메뉴 건너뛰기




Volumn 65, Issue 11, 2011, Pages 3126-3137

High-dimensional variance partitioning reveals the modular genetic basis of adaptive divergence in gene expression during reproductive character displacement

Author keywords

Adaptation; G. matrix; Gene expression; Reinforcement

Indexed keywords

HYDROCARBON;

EID: 80054878507     PISSN: 00143820     EISSN: 15585646     Source Type: Journal    
DOI: 10.1111/j.1558-5646.2011.01371.x     Document Type: Article
Times cited : (11)

References (53)
  • 2
    • 0000513344 scopus 로고
    • What should be done when an estimated between-group covariance matrix is not nonnegative definite?
    • Amemiya, Y. 1985. What should be done when an estimated between-group covariance matrix is not nonnegative definite? Am. Stat. 39:112-117.
    • (1985) Am. Stat , vol.39 , pp. 112-117
    • Amemiya, Y.1
  • 3
    • 0011039030 scopus 로고
    • Testing the dimensionality in the multivariate analysis of variance
    • Anderson, T. W., and Y. Amemiya 1991. Testing the dimensionality in the multivariate analysis of variance. Stat. Prob. Lett. 12:445-463.
    • (1991) Stat. Prob. Lett , vol.12 , pp. 445-463
    • Anderson, T.W.1    Amemiya, Y.2
  • 5
    • 45249095384 scopus 로고    scopus 로고
    • Mapping gene expression quantitative trait loci by singular value decomposition and independent component analysis
    • Biswas, S., J. D. Storey, and J. M. Akey 2008. Mapping gene expression quantitative trait loci by singular value decomposition and independent component analysis. BMC Bioinform. 9:244.
    • (2008) BMC Bioinform. , vol.9 , pp. 244
    • Biswas, S.1    Storey, J.D.2    Akey, J.M.3
  • 6
    • 33845703005 scopus 로고    scopus 로고
    • A tale of two matrices: multivariate approaches in evolutionary biology
    • Blows, M. W. 2007. A tale of two matrices: multivariate approaches in evolutionary biology. J. Evol. Biol. 20:1-8.
    • (2007) J. Evol. Biol. , vol.20 , pp. 1-8
    • Blows, M.W.1
  • 7
    • 1842711883 scopus 로고    scopus 로고
    • Orientation of the genetic variance-covariance matrix and the fitness surface for multiple male sexually selected traits
    • Blows, M. W., S. F. Chenoweth, and E. Hine 2004. Orientation of the genetic variance-covariance matrix and the fitness surface for multiple male sexually selected traits. Am. Nat. 163:329-340.
    • (2004) Am. Nat. , vol.163 , pp. 329-340
    • Blows, M.W.1    Chenoweth, S.F.2    Hine, E.3
  • 8
    • 84928086866 scopus 로고
    • Character displacement
    • Brown, W. L, and E. O. Wilson 1956. Character displacement. Syst. Zool. 5:49-65.
    • (1956) Syst. Zool. , vol.5 , pp. 49-65
    • Brown, W.L.1    Wilson, E.O.2
  • 9
    • 46149104377 scopus 로고    scopus 로고
    • Evo-devo and an expanding evolutionary synthesis: a genetic theory of morphological evolution
    • Carroll, S. B. 2008. Evo-devo and an expanding evolutionary synthesis: a genetic theory of morphological evolution. Cell 134:25-36.
    • (2008) Cell , vol.134 , pp. 25-36
    • Carroll, S.B.1
  • 10
    • 20144386111 scopus 로고    scopus 로고
    • Complex trait analysis of gene expression uncovers polygenic and pleiotropic networks that modulate nervous system function
    • Chesler, E. J., L. Lu, S. Shou, Y. Qu, J. Gu, J. Wang, H. C. Hsu, J. D. Mountz, N. Baldwin, M. A. Langston, et al. 2005. Complex trait analysis of gene expression uncovers polygenic and pleiotropic networks that modulate nervous system function. Nat. Genet. 37:233-242.
    • (2005) Nat. Genet. , vol.37 , pp. 233-242
    • Chesler, E.J.1    Lu, L.2    Shou, S.3    Qu, Y.4    Gu, J.5    Wang, J.6    Hsu, H.C.7    Mountz, J.D.8    Baldwin, N.9    Langston, M.A.10
  • 11
    • 0031829657 scopus 로고    scopus 로고
    • Sex-related genes directional sexual selection and speciation
    • Civetta, A. and R. S. Singh 1998. Sex-related genes directional sexual selection and speciation. Mol. Biol. Evol. 15:901-909.
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 901-909
    • Civetta, A.1    Singh, R.S.2
  • 12
    • 0030052176 scopus 로고    scopus 로고
    • Quantitative genetic analysis of cranial morphology in the cotton-top (Saguinus oedipus) and saddle-back (S. fuscicollis) tamarins
    • Cheverud, J.M. 1996. Quantitative genetic analysis of cranial morphology in the cotton-top (Saguinus oedipus) and saddle-back (S. fuscicollis) tamarins. J. Evol. Biol. 9:5-42.
    • (1996) J. Evol. Biol. , vol.9 , pp. 5-42
    • Cheverud, J.M.1
  • 13
    • 62549160956 scopus 로고    scopus 로고
    • Genomic consequences of background effects on scalloped mutant expressivity in the wing of Drosophila melanogaster
    • Dworkin, I., E. Kennerly, D. Tack, J. Hutchinson, J. Brown, J. Mahaffey, and G. Gibson 2009. Genomic consequences of background effects on scalloped mutant expressivity in the wing of Drosophila melanogaster. Genetics 181:1065-1076.
    • (2009) Genetics , vol.181 , pp. 1065-1076
    • Dworkin, I.1    Kennerly, E.2    Tack, D.3    Hutchinson, J.4    Brown, J.5    Mahaffey, J.6    Gibson, G.7
  • 14
    • 67650766675 scopus 로고    scopus 로고
    • Mutations in many genes affect aggressive behavior in Drosophila melanogaster
    • Edwards, A. C., L. Zwarts, A. Yamamoto, P. Callaerts, and T. F. Mackay 2009. Mutations in many genes affect aggressive behavior in Drosophila melanogaster. BMC Biol. 7:29.
    • (2009) BMC Biol , vol.7 , pp. 29
    • Edwards, A.C.1    Zwarts, L.2    Yamamoto, A.3    Callaerts, P.4    Mackay, T.F.5
  • 16
    • 33746061277 scopus 로고    scopus 로고
    • Global gene expression in Escherichia coli K-12 during short-term and long-term adaptation to glucose-limited continuous culture conditions
    • Franchini, A. G., and T. Egli 2006. Global gene expression in Escherichia coli K-12 during short-term and long-term adaptation to glucose-limited continuous culture conditions. Microbiology 152:2111-2127.
    • (2006) Microbiology , vol.152 , pp. 2111-2127
    • Franchini, A.G.1    Egli, T.2
  • 17
    • 62349114020 scopus 로고    scopus 로고
    • An expressed sequence tag (EST) library for Drosophila serrata a model system for sexual selection and climatic adaptation studies
    • Frentiu, F. D., M. Adamski, E. A. McGraw, M. W. Blows, and S. F. Chenoweth 2009. An expressed sequence tag (EST) library for Drosophila serrata a model system for sexual selection and climatic adaptation studies. BMC Genom. 10:40.
    • (2009) BMC Genom , vol.10 , pp. 40
    • Frentiu, F.D.1    Adamski, M.2    McGraw, E.A.3    Blows, M.W.4    Chenoweth, S.F.5
  • 18
    • 4644370178 scopus 로고    scopus 로고
    • Extensive sex-specific nonadditivity of Gene Expression in Drosophila melanogaster
    • Gibson, G., R. Riley-Berger, L. Harshman, A. Kopp, S. Vacha, S. Nuzhdin, and M. Wayne 2004. Extensive sex-specific nonadditivity of Gene Expression in Drosophila melanogaster. Genetics 167:1791-1799
    • (2004) Genetics , vol.167 , pp. 1791-1799
    • Gibson, G.1    Riley-Berger, R.2    Harshman, L.3    Kopp, A.4    Vacha, S.5    Nuzhdin, S.6    Wayne, M.7
  • 19
    • 47249142778 scopus 로고    scopus 로고
    • Revealing the architecture of gene regulation: the promise of eQTL studies
    • Gilad, Y., S. A. Rifkin, and J. K. Pritchard 2008. Revealing the architecture of gene regulation: the promise of eQTL studies. Trend. Genet. 24:408-415.
    • (2008) Trend. Genet , vol.24 , pp. 408-415
    • Gilad, Y.1    Rifkin, S.A.2    Pritchard, J.K.3
  • 20
    • 33846581918 scopus 로고    scopus 로고
    • Statistical epistasis is a generic feature of gene regulatory networks
    • Gjuvsland, A. B., B. J. Hayes, S. W. Omholt, and O. Carlborg 2007. Statistical epistasis is a generic feature of gene regulatory networks. Genetics 175:411-420.
    • (2007) Genetics , vol.175 , pp. 411-420
    • Gjuvsland, A.B.1    Hayes, B.J.2    Omholt, S.W.3    Carlborg, O.4
  • 21
    • 0037402339 scopus 로고    scopus 로고
    • Is modularity necessary for evolvability? Remarks on the relationship between pleiotropy and evolvability
    • Hansen T. F. 2003. Is modularity necessary for evolvability? Remarks on the relationship between pleiotropy and evolvability. BioSystematics 69:83-94.
    • (2003) BioSystematics , vol.69 , pp. 83-94
    • Hansen, T.F.1
  • 22
    • 34548150431 scopus 로고    scopus 로고
    • Are traits that experience reinforcement also under sexual selection?
    • Higgie, M., and M. W. Blows 2007. Are traits that experience reinforcement also under sexual selection? Am. Nat. 170:409-420.
    • (2007) Am. Nat , vol.170 , pp. 409-420
    • Higgie, M.1    Blows, M.W.2
  • 23
    • 43049121051 scopus 로고    scopus 로고
    • The evolution of reproductive character displacement conflicts with how sexual selection operates within a species
    • Higgie, M., and M. W. Blows 2008. The evolution of reproductive character displacement conflicts with how sexual selection operates within a species. Evolution 62:1192-1203.
    • (2008) Evolution , vol.62 , pp. 1192-1203
    • Higgie, M.1    Blows, M.W.2
  • 24
    • 0033756076 scopus 로고    scopus 로고
    • Natural selection and the reinforcement of mate recognition
    • Higgie, M., S. F. Chenoweth, and M. W. Blows 2000. Natural selection and the reinforcement of mate recognition. Science 290:519-521.
    • (2000) Science , vol.290 , pp. 519-521
    • Higgie, M.1    Chenoweth, S.F.2    Blows, M.W.3
  • 25
    • 33745354724 scopus 로고    scopus 로고
    • The effective dimensionality of the genetic variance-covariance matrix
    • Hine, E., and M. W. Blows 2006. The effective dimensionality of the genetic variance-covariance matrix. Genetics 173:1135-1144.
    • (2006) Genetics , vol.173 , pp. 1135-1144
    • Hine, E.1    Blows, M.W.2
  • 26
    • 79952753899 scopus 로고    scopus 로고
    • Natural selection stops the evolution of male attractiveness
    • Hine, E, K. McGuigan, and M.W. Blows 2011. Natural selection stops the evolution of male attractiveness. Proc. Natl. Acad. Sci. USA 108:3659-3664.
    • (2011) Proc. Natl. Acad. Sci. USA , vol.108 , pp. 3659-3664
    • Hine, E.1    McGuigan, K.2    Blows, M.W.3
  • 27
    • 34247855863 scopus 로고    scopus 로고
    • The locus of evolution: evo devo and the genetics of adaptation
    • Hoekstra, H. E., and J. A. Coyne 2007. The locus of evolution: evo devo and the genetics of adaptation. Evolution 61:995-1016.
    • (2007) Evolution , vol.61 , pp. 995-1016
    • Hoekstra, H.E.1    Coyne, J.A.2
  • 28
    • 0002783726 scopus 로고
    • Reinforcement: origin, dynamics, and fate of an evolutionary hypothesis
    • in R. G. Harrison, ed. Oxford Univ. Press, New York
    • Howard, D. J. 1993. Reinforcement: origin, dynamics, and fate of an evolutionary hypothesis. Pp. 46-69 in R. G. Harrison, ed. Hybrid zones and the evolutionary process. Oxford Univ. Press, New York
    • (1993) Hybrid zones and the evolutionary process , pp. 46-69
    • Howard, D.J.1
  • 29
    • 76549110852 scopus 로고    scopus 로고
    • Numbering the hairs on our heads: The shared challenge and promise of phenomics
    • Houle, D. 2010. Numbering the hairs on our heads: The shared challenge and promise of phenomics. Proc. Natl. Acad. Sci. USA 107:1793-1799.
    • (2010) Proc. Natl. Acad. Sci. USA , vol.107 , pp. 1793-1799
    • Houle, D.1
  • 30
    • 33745224102 scopus 로고    scopus 로고
    • From genetical genomics to systems genetics: potential applications in quantitative genomics and animal breeding
    • Kadarmideen, H. N., P. von Rohr, and L. L. G. Janss 2006. From genetical genomics to systems genetics: potential applications in quantitative genomics and animal breeding. Mammal Genom. 17:548-564.
    • (2006) Mammal Genom. , vol.17 , pp. 548-564
    • Kadarmideen, H.N.1    von Rohr, P.2    Janss, L.L.G.3
  • 31
    • 55749086039 scopus 로고    scopus 로고
    • Natural variation in gene expression between wild and weedy populations of Helianthus annuus
    • Lai, Z., N. C. Kane, Y. Zou, and L. H. Rieseberg 2008. Natural variation in gene expression between wild and weedy populations of Helianthus annuus. Genetics 179:1881-1890.
    • (2008) Genetics , vol.179 , pp. 1881-1890
    • Lai, Z.1    Kane, N.C.2    Zou, Y.3    Rieseberg, L.H.4
  • 32
    • 66149119826 scopus 로고    scopus 로고
    • Modularity and interactions in the genetics of gene expression
    • Litvin, O., H. Causton, B.-J. Chen, and D. Pe'er 2009. Modularity and interactions in the genetics of gene expression. Proc. Natl. Acad. Sci. USA 106:6441-6446.
    • (2009) Proc. Natl. Acad. Sci. USA , vol.106 , pp. 6441-6446
    • Litvin, O.1    Causton, H.2    Chen, B.-J.3    Pe'er, D.4
  • 33
    • 34547396004 scopus 로고    scopus 로고
    • The frailty of adaptive hypotheses for the origins of organismal complexity
    • Lynch, M. 2007. The frailty of adaptive hypotheses for the origins of organismal complexity. Proc. Natl. Acad. Sci. USA 104:8597-8604.
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 8597-8604
    • Lynch, M.1
  • 36
    • 4344610577 scopus 로고    scopus 로고
    • Genes regulated by mating sperm or seminal proteins in mated female Drosophila melanogaster
    • McGraw L. A., G. Gibson, A. G. Clark, and M. F. Wolfner 2004. Genes regulated by mating sperm or seminal proteins in mated female Drosophila melanogaster. Curr. Biol. 14:1509-1514.
    • (2004) Curr. Biol , vol.14 , pp. 1509-1514
    • McGraw, L.A.1    Gibson, G.2    Clark, A.G.3    Wolfner, M.F.4
  • 37
    • 58149330808 scopus 로고    scopus 로고
    • Perils of parsimony: properties of reduced-rank estimates of genetic covariance matrices
    • Meyer, K., and M. Kirkpatrick 2008. Perils of parsimony: properties of reduced-rank estimates of genetic covariance matrices. Genetics 180:1153-1166.
    • (2008) Genetics , vol.180 , pp. 1153-1166
    • Meyer, K.1    Kirkpatrick, M.2
  • 38
    • 19544380541 scopus 로고    scopus 로고
    • The dimensionality of genetic variation for wing shape in Drosophila melanogaster
    • Mezey, J. G., and D. Houle 2005. The dimensionality of genetic variation for wing shape in Drosophila melanogaster. Evolution 59:1027-1038.
    • (2005) Evolution , vol.59 , pp. 1027-1038
    • Mezey, J.G.1    Houle, D.2
  • 39
    • 13144257707 scopus 로고    scopus 로고
    • The genetic theory of adaptation: a brief history
    • Orr, H. A. 2005. The genetic theory of adaptation: a brief history. Nat. Rev. Genet. 6:119-127.
    • (2005) Nat. Rev. Genet , vol.6 , pp. 119-127
    • Orr, H.A.1
  • 40
    • 0037504137 scopus 로고    scopus 로고
    • Sex-dependent gene expression and evolution of the Drosophila transcriptome
    • Ranz, J. M., C. I. Castillo-Davis, C. D. Meiklejohn, and D. L. Hartl 2003. Sex-dependent gene expression and evolution of the Drosophila transcriptome. Science 300:1742-1745.
    • (2003) Science , vol.300 , pp. 1742-1745
    • Ranz, J.M.1    Castillo-Davis, C.I.2    Meiklejohn, C.D.3    Hartl, D.L.4
  • 42
    • 40149096663 scopus 로고    scopus 로고
    • The evolution of gene expression QTL in Saccharomyces cerevisiae
    • Ronald, J. and J. M. Akey 2007. The evolution of gene expression QTL in Saccharomyces cerevisiae. PloS ONE 2:e678.
    • (2007) PloS ONE , vol.2
    • Ronald, J.1    Akey, J.M.2
  • 43
    • 49849085260 scopus 로고    scopus 로고
    • Phenotypic plasticity and genotype by environment interaction for olfactory behavior in Drosophila melanogaster
    • Sambandan, D., M. A. Carbone, R. R. H. Anholt, and T. E. C. Mackay 2008. Phenotypic plasticity and genotype by environment interaction for olfactory behavior in Drosophila melanogaster. Genetics 179:1079-1088.
    • (2008) Genetics , vol.179 , pp. 1079-1088
    • Sambandan, D.1    Carbone, M.A.2    Anholt, R.R.H.3    Mackay, T.E.C.4
  • 44
    • 69349099315 scopus 로고    scopus 로고
    • Rapid evolution of sex pheromone-producing enzyme expression in Drosophila
    • Shirangi, T.R., H. D. Dufour, T. M. Williams, and S. B. Carroll 2009. Rapid evolution of sex pheromone-producing enzyme expression in Drosophila. PloS Biol. 7:e1000168.
    • (2009) PloS Biol , vol.7
    • Shirangi, T.R.1    Dufour, H.D.2    Williams, T.M.3    Carroll, S.B.4
  • 46
    • 41149111974 scopus 로고    scopus 로고
    • The transcriptomics of life-history trade-offs in whitefish species pairs (Coregonus sp.)
    • St-Cyr, J., N. Derome, and L. Bernatchez 2008. The transcriptomics of life-history trade-offs in whitefish species pairs (Coregonus sp.). Mol. Ecol. 17:1850-1870.
    • (2008) Mol. Ecol , vol.17 , pp. 1850-1870
    • St-Cyr, J.1    Derome, N.2    Bernatchez, L.3
  • 47
    • 67149122033 scopus 로고    scopus 로고
    • Modulated modularity clustering as an exploratory tool for functional genomic inference
    • Stone, E.A., and J. F. Ayroles 2009. Modulated modularity clustering as an exploratory tool for functional genomic inference. PloS Genet. 5:e1000479
    • (2009) PloS Genet. , vol.5
    • Stone, E.A.1    Ayroles, J.F.2
  • 48
    • 0042424602 scopus 로고    scopus 로고
    • Statistical significance for genome-wide experiments
    • Storey, J.D., and R. Tibshirani 2003. Statistical significance for genome-wide experiments. Proc. Natl. Acad. Sci. USA 100: 9440-9445.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 9440-9445
    • Storey, J.D.1    Tibshirani, R.2
  • 49
    • 76249110585 scopus 로고    scopus 로고
    • Abundant genetic variation + strong selection = multivariate genetic constraints: a geometric view of adaptation
    • Walsh, B., and M. W. Blows 2009. Abundant genetic variation + strong selection = multivariate genetic constraints: a geometric view of adaptation. Ann. Rev. Ecol. Evol. Syst. 40:41-59.
    • (2009) Ann. Rev. Ecol. Evol. Syst. , vol.40 , pp. 41-59
    • Walsh, B.1    Blows, M.W.2
  • 50
    • 34249055193 scopus 로고    scopus 로고
    • Global eQTL mapping reveals the complex genetic architecture of transcript-level variation in Arabidopsis
    • West, M. A. L., K. Kim, D. J. Kliebenstein, H. van Leeuwen, R. W. Michelmore, R. W. Doerge, and D. A. St. Clair 2007. Global eQTL mapping reveals the complex genetic architecture of transcript-level variation in Arabidopsis. Genetics 175:1441-1450.
    • (2007) Genetics , vol.175 , pp. 1441-1450
    • West, M.A.L.1    Kim, K.2    Kliebenstein, D.J.3    van Leeuwen, H.4    Michelmore, R.W.5    Doerge, R.W.6    Clair, D.A.S.7
  • 51
    • 0032787555 scopus 로고    scopus 로고
    • Microarray analysis of Drosophila development during metamorphosis
    • White, K. P., S. A. Rifkin, P. Hurban, and D. S. Hogness 1999. Microarray analysis of Drosophila development during metamorphosis. Science 286:2179-2184.
    • (1999) Science , vol.286 , pp. 2179-2184
    • White, K.P.1    Rifkin, S.A.2    Hurban, P.3    Hogness, D.S.4
  • 52
    • 15544382418 scopus 로고    scopus 로고
    • Joint mapping of quantitative trait loci for multiple binary characters
    • Xu, C. W., Z. K. Li, and S. Z. Xu 2005. Joint mapping of quantitative trait loci for multiple binary characters. Genetics 169:1045-1059.
    • (2005) Genetics , vol.169 , pp. 1045-1059
    • Xu, C.W.1    Li, Z.K.2    Xu, S.Z.3
  • 53
    • 66349105934 scopus 로고    scopus 로고
    • Effective but costly evolved mechanisms of defense against a virulent opportunistic pathogen in Drosophila melanogaster
    • Ye, Y. H., S. F. Chenoweth, and E. A. McGraw 2009. Effective but costly evolved mechanisms of defense against a virulent opportunistic pathogen in Drosophila melanogaster. PLoS Pathog. 5:e10000385.
    • (2009) PLoS Pathog , vol.5
    • Ye, Y.H.1    Chenoweth, S.F.2    McGraw, E.A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.