Force-clamp measurements of receptor–ligand interactions

Methods in Molecular Biology

Volumn 736, Issue , 2011, Pages 331-353

  Rico, Félix ^a   Chu, Calvin ^b   Moy, Vincent T ^b  

^a INSTITUT CURIE   (France)

^b UNIVERSITY OF MIAMI MILLER SCHOOL OF MEDICINE   (United States)

Author keywords

Adhesion; Affinity; Atomic force microscope; Bell model; Binding strength; Dynamic force spectroscopy; Force clamp; Molecular interactions; Single molecule

Indexed keywords

BIOTIN; LIGAND; RECEPTOR; STREPTAVIDIN;

COMPLEX FORMATION; FORCE SPECTROSCOPY; PROTEIN PROTEIN INTERACTION; ARTICLE; ATOMIC FORCE MICROSCOPY; CHEMISTRY; KINETICS; METABOLISM; METHODOLOGY; PROTEIN BINDING; PROTEIN FOLDING; SURFACE PROPERTY;

BIOTIN; KINETICS; LIGANDS; MICROSCOPY, ATOMIC FORCE; PROTEIN BINDING; PROTEIN FOLDING; STREPTAVIDIN; SURFACE PROPERTIES;

EID: 80054842434     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-61779-105-5_20     Document Type: Chapter

References (71)

1. Bell, G. I. (1978) Models for Specific Adhesion of Cells to Cells, Science 200, 618–627.
2. Moy, V. T., Florin, E. L., and Gaub, H. E. (1994) Intermolecular Forces and Energies Between Ligands and Receptors, Science 266, 257–259.
3. Florin, E. L., Moy, V. T., and Gaub, H. E. (1994) Adhesion Forces Between Individual Ligand-Receptor Pairs, Science 264, 415–417.
4. Lee, G. U., Kidwell, D. A., and Colton, R. J. (1994) Sensing Discrete Streptavidin Biotin Interactions with Atomic-Force Microscopy, Langmuir 10, 354–357.
5. Evans, E., and Ritchie, K. (1997) Dynamic strength of molecular adhesion bonds, Biophys. J. 72, 1541–1555.
6. Benoit, M., Gabriel, D., Gerisch, G., and Gaub, H. E. (2000) Discrete interactions in cell adhesion measured by single-molecule force spectroscopy, Nature Cell Biology 2, 313–317.
7. Zhang, X. H., Wojcikiewicz, E., and Moy, V. T. (2002) Force spectroscopy of the leukocyte function-associated antigen-1/intercellular adhesion molecule-1 interaction, Biophysical Journal 83, 2270–2279.
8. Hinterdorfer, P., Baumgartner, W., Gruber, H. J., Schilcher, K., and Schindler, H. (1996) Detection and localization of individual antibody-antigen recognition events by atomic force microscopy, Proc Natl Acad Sci U S A 93, 3477–3481.
9. Dufrene, Y. F., and Hinterdorfer, P. (2008) Recent progress in AFM molecular recognition studies, Pflugers Arch 456, 237–245.
10. Muller, D. J., Helenius, J., Alsteens, D., and Dufrene, Y. F. (2009) Force probing surfaces of living cells to molecular resolution, Nat Chem Biol 5, 383–390.
11. Merkel, R., Nassoy, P., Leung, A., Ritchie, K., and Evans, E. (1999) Energy landscapes of receptor-ligand bonds explored with dynamic force spectroscopy, Nature 397, 50–53.
12. Li, F. Y., Redick, S. D., Erickson, H. P., and Moy, V. T. (2003) Force measurements of the alpha(5)beta(1) integrin-fibronectin interaction, Biophys.J. 84, 1252–1262.
13. Dudko, O. K., Hummer, G., and Szabo, A. (2006) Intrinsic rates and activation free energies from single-molecule pulling experiments, Phys.Rev.Lett. 96.
14. Hummer, G., and Szabo, A. (2001) Free energy reconstruction from nonequilibrium single-molecule pulling experiments, Proc Natl Acad Sci U S A 98, 3658–3661.
15. Dudko, O. K., Hummer, G., and Szabo, A. (2008) Theory, analysis, and interpretation of single-molecule force spectroscopy experiments, Proc Natl Acad Sci U S A 105, 15755–15760.
16. Freund, L. B. (2009) Characterizing the resistance generated by a molecular bond as it is forcibly separated, Proceedings of the National Academy of Sciences 106, 8818–8823.
17. Sulchek, T. A., Friddle, R. W., Langry, K., Lau, E. Y., Albrecht, H., Ratto, T. V., DeNardo, S. J., Colvin, M. E., and Noy, A. (2005) Dynamic force spectroscopy of parallel individual Mucin1-antibody bonds, Proc.Natl. Acad.Sci.U.S.A. 102, 16638–16643.
18. Oberhauser, A. F., Hansma, P. K., Carrion-Vazquez, M., and Fernandez, J. M. (2001) Stepwise unfolding of titin under force-clamp atomic force microscopy, Proc. Natl. Acad. Sci. USA 98, 468–472.
19. Marshall, B. T., Long, M., Piper, J. W., Yago, T., McEver, R. P., and Zhu, C. (2003) Direct observation of catch bonds involving cell-adhesion molecules, Nature 423, 190–193.
20. Marshall, B. T., Sarangapani, K. K., Lou, J. H., McEver, R. P., and Zhu, C. (2005) Force history dependence of receptor-ligand dissociation, Biophys. J. 88, 1458–1466.
21. Pincet, F., and Husson, J. (2005) The solution to the streptavidin-biotin paradox: The influence of history on the strength of single molecular bonds, Biophys.J. 89, 4374–4381.
22. Rico, F., and Moy, V. T. (2007) Energy landscape roughness of the streptavidin-biotin interaction, J Mol Recognit 20, 495–501.
23. Butt, H. J., Cappella, B., and Kappl, M. (2005) Force measurements with the atomic force microscope: Technique, interpretation and applications, Surface Science Reports 59, 1–152.
24. Weisenhorn, A. L., Maivald, P., Butt, H. J., and Hansma, P. K. (1992) Measuring Adhesion, Attraction, And Repulsion Between Surfaces In Liquids With An Atomic-Force Microscope, Phys. Rev. B 45, 11226–11232.
25. Proksch, R., Schaffer, T. E., Cleveland, J. P., Callahan, R. C., and Viani, M. B. (2004) Finite optical spot size and position corrections in thermal spring constant calibration, Nanotechnology 15, 1344–1350.
26. Devasia, S., Eleftheriou, E., and Moheimani, S. O. R. (2007) A survey of control issues in nanopositioning, Ieee Transactions on Control Systems Technology 15, 802–823.
27. Neuert, G., Albrecht, C., Pamir, E., and Gaub, H. E. (2006) Dynamic force spectroscopy of the digoxigenin-antibody complex, Febs Letters 580, 505–509.
28. Odorico, M., Teulon, J. M., Bessou, T., Vidaud, C., Bellanger, L., Chen, S. W. W., Quemeneur, E., Parot, P., and Pellequer, J. L. (2007) Energy landscape of chelated uranyl: Antibody interactions by dynamic force spectroscopy, Biophysical Journal 93, 645–654.
29. Ray, C., Brown, J. R., and Akhremitchev, B. B. (2007) Correction of systematic errors in single-molecule force spectroscopy with polymeric tethers by atomic force microscopy, Journal of Physical Chemistry B 111, 1963–1974.
30. Francius, G., Alsteens, D., Dupres, V., Lebeer, S., De Keersmaecker, S., Vanderleyden, J., Gruber, H. J., and Dufrene, Y. F. (2009) Stretching polysaccharides on live cells using single molecule force spectroscopy, Nature Protocols 4, 939–946.
31. Gittes, F., and Schmidt, C. F. (1998) Thermal noise limitations on micromechanical experiments, European Biophysics Journal with Biophysics Letters 27, 75–81.
32. Noy, A. (2008) Strength in numbers: Probing and understanding intermolecular bonding with chemical force microscopy, Scanning 30, 96–105.
33. Walton, E. B., Lee, S., and Van Vliet, K. J. (2008) Extending Bell’s model: How force transducer stiffness alters measured unbinding forces and kinetics of molecular complexes, Biophys. J. 94, 2621–2630.
34. Tshiprut, Z., Klafter, J., and Urbakh, M. (2008) Single-molecule pulling experiments: when the stiffness of the pulling device matters, Biophys J 95, L42–44.
35. Roters, A., and Johannsmann, D. (1996) Distance-dependent noise measurements in scanning force microscopy, Journal of Physics-Condensed Matter 8, 7561–7577.
36. Alcaraz, J., Buscemi, L., Puig-de-Morales, M., Colchero, J., Baro, A., and Navajas, D. (2002) Correction of microrheological measurements of soft samples with atomic force microscopy for the hydrodynamic drag on the cantilever, Langmuir 18, 716–721.
37. Viani, M. B., Schaffer, T. E., Chand, A., Rief, M., Gaub, H. E., and Hansma, P. K. (1999) Small cantilevers for force spectroscopy of single molecules, Journal of Applied Physics 86, 2258–2262.
38. Junker, J. P., Ziegler, F., and Rief, M. (2009) Ligand-Dependent Equilibrium Fluctuations of Single Calmodulin Molecules, Science 323, 633–637.
39. Berquand, A., Xia, N., Castner, D. G., Clare, B. H., Abbott, N. L., Dupres, V., Adriaensen, Y., and Dufrene, Y. F. (2005) Antigen binding forces of single antilysozyme Fv fragments explored by atomic force microscopy, Langmuir 21, 5517–5523.
40. Brewer, N. J., Janusz, S., Critchley, K., Evans, S. D., and Leggett, G. J. (2005) Photooxidation of self-assembled monolayers by exposure to light of wavelength 254 nm: A static SIMS study, Journal of Physical Chemistry B 109, 11247–11256.
41. Ebner, A., Wildling, L., Kamruzzahan, A. S. M., Rankl, C., Wruss, J., Hahn, C. D., Holzl, M., Zhu, R., Kienberger, F., Blaas, D., Hinterdorfer, P., and Gruber, H. J. (2007) A new, simple method for linking of antibodies to atomic force microscopy tips, Bioconjugate Chemistry 18, 1176–1184.
42. Florin, E. L., Moy, V. T., and Gaub, H. E. (1994) Adhesion forces between individual ligand-receptor pairs, Science 264, 415–417.
43. Kamruzzahan, A. S. M., Ebner, A., Wildling, L., Kienberger, F., Riener, C. K., Hahn, C. D., Pollheimer, P. D., Winklehner, P., Holzl, M., Lackner, B., Schorkl, D. M., Hinterdorfer, P., and Gruber, H. J. (2006) Antibody linking to atomic force microscope tips via disulfide bond formation, Bioconjugate Chemistry 17, 1473–1481.
44. Raab, A., Han, W., Badt, D., Smith-Gill, S. J., Lindsay, S. M., Schindler, H., and Hinterdorfer, P. (1999) Antibody recognition imaging by force microscopy, Nat Biotechnol 17, 901–905.
45. Riener, C. K., Stroh, C. M., Ebner, A., Klampfl, C., Gall, A. A., Romanin, C., Lyubchenko, Y. L., Hinterdorfer, P., and Gruber, H. J. (2003) Simple test system for single molecule recognition force microscopy, Analytica Chimica Acta 479, 59–75.
46. Verbelen, C., Gruber, H. J., and Dufrene, Y. F. (2007) The NTA-HiS(6) bond is strong enough for AFM single-molecular recognition studies, in 1st International AFM BioMed Conference on Life Sciences and Medicine (AFM BioMed 2007), pp 490–494, John Wiley & Sons Ltd, Barcelona, SPAIN.
47. Dupres, V., Menozzi, F. D., Locht, C., Clare, B. H., Abbott, N. L., Cuenot, S., Bompard, C., Raze, D., and Dufrene, Y. F. (2005) Nanoscale mapping and functional analysis of individual adhesins on living bacteria, Nature Methods 2, 515–520.
48. Gad, M., Itoh, A., and Ikai, A. (1997) Mapping cell wall polysaccharides of living microbial cells using atomic force microscopy, Cell Biology International 21, 697–706.
49. Grandbois, M., Dettmann, W., Benoit, M., and Gaub, H. E. (2000) Affinity imaging of red blood cells using an atomic force microscope, Journal of Histochemistry & Cytochemistry 48, 719–724.
50. Favis, B. D., Leonard, B. J., and Prudhomme, R. E. (1983) The interaction of a cationic silane coupling agent with mica, Journal of Applied Polymer Science 28, 1235–1244.
51. Wang, H. D., Bash, R., Yodh, J. G., Hager, G. L., Lohr, D., and Lindsay, S. M. (2002) Glutaraldehyde modified mica: A new surface for atomic force microscopy of chromatin, Biophys. J. 83, 3619–3625.
52. Hutter, J. L., and Bechhoefer, J. (1993) Calibration of atomic-force microscope tips, Rev.Sci.Instr. 64, 1868–1873.
53. Walters, D. A., Cleveland, J. P., Thomson, N. H., Hansma, P. K., Wendman, M. A., Gurley, G., and Elings, V. (1996) Short Cantilevers for Atomic-Force Microscopy, Rev.Sci.Instr. Vol 67, 3583–3590.
54. Viani, M. B., Schaffer, T. E., Chand, A., Rief, M., Gaub, H. E., and Hansma, P. K. (1999) Small cantilevers for force spectroscopy of single molecules, J Appl Phys 86, 2258–2262.
55. McManus, O. B., Blatz, A. L., and Magleby, K. L. (1987) Sampling, Binning, Fitting, And Plotting Durations Of Open-And-Shut Intervals From Single Channels, Biophys. J. 51, A48–A48.
56. Sigworth, F. J., and Sine, S. M. (1987) Data Transformations For Improved Display And Fitting Of Single-Channel Dwell Time Histograms, Biophys. J. 52, 1047–1054.
57. Pierres, A., Touchard, D., Benoliel, A. M., and Bongrand, P. (2002) Dissecting streptavidinbiotin interaction with a Laminar flow chamber, Biophys. J. 82, 3214–3223.
58. Bustamante, C., Marko, J. F., Siggia, E. D., and Smith, S. (1994) Entropic Elasticity of Lambda-Phage DNA, Science 265, 1599-1600.
59. Rief, M., Gautel, M., Oesterhelt, F., Fernandez, J. M., and Gaub, H. E. (1997) Reversible unfolding of individual titin immunoglobulin domains by AFM, Science 276, 1109–1112.
60. Hinterdorfer, P., Baumgartner, W., Gruber, H. J., Schilcher, K., and Schindler, H. (1996) Detection and localization of individual antibody-antigen recognition events by atomic force microscopy, Proceedings of the National Academy of Sciences of the United States of America 93, 3477–3481.
61. Rico, F., and Moy, V. T. (2007) Energy landscape roughness of the streptavidin-biotin interaction, Journal of Molecular Recognition 20, 495–501.
62. Tees, D. F. J., Waugh, R. E., and Hammer, D. A. (2001) A microcantilever device to assess the effect of force on the lifetime of selectin-carbohydrate bonds, Biophys.J. 80, 668–682.
63. Tees, D. F. J., Woodward, J. T., and Hammer, D. A. (2001) Reliability theory for receptor-ligand bond dissociation, J.Chem.Phys. 114, 7483–7496.
64. Alcaraz, J. (2001) Micromechanics of Cultured Human Bronchial Epithelial Cells Measured with Atomic Force Microscopy, Universitat de Barcelona.
65. Janovjak, H. J., Struckmeier, J., and Muller, D. J. (2005) Hydrodynamic effects in fast AFM single-molecule force measurements, Eur Biophys J Biophy 34, 91–96.
66. Kramers, H. A. (1940) Brownian motion in a field of force and the diffusion model of chemical reactions, Physica 7, 304.
67. Hummer, G., and Szabo, A. (2005) Free energy surfaces from single-molecule force spectroscopy, Acc Chem Res 38, 504–513.
68. Friddle, R. W. (2008) Unified model of dynamic forced barrier crossing in single molecules, Physical Review Letters 100.
69. Evans, E. H.K.; Kinoshita, K.; Wong, W.P. (2009) A new approach analysis of single-molecule force measurements, in Handbook of single molecule biophysics (Hinterdorfer, P. v. O., A, Ed.), pp 571–589, Springer, New York.
70. Friddle, R. W., Podsiadlo, P., Artyukhin, A. B., and Noy, A. (2008) Near-equilibrium chemical force microscopy, Journal of Physical Chemistry C 112, 4986–4990.
71. Zhang, Y., Sun, G. Y., Lu, S. Q., Li, N., and Long, M. A. (2008) Low Spring Constant Regulates P-Selectin-PSGL-1 Bond Rupture, Biophys. J. 95, 5439–5448.