L.A.1
Joh, T.2
Kohwi, Y.3
Kohwi-Shigematsu, T.4
-
12
-
-
0028880693
-
Mutually exclusive interaction of a novel matrix attachment region binding protein and the NF-muNR enhancer repressor. Implications for regulation of immunoglobulin heavy chain expression
-
Zong, R.T. and Scheuermann, R.H. Mutually exclusive interaction of a novel matrix attachment region binding protein and the NF-muNR enhancer repressor. Implications for regulation of immunoglobulin heavy chain expression. J. Biol. Chem. 270 (1995) 24010-24018.
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 24010-24018
-
-
Zong, R.T.1
Scheuermann, R.H.2
-
13
-
-
2942537834
-
The 5′-HS4 chicken beta-globin insulator is a CTCF-dependent nuclear matrix-associated element
-
Yusufzai, T.M. and Felsenfeld, G. The 5′-HS4 chicken beta-globin insulator is a CTCF-dependent nuclear matrix-associated element. Proc. Natl. Acad. Sci. U. S. A. 101 (2004) 8620-8624.
-
(2004)
Proc. Natl. Acad. Sci. U. S. A.
, vol.101
, pp. 8620-8624
-
-
Yusufzai, T.M.1
Felsenfeld, G.2
-
14
-
-
0023951297
-
Molecular and cellular biology of intermediate filaments
-
Steinert, P.M. and Roop, D.R. Molecular and cellular biology of intermediate filaments. Annu. Rev. Biochem. 57 (1988) 593-625.
-
(1988)
Annu. Rev. Biochem.
, vol.57
, pp. 593-625
-
-
Steinert, P.M.1
Roop, D.R.2
-
17
-
-
0014077688
-
Ultrastructural aspects of the ribonucleo-protein network in nuclei of Walker tumor and rat liver
-
Narayan, K.S., Steele, W.J., Smetana, K and Busch, H. Ultrastructural aspects of the ribonucleo-protein network in nuclei of Walker tumor and rat liver. Exp. Cell Res. 46 (1967) 65-77.
-
(1967)
Exp. Cell Res.
, vol.46
, pp. 65-77
-
-
Narayan, K.S.1
Steele, W.J.2
Smetana, K.3
Busch, H.4
-
18
-
-
0033538846
-
Association of chromosome territories with the nuclear matrix. Disruption of human chromosome territories correlates with the release of a subset of nuclear matrix proteins
-
Ma, H., Siegel, A.J and Berezney, R. Association of chromosome territories with the nuclear matrix. Disruption of human chromosome territories correlates with the release of a subset of nuclear matrix proteins. J. Cell Biol. 146 (1999) 531-542.
-
(1999)
J. Cell Biol.
, vol.146
, pp. 531-542
-
-
Ma, H.1
Siegel, A.J.2
Berezney, R.3
-
19
-
-
0034707596
-
Electron tomography reveals posttranscriptional binding of pre-mRNPs to specific fibers in the nucleoplasm
-
Miralles, F., Ofverstedt, L.G., Sabri, N., Aissouni, Y., Hellman, U., Skoglund, U and Visa, N. Electron tomography reveals posttranscriptional binding of pre-mRNPs to specific fibers in the nucleoplasm. J. Cell Biol. 148 (2000) 271-282.
-
(2000)
J. Cell Biol.
, vol.148
, pp. 271-282
-
-
Miralles, F.1
Ofverstedt, L.G.2
Sabri, N.3
Aissouni, Y.4
Hellman, U.5
Skoglund, U.6
Visa, N.7
-
20
-
-
0024221204
-
Visualization of a filamentous nucleoskeleton with a 23 nm axial repeat
-
Jackson, D.A. and Cook, P.R. Visualization of a filamentous nucleoskeleton with a 23 nm axial repeat. EMBO. J. 7 (1988) 3667-3677.
-
(1988)
EMBO. J.
, vol.7
, pp. 3667-3677
-
-
Jackson, D.A.1
Cook, P.R.2
-
21
-
-
0021966486
-
Localization of topoisomerase II in mitotic chromosomes
-
Earnshaw, W.C. and Heck, M.M. Localization of topoisomerase II in mitotic chromosomes. J. Cell Biol. 100 (1985) 1716-1725.
-
(1985)
J. Cell Biol.
, vol.100
, pp. 1716-1725
-
-
Earnshaw, W.C.1
Heck, M.M.2
-
22
-
-
0028512976
-
Nucleotide sequence of DNA isolated from protein cores of rosette-like structures (elementary chromomeres) of mouse interphase chromosomes
-
Glazkov, M.V., Poltaraus, A.B. and Lebedeva, I.A. Nucleotide sequence of DNA isolated from protein cores of rosette-like structures (elementary chromomeres) of mouse interphase chromosomes. Genetika 30 (1994) 1146-1154.
-
(1994)
Genetika
, vol.30
, pp. 1146-1154
-
-
Glazkov, M.V.1
Poltaraus, A.B.2
Lebedeva, I.A.3
-
23
-
-
0022120071
-
Isolation of rosette-like structures from partially deproteinized chromatin in rat hepatocytes
-
Prusov, A.N., Poliakov, V., Zatsepina, O.V., Fais, D. and Chentsov Iu, S. Isolation of rosette-like structures from partially deproteinized chromatin in rat hepatocytes. Tsitologiia 27 (1985) 1026-1030.
-
(1985)
Tsitologiia
, vol.27
, pp. 1026-1030
-
-
Prusov, A.N.1
Poliakov, V.2
Zatsepina, O.V.3
Fais, D.4
Chentsov Iu, S.5
-
24
-
-
2142765527
-
Nuclear architecture and genome functioning in plants and animals: What can we learn from both?
-
van Driel, R. and Fransz, P. Nuclear architecture and genome functioning in plants and animals: what can we learn from both? Exp. Cell Res. 296 (2004) 86-90.
-
(2004)
Exp. Cell Res.
, vol.296
, pp. 86-90
-
-
Van Driel, R.1
Fransz, P.2
-
25
-
-
0020956856
-
Synaptonemal complexes are integral components of the isolated mouse spermatocyte nuclear matrix
-
Ierardi, L.A., Moss, S.B. and Bellve, A.R. Synaptonemal complexes are integral components of the isolated mouse spermatocyte nuclear matrix. J. Cell Biol. 96 (1983) 1717-1726.
-
(1983)
J. Cell Biol.
, vol.96
, pp. 1717-1726
-
-
Ierardi, L.A.1
Moss, S.B.2
Bellve, A.R.3
-
26
-
-
0026670262
-
Relocation of nucleolar proteins around chromosomes at mitosis. A study by confocal laser scanning microscopy
-
Gautier, T., Robert-Nicoud, M., Guilly, M.N. and Hernandez-Verdun, D. Relocation of nucleolar proteins around chromosomes at mitosis. A study by confocal laser scanning microscopy. J. Cell Sci. 102 ( Pt 4) (1992) 729-737.
-
(1992)
J. Cell Sci.
, vol.102
, Issue.4 PART
, pp. 729-737
-
-
Gautier, T.1
Robert-Nicoud, M.2
Guilly, M.N.3
Hernandez-Verdun, D.4
-
27
-
-
0028384699
-
The chromosome periphery during mitosis
-
Hernandez-Verdun, D. and Gautier, T. The chromosome periphery during mitosis. Bioessays 16 (1994) 179-185.
-
(1994)
Bioessays
, vol.16
, pp. 179-185
-
-
Hernandez-Verdun, D.1
Gautier, T.2
-
28
-
-
0029620266
-
The nuclear matrix: A structural milieu for genomic function
-
Berezney, R., Mortillaro, M.J., Ma, H., Wei, X. and Samarabandu, J. The nuclear matrix: a structural milieu for genomic function. Int. Rev. Cytol. 162A (1995) 1-65.
-
(1995)
Int. Rev. Cytol.
, vol.162 A
, pp. 1-65
-
-
Berezney, R.1
Mortillaro, M.J.2
Ma, H.3
Wei, X.4
Samarabandu, J.5
-
29
-
-
0031009827
-
Chromatin dynamics in interphase nuclei and its implications for nuclear structure
-
Abney, J.R., Cutler, B., Fillbach, M.L., Axelrod, D. and Scalettar, B.A. Chromatin dynamics in interphase nuclei and its implications for nuclear structure. J. Cell Biol. 137 (1997) 1459-1468.
-
(1997)
J. Cell Biol.
, vol.137
, pp. 1459-1468
-
-
Abney, J.R.1
Cutler, B.2
Fillbach, M.L.3
Axelrod, D.4
Scalettar, B.A.5
-
30
-
-
0019169859
-
Supercoiled loops and eucaryotic DNA replicaton
-
Vogelstein, B., Pardoll, D.M. and Coffey, D.S. Supercoiled loops and eucaryotic DNA replicaton. Cell 22 (1980) 79-85.
-
(1980)
Cell
, vol.22
, pp. 79-85
-
-
Vogelstein, B.1
Pardoll, D.M.2
Coffey, D.S.3
-
31
-
-
0037901804
-
Nuclear matrix association of the human beta-globin locus utilizing a novel approach to quantitative real-time PCR
-
Ostermeier, G.C., Liu, Z., Martins, R.P., Bharadwaj, R.R., Ellis, J., Draghici, S. and Krawetz, S.A. Nuclear matrix association of the human beta-globin locus utilizing a novel approach to quantitative real-time PCR. Nucleic Acids Res. 31 (2003) 3257-3266.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3257-3266
-
-
Ostermeier, G.C.1
Liu, Z.2
Martins, R.P.3
Bharadwaj, R.R.4
Ellis, J.5
Draghici, S.6
Krawetz, S.A.7
-
32
-
-
0025181252
-
Hierarchical binding of DNA fragments derived from scaffold-attached regions: Correlation of properties in vitro and function in vivo
-
Mielke, C., Kohwi, Y., Kohwi-Shigematsu, T. and Bode, J. Hierarchical binding of DNA fragments derived from scaffold-attached regions: correlation of properties in vitro and function in vivo. Biochemistry 29 (1990) 7475-7485.
-
(1990)
Biochemistry
, vol.29
, pp. 7475-7485
-
-
Mielke, C.1
Kohwi, Y.2
Kohwi-Shigematsu, T.3
Bode, J.4
-
33
-
-
3543000446
-
Extended analysis of the region encompassing the PRM1→PRM2→TNP2 domain: Genomic organization, evolution and gene identification
-
Kramer, J.A., Adams, M.D., Singh, G.B., Doggett, N.A. and Krawetz, S.A. Extended analysis of the region encompassing the PRM1→PRM2→TNP2 domain: genomic organization, evolution and gene identification. J. Exp. Zool. 282 (1998) 245-253.
-
(1998)
J. Exp. Zool.
, vol.282
, pp. 245-253
-
-
Kramer, J.A.1
Adams, M.D.2
Singh, G.B.3
Doggett, N.A.4
Krawetz, S.A.5
-
34
-
-
0037131524
-
Setting the boundaries of chromatin domains and nuclear organization
-
Labrador, M. and Corces, V.G. Setting the boundaries of chromatin domains and nuclear organization. Cell 111 (2002) 151-154.
-
(2002)
Cell
, vol.111
, pp. 151-154
-
-
Labrador, M.1
Corces, V.G.2
-
35
-
-
0037529048
-
Transcription and the territory: The ins and outs of gene positioning
-
Williams, R.R. Transcription and the territory: the ins and outs of gene positioning. Trends Genet. 19 (2003) 298-302.
-
(2003)
Trends Genet.
, vol.19
, pp. 298-302
-
-
Williams, R.R.1
-
36
-
-
0035824395
-
Chromosome dynamics in the yeast interphase nucleus
-
Heun, P., Laroche, T., Shimada, K., Furrer, P and Gasser, S.M. Chromosome dynamics in the yeast interphase nucleus. Science 294 (2001) 2181-2186.
-
(2001)
Science
, vol.294
, pp. 2181-2186
-
-
Heun, P.1
Laroche, T.2
Shimada, K.3
Furrer, P.4
Gasser, S.M.5
-
37
-
-
0343593691
-
Nuclear pre-mRNA compartmentalization: Trafficking of released transcripts to splicing factor reservoirs
-
Melcak, I., Cermanova, S., Jirsova, K., Koberna, K., Malinsky, J. and Raska, I. Nuclear pre-mRNA compartmentalization: trafficking of released transcripts to splicing factor reservoirs. Mol. Biol. Cell 11 (2000) 497-510.
-
(2000)
Mol. Biol. Cell
, vol.11
, pp. 497-510
-
-
Melcak, I.1
Cermanova, S.2
Jirsova, K.3
Koberna, K.4
Malinsky, J.5
Raska, I.6
-
38
-
-
0036303722
-
HnRNP-A1 binds directly to double-stranded DNA in vitro within a 36 bp sequence
-
Donev, R.M., Doneva, T.A., Bowen, W.R. and Sheer, D. HnRNP-A1 binds directly to double-stranded DNA in vitro within a 36 bp sequence. Mol. Cell. Biochem. 233 (2002) 181-185.
-
(2002)
Mol. Cell. Biochem.
, vol.233
, pp. 181-185
-
-
Donev, R.M.1
Doneva, T.A.2
Bowen, W.R.3
Sheer, D.4
-
39
-
-
9444281491
-
Higher order chromatin architecture in the cell nucleus: On the way from structure to function
-
Cremer, T., Kupper, K., Dietzel, S and Fakan, S. Higher order chromatin architecture in the cell nucleus: on the way from structure to function. Biol. Cell 96 (2004) 555-567.
-
(2004)
Biol. Cell
, vol.96
, pp. 555-567
-
-
Cremer, T.1
Kupper, K.2
Dietzel, S.3
Fakan, S.4
-
40
-
-
24644442177
-
In Silico and wet-bench identification of nuclear matrix attachment regions
-
(Fennell, J.P., Baker, A.H., Eds.), Humana Press
-
Krawetz, S.A., Draghici, S., Goodrich, R., Liu, Z and Ostermeier, G.C., In Silico and wet-bench identification of nuclear matrix attachment regions. in: Hypertension, Methods and Protocols (Fennell, J.P., Baker, A.H., Eds.), Vol. 108, Humana Press, 2004, 439-458.
-
(2004)
Hypertension, Methods and Protocols
, vol.108
, pp. 439-458
-
-
Krawetz, S.A.1
Draghici, S.2
Goodrich, R.3
Liu, Z.4
Ostermeier, G.C.5
-
41
-
-
0029790641
-
Scaffold/matrix-attached regions: Topological switches with multiple regulatory functions
-
Bode, J., Stengert-Iber, M., Kay, V., Schlake, T and Dietz-Pfeilstetter, A. Scaffold/matrix-attached regions: topological switches with multiple regulatory functions. Crit. Rev. Eukaryot. Gene Expr. 6 (1996) 115-138.
-
(1996)
Crit. Rev. Eukaryot. Gene Expr.
, vol.6
, pp. 115-138
-
-
Bode, J.1
Stengert-Iber, M.2
Kay, V.3
Schlake, T.4
Dietz-Pfeilstetter, A.5
-
42
-
-
0032427490
-
Differentiation: The selective potentiation of chromatin domains
-
Kramer, J.A., McCarrey, J.R., Djakiew, D and Krawetz, S.A. Differentiation: the selective potentiation of chromatin domains. Development 125 (1998) 4749-4755.
-
(1998)
Development
, vol.125
, pp. 4749-4755
-
-
Kramer, J.A.1
McCarrey, J.R.2
Djakiew, D.3
Krawetz, S.A.4
-
43
-
-
0030010369
-
Boundary and insulator elements in chromosomes
-
Gerasimova, T.I. and Corces, V.G. Boundary and insulator elements in chromosomes. Curr. Opin. Genet. Dev. 6 (1996) 185-192.
-
(1996)
Curr. Opin. Genet. Dev.
, vol.6
, pp. 185-192
-
-
Gerasimova, T.I.1
Corces, V.G.2
-
44
-
-
0033546210
-
The organization of replication and transcription
-
Cook, P.R. The organization of replication and transcription. Science 284 (1999) 1790-1795.
-
(1999)
Science
, vol.284
, pp. 1790-1795
-
-
Cook, P.R.1
-
45
-
-
0034678432
-
Dynamics of DNA replication factories in living cells
-
Leonhardt, H., Rahn, H.P., Weinzierl, P., Sporbert, A., Cremer, T., Zink, D and Cardoso, M.C. Dynamics of DNA replication factories in living cells. J. Cell Biol. 149 (2000) 271-280.
-
(2000)
J. Cell Biol.
, vol.149
, pp. 271-280
-
-
Leonhardt, H.1
Rahn, H.P.2
Weinzierl, P.3
Sporbert, A.4
Cremer, T.5
Zink, D.6
Cardoso, M.C.7
-
46
-
-
0029739520
-
Scaffold attachment regions in centromere-associated DNA
-
Strissel, P.L., Espinosa, R., III, Rowley, J.D and Swift, H. Scaffold attachment regions in centromere-associated DNA. Chromosoma 105 (1996) 122-133.
-
(1996)
Chromosoma
, vol.105
, pp. 122-133
-
-
Strissel, P.L.1
Espinosa III, R.2
Rowley, J.D.3
Swift, H.4
-
47
-
-
1542317663
-
Lamin A/C deficiency causes defective nuclear mechanics and mechanotransduction
-
Lammerding, J., Schulze, P.C., Takahashi, T., Kozlov, S., Sullivan, T., Kamm, R.D., Stewart, C.L and Lee, R.T. Lamin A/C deficiency causes defective nuclear mechanics and mechanotransduction. J. Clin. Invest. 113 (2004) 370-378.
-
(2004)
J. Clin. Invest.
, vol.113
, pp. 370-378
-
-
Lammerding, J.1
Schulze, P.C.2
Takahashi, T.3
Kozlov, S.4
Sullivan, T.5
Kamm, R.D.6
Stewart, C.L.7
Lee, R.T.8
-
48
-
-
26944463127
-
Guanine tetraplex topology of human telomere DNA is governed by the number of (TTAGGG) repeats
-
Vorlickova, M., Chladkova, J., Kejnovska, I., Fialova, M and Kypr, J. Guanine tetraplex topology of human telomere DNA is governed by the number of (TTAGGG) repeats. Nucleic Acids Res. 33 (2005) 5851-5860.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 5851-5860
-
-
Vorlickova, M.1
Chladkova, J.2
Kejnovska, I.3
Fialova, M.4
Kypr, J.5
-
49
-
-
0013462065
-
A highly conserved repetitive DNA sequence, (TTAGGG)n, present at the telomeres of human chromosomes
-
Moyzis, R.K., Buckingham, J.M., Cram, L.S., Dani, M., Deaven, L.L., Jones, M.D., Meyne, J., Ratliff, R.L and Wu, J.R. A highly conserved repetitive DNA sequence, (TTAGGG)n, present at the telomeres of human chromosomes. Proc. Natl. Acad. Sci. U.S.A. 85 (1988) 6622-6626.
-
(1988)
Proc. Natl. Acad. Sci. U.S.A.
, vol.85
, pp. 6622-6626
-
-
Moyzis, R.K.1
Buckingham, J.M.2
Cram, L.S.3
Dani, M.4
Deaven, L.L.5
Jones, M.D.6
Meyne, J.7
Ratliff, R.L.8
Wu, J.R.9
-
50
-
-
0034835402
-
Specificity of SAF-A and lamin B binding in vitro correlates with the satellite DNA bending state
-
Lobov, I.B., Tsutsui, K., Mitchell, A.R and Podgornaya, O.I. Specificity of SAF-A and lamin B binding in vitro correlates with the satellite DNA bending state. J. Cell. Biochem. 83 (2001) 218-229.
-
(2001)
J. Cell. Biochem.
, vol.83
, pp. 218-229
-
-
Lobov, I.B.1
Tsutsui, K.2
Mitchell, A.R.3
Podgornaya, O.I.4
-
51
-
-
0036180490
-
In silico prediction of scaffold/matrix attachment regions in large genomic sequences
-
Frisch, M., Frech, K., Klingenhoff, A., Cartharius, K., Liebich, I and Werner, T. In silico prediction of scaffold/matrix attachment regions in large genomic sequences. Genome Res. 12 (2002) 349-354.
-
(2002)
Genome Res.
, vol.12
, pp. 349-354
-
-
Frisch, M.1
Frech, K.2
Klingenhoff, A.3
Cartharius, K.4
Liebich, I.5
Werner, T.6
-
52
-
-
0030741634
-
Mathematical model to predict regions of chromatin attachment to the nuclear matrix
-
Singh, G.B., Kramer, J.A and Krawetz, S.A. Mathematical model to predict regions of chromatin attachment to the nuclear matrix. Nucleic Acids Res. 25 (1997) 1419-1425.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 1419-1425
-
-
Singh, G.B.1
Kramer, J.A.2
Krawetz, S.A.3
-
53
-
-
0033565260
-
A bipartite sequence element associated with matrix/scaffold attachment regions
-
van Drunen, C.M., Sewalt, R.G., Oosterling, R.W., Weisbeek, P.J., Smeekens, S.C and van Driel, R. A bipartite sequence element associated with matrix/scaffold attachment regions. Nucleic Acids Res. 27 (1999) 2924-2930.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 2924-2930
-
-
Van Drunen, C.M.1
Sewalt, R.G.2
Oosterling, R.W.3
Weisbeek, P.J.4
Smeekens, S.C.5
Van Driel, R.6
-
54
-
-
3042667241
-
Genome-wide in silico mapping of scaffold/matrix attachment regions in Arabidopsis suggests correlation of intragenic scaffold/matrix attachment regions with gene expression
-
Rudd, S., Frisch, M., Grote, K., Meyers, B.C., Mayer, K and Werner, T. Genome-wide in silico mapping of scaffold/matrix attachment regions in Arabidopsis suggests correlation of intragenic scaffold/matrix attachment regions with gene expression. Plant Physiol. 135 (2004) 715-722.
-
(2004)
Plant Physiol.
, vol.135
, pp. 715-722
-
-
Rudd, S.1
Frisch, M.2
Grote, K.3
Meyers, B.C.4
Mayer, K.5
Werner, T.6
-
55
-
-
0029861894
-
Multiple DNA and protein sequence alignment based on segment-to-segment comparison
-
Morgenstern, B., Dress, A and Werner, T. Multiple DNA and protein sequence alignment based on segment-to-segment comparison. Proc. Natl. Acad. Sci. U.S.A. 93 (1996) 12098-12103.
-
(1996)
Proc. Natl. Acad. Sci. U.S.A.
, vol.93
, pp. 12098-12103
-
-
Morgenstern, B.1
Dress, A.2
Werner, T.3
-
56
-
-
0014757386
-
A general method applicable to the search for similarities in the amino acid sequence of two proteins
-
Needleman, S.B. and Wunsch, C.D. A general method applicable to the search for similarities in the amino acid sequence of two proteins. J. Mol. Biol. 48 (1970) 443-453.
-
(1970)
J. Mol. Biol.
, vol.48
, pp. 443-453
-
-
Needleman, S.B.1
Wunsch, C.D.2
-
57
-
-
0028971143
-
MatInd and MatInspector: New fast and versatile tools for detection of consensus matches in nucleotide sequence data
-
Quandt, K., Frech, K., Karas, H., Wingender, E and Werner, T. MatInd and MatInspector: new fast and versatile tools for detection of consensus matches in nucleotide sequence data. Nucleic Acids Res. 23 (1995) 4878-4884.
-
(1995)
Nucleic Acids Res.
, vol.23
, pp. 4878-4884
-
-
Quandt, K.1
Frech, K.2
Karas, H.3
Wingender, E.4
Werner, T.5
-
58
-
-
0029867505
-
Identification of functional elements in unaligned nucleic acid sequences by a novel tuple search algorithm
-
Wolfertstetter, F., Frech, K., Herrmann, G and Werner, T. Identification of functional elements in unaligned nucleic acid sequences by a novel tuple search algorithm. Comput. Appl. Biosci. 12 (1996) 71-80.
-
(1996)
Comput. Appl. Biosci.
, vol.12
, pp. 71-80
-
-
Wolfertstetter, F.1
Frech, K.2
Herrmann, G.3
Werner, T.4
-
60
-
-
0030287008
-
Fast text searching for regular expressions or automaton searching on tries
-
RA Baeza-Yates, G.G. Fast text searching for regular expressions or automaton searching on tries. Journal of the A.C.M. 43 (1996) 915-936.
-
(1996)
Journal of the A.C.M.
, vol.43
, pp. 915-936
-
-
RA Baeza-Yates, G.G.1
-
61
-
-
0037986270
-
Recruitment of heterogeneous nuclear ribonucleoprotein A1 in vivo to the LMP/TAP region of the major histocompatibility complex
-
Donev, R., Horton, R., Beck, S., Doneva, T., Vatcheva, R., Bowen, W.R and Sheer, D. Recruitment of heterogeneous nuclear ribonucleoprotein A1 in vivo to the LMP/TAP region of the major histocompatibility complex. J. Biol. Chem. 278 (2003) 5214-5226.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 5214-5226
-
-
Donev, R.1
Horton, R.2
Beck, S.3
Doneva, T.4
Vatcheva, R.5
Bowen, W.R.6
Sheer, D.7
-
62
-
-
4444337094
-
Stress-induced DNA duplex destabilization (SIDD) in the E. coli genome: SIDD sites are closely associated with promoters
-
Wang, H., Noordewier, M and Benham, C.J. Stress-induced DNA duplex destabilization (SIDD) in the E. coli genome: SIDD sites are closely associated with promoters. Genome Res. 14 (2004) 1575-1584.
-
(2004)
Genome Res.
, vol.14
, pp. 1575-1584
-
-
Wang, H.1
Noordewier, M.2
Benham, C.J.3
-
63
-
-
3142731457
-
WebSIDD: Server for predicting stress-induced duplex destabilized (SIDD) sites in superhelical DNA
-
Bi, C. and Benham, C.J. WebSIDD: server for predicting stress-induced duplex destabilized (SIDD) sites in superhelical DNA. Bioinformatics 20 (2004) 1477-1479.
-
(2004)
Bioinformatics
, vol.20
, pp. 1477-1479
-
-
Bi, C.1
Benham, C.J.2
-
64
-
-
3142725514
-
The analysis of stress-induced duplex destabilization in long genomic DNA sequences
-
Benham, C.J. and Bi, C. The analysis of stress-induced duplex destabilization in long genomic DNA sequences. J. Comput. Biol. 11 (2004) 519-543.
-
(2004)
J. Comput. Biol.
, vol.11
, pp. 519-543
-
-
Benham, C.J.1
Bi, C.2
-
65
-
-
0030690098
-
Stress-induced duplex DNA destabilization in scaffold/matrix attachment regions
-
Benham, C., Kohwi-Shigematsu, T and Bode, J. Stress-induced duplex DNA destabilization in scaffold/matrix attachment regions. J. Mol. Biol. 274 (1997) 181-196.
-
(1997)
J. Mol. Biol.
, vol.274
, pp. 181-196
-
-
Benham, C.1
Kohwi-Shigematsu, T.2
Bode, J.3
-
66
-
-
0026597313
-
Biological significance of unwinding capability of nuclear matrix-associating DNAs
-
Bode, J., Kohwi, Y., Dickinson, L., Joh, T., Klehr, D., Mielke, C and Kohwi-Shigematsu, T. Biological significance of unwinding capability of nuclear matrix-associating DNAs. Science 255 (1992) 195-197.
-
(1992)
Science
, vol.255
, pp. 195-197
-
-
Bode, J.1
Kohwi, Y.2
Dickinson, L.3
Joh, T.4
Klehr, D.5
Mielke, C.6
Kohwi-Shigematsu, T.7
-
67
-
-
0033840558
-
Analysis of the chicken DNA fragments that contain structural sites of attachment to the nuclear matrix: DNA-matrix interactions and replication
-
Vassetzky, Y.S., Bogdanova, A.N and Razin, S.V. Analysis of the chicken DNA fragments that contain structural sites of attachment to the nuclear matrix: DNA-matrix interactions and replication. J. Cell. Biochem. 79 (2000) 1-14.
-
(2000)
J. Cell. Biochem.
, vol.79
, pp. 1-14
-
-
Vassetzky, Y.S.1
Bogdanova, A.N.2
Razin, S.V.3
-
68
-
-
2442606618
-
DNA replication initiates at domains overlapping with nuclear matrix attachment regions in the xenopus and mouse c-myc promoter
-
Girard-Reydet, C., Gregoire, D., Vassetzky, Y and Mechali, M. DNA replication initiates at domains overlapping with nuclear matrix attachment regions in the xenopus and mouse c-myc promoter. Gene 332 (2004) 129-138.
-
(2004)
Gene
, vol.332
, pp. 129-138
-
-
Girard-Reydet, C.1
Gregoire, D.2
Vassetzky, Y.3
Mechali, M.4
-
69
-
-
0037059611
-
Nuclear envelope breakdown proceeds by microtubule-induced tearing of the lamina
-
Beaudouin, J., Gerlich, D., Daigle, N., Eils, R and Ellenberg, J. Nuclear envelope breakdown proceeds by microtubule-induced tearing of the lamina. Cell 108 (2002) 83-96.
-
(2002)
Cell
, vol.108
, pp. 83-96
-
-
Beaudouin, J.1
Gerlich, D.2
Daigle, N.3
Eils, R.4
Ellenberg, J.5
-
70
-
-
0035228292
-
Stress-induced DNA duplex destabilization in transcriptional initiation
-
Benham, C.J. Stress-induced DNA duplex destabilization in transcriptional initiation. Pac. Symp. Biocomput. (2001) 103-114.
-
(2001)
Pac. Symp. Biocomput.
, pp. 103-114
-
-
Benham, C.J.1
-
71
-
-
0005586873
-
Torsional stress and local denaturation in supercoiled DNA
-
Benham, C.J. Torsional stress and local denaturation in supercoiled DNA. Proc. Natl. Acad. Sci. U.S.A. 76 (1979) 3870-3874.
-
(1979)
Proc. Natl. Acad. Sci. U.S.A.
, vol.76
, pp. 3870-3874
-
-
Benham, C.J.1
-
72
-
-
0001215523
-
Exact method for numerically analyzing a model of local denaturation in superhelically stressed DNA
-
Fye, R.M. and Benham, C.J. Exact method for numerically analyzing a model of local denaturation in superhelically stressed DNA. Phys. Rev. E. 59 (1999) 3408-3426.
-
(1999)
Phys. Rev. E.
, vol.59
, pp. 3408-3426
-
-
Fye, R.M.1
Benham, C.J.2
-
73
-
-
73849083550
-
The approximate algorithm for analysis of the strand separation transition in super helical DNA using nearest neighbor energetics
-
Chengpeng Bi , C.J.B. The approximate algorithm for analysis of the strand separation transition in super helical DNA using nearest neighbor energetics. Proceedings of the IEEE Computer Society Conference on Bioinformatics (2003) 460.
-
(2003)
Proceedings of the IEEE Computer Society Conference on Bioinformatics
, pp. 460
-
-
Chengpeng Bi, C.J.B.1
-
74
-
-
0034139621
-
Computer prediction of sites associated with various elements of the nuclear matrix
-
Rogozin, I.B., Glazko, G.V and Glazkov, M.V. Computer prediction of sites associated with various elements of the nuclear matrix. Brief. Bioinform. 1 (2000) 33-44.
-
(2000)
Brief. Bioinform.
, vol.1
, pp. 33-44
-
-
Rogozin, I.B.1
Glazko, G.V.2
Glazkov, M.V.3
-
75
-
-
0035895841
-
Comparative study and prediction of DNA fragments associated with various elements of the nuclear matrix
-
Glazko, G.V., Rogozin, I.B and Glazkov, M.V. Comparative study and prediction of DNA fragments associated with various elements of the nuclear matrix. Biochim. Biophys. Acta 1517 (2001) 351-364.
-
(2001)
Biochim. Biophys. Acta
, vol.1517
, pp. 351-364
-
-
Glazko, G.V.1
Rogozin, I.B.2
Glazkov, M.V.3
-
76
-
-
3943098268
-
-
(Dietterich, T., Ed.), 2nd edition, MIT Press, Cambridge, Mass
-
Baldi, P. and Brunak, S. Bioinformatics: the machine learning approach: Adaptive computation and machine learning. (Dietterich, T., Ed.), 2nd edition, MIT Press, Cambridge, Mass., 2001, 1-452.
-
(2001)
Bioinformatics: The Machine Learning Approach: Adaptive Computation and Machine Learning
, pp. 1-452
-
-
Baldi, P.1
Brunak, S.2
-
77
-
-
0032447167
-
A matrix associated region localizes the human SOCS-1 gene to chromosome 16p13.13
-
Kramer, J.A., Adams, M.D., Singh, G.B., Doggett, N.A and Krawetz, S.A. A matrix associated region localizes the human SOCS-1 gene to chromosome 16p13.13. Somat. Cell Mol. Genet. 24 (1998) 131-133.
-
(1998)
Somat. Cell Mol. Genet.
, vol.24
, pp. 131-133
-
-
Kramer, J.A.1
Adams, M.D.2
Singh, G.B.3
Doggett, N.A.4
Krawetz, S.A.5
-
78
-
-
0033713806
-
Data Mining for Discovering Matrix Association Regions (MARs)
-
(Dasarathy, B.V.E., Ed.), Proceedings of Spie
-
Singh, G.B. and Krawetz, S.A., Data Mining for Discovering Matrix Association Regions (MARs). in: Data mining and knowledge discovery: theory, toolsand technology II. (Dasarathy, B.V.E., Ed.), Proceedings of Spie, (2000) 330-341.
-
(2000)
Data Mining and Knowledge Discovery: Theory, Toolsand Technology II
, pp. 330-341
-
-
Singh, G.B.1
Krawetz, S.A.2
-
79
-
-
21044445780
-
Large-scale identification and mapping of nuclear matrix-attachment regions in the distal imprinted domain of mouse chromosome 7
-
Purbowasito, W., Suda, C., Yokomine, T., Zubair, M., Sado, T., Tsutsui, K and Sasaki, H. Large-scale identification and mapping of nuclear matrix-attachment regions in the distal imprinted domain of mouse chromosome 7. DNA Res. 11 (2004) 391-407.
-
(2004)
DNA Res.
, vol.11
, pp. 391-407
-
-
Purbowasito, W.1
Suda, C.2
Yokomine, T.3
Zubair, M.4
Sado, T.5
Tsutsui, K.6
Sasaki, H.7
-
80
-
-
0033062960
-
Electrostatic-undulatory theory of plectonemically supercoiled DNA
-
Ubbink, J. and Odijk, T. Electrostatic-undulatory theory of plectonemically supercoiled DNA. Biophys. J. 76 (1999) 2502-2519.
-
(1999)
Biophys. J.
, vol.76
, pp. 2502-2519
-
-
Ubbink, J.1
Odijk, T.2
-
81
-
-
0023368794
-
A three-dimensional approach to mitotic chromosome structure: Evidence for a complex hierarchical organization
-
Belmont, A.S., Sedat, J.W and Agard, D.A. A three-dimensional approach to mitotic chromosome structure: evidence for a complex hierarchical organization. J. Cell Biol. 105 (1987) 77-92.
-
(1987)
J. Cell Biol.
, vol.105
, pp. 77-92
-
-
Belmont, A.S.1
Sedat, J.W.2
Agard, D.A.3
|