The solution to the streptavidin-biotin paradox: The influence of history on the strength of single molecular bonds

Biophysical Journal

Volumn 89, Issue 6, 2005, Pages 4374-4381

  Pincet, Frédéric ^a   Husson, Julien ^a  

^a LABORATOIRE DE PHYSIQUE STATISTIQUE   (France)

Author keywords

[No Author keywords available]

Indexed keywords

BIOTIN; STREPTAVIDIN;

ARTICLE; CHEMICAL BOND; CHEMICAL REACTION; CHEMICAL STRUCTURE; FORCE; MEASUREMENT; REACTION ANALYSIS; STRUCTURE ANALYSIS; THEORY;

EID: 28444492383     PISSN: 00063495     EISSN: 00063495     Source Type: Journal    
DOI: 10.1529/biophysj.105.067769     Document Type: Article

References (30)

1. Florin, E. L., V. T. Moy, and H. E. Gaub. 1994. Adhesion forces between individual ligand-receptor pairs. Science. 264:415-417.
2. Merkel, R., P. Nassoy, A. Leung, K. Ritchie, and E. Evans. 1999. Energy landscapes of receptor-ligand bonds explored with dynamic force spectroscopy. Nature. 397:50-53.
3. Chen, S. Q., and T. A. Springer. 2001. Selectin receptor-ligand bonds: formation limited by shear rate and dissociation governed by the Bell model. Proc. Natl. Acad. Sci. USA. 98:950-955.
4. Hanley, W., O. McCarty, S. Jadhav, Y. Tseng, D. Wirtz, and K. Konstantopoulos. 2003. Single molecule characterization of P-selectin/ligand binding. J. Biol. Chem. 278:10556-10561.
5. 1 integrin-fibronectin interaction. Biophys. J. 84:1252-1262.
6. Pierres, A., D. Touchard, A.-M. Benoliel, and P. Bongrand. 2002. Dissecting streptavidin-biotin interaction with a laminar flow chamber. Biophys. J. 82:3214-3223.
7. Hummer, G., and A. Szabo. 2003. Kinetics from nonequilibrium single-molecule pulling experiments. Biophys. J. 85:5-15.
8. Derenyi, I., D. Bartolo, and A. Ajdari. 2004. Effects of intermediate bound states in dynamic force spectroscopy. Biophys. J. 86:1263-1269.
9. Raible, M., M. Evstigneev, P. Reimann, F. W. Bartels, and R. Ros. 2004. Theoretical analysis of dynamic force spectroscopy experiments on ligand-receptor complexes. J. Biotechnol. 112:13-23.
10. Friedsam, C., A. K. Wehle, F. Kuhner, and H. E. Gaub. 2003. Dynamic single-molecule force spectroscopy: bond rupture analysis with variable spacer length. J. Phys. Condens. Mat. 15:51709-51723.
11. Kuhner, F., L. T. Costa, P. M. Bisch, S. Thalhammer, W. M. Heckl, and H. E. Gaub. 2004. LexA-DNA bond strength by single molecule force spectroscopy. Biophys. J. 87:2683-2690.
12. Yuan, C. B., A. Chen, P. Kolb, and V. T. Moy. 2000. Energy landscape of streptavidin-biotin complexes measured by atomic force microscopy. Biochemistry. 39:10219-10223.
13. Evans, E., K. Ritchie, and R. Merkel. 1995. Sensitive force technique to probe molecular adhesion and structural linkages at biological interfaces. Biophys. J. 68:2580-2587.
14. Green, N. M. 1975. Avidin. Adv. Protein Chem. 29:85-133.
15. Chilkoti, A., and P. S. Stayton. 1995. Molecular origins of the slow streptavidin-biotin dissociation kinetics. J. Am. Chem. Soc. 117:10622-10628.
16. Grubmüller, H., B. Heymann, and P. Tavan. 1996. Ligand binding: molecular mechanics calculation of the streptavidin-biotin rupture force. Science. 271:997-999.
17. Izrailev, S., S. Stepaniants, M. Balsera, Y. Oono, and K. Schulten. 1997. Molecular dynamics study of unbinding of the avidin-biotin complex. Biophys. J. 72:1568-1581.
18. Smith, S. B., Y. J. Cui, and C. Bustamante. 1996. Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules. Science. 271:795-799.
19. Baumann, C. G., S. B. Smith, V. A. Bloomfield, and C. Bustamante. 1997. Ionic effects on the elasticity of single DNA molecules. Proc. Natl. Acad. Sci. USA. 94:6185-6190.
20. Livnah, O., E. A. Bayer, M. Wilchek, and J. L. Sussman. 1993. Three-dimensional structures of avidin and the avidin-biotin complex. Proc. Natl. Acad. Sci. USA. 90:5076-5080.
21. Freitag, S., I. LeTrong, L. Klumb, P. S. Stayton, and R. E. Stenkamp. 1997. Structural studies of the streptavidin binding loop. Protein Sci. 6:1157-1166.
22. Evans, E., and P. M. Williams. 2002. Dynamic force spectroscopy. In Physics of Bio-Molecules and Cells. F. Julicher, P. Ormos, F. David, and H. Flyvbjerg, editors. Springer Verlag, Berlin, Germany. 145-204.
23. Evans, E., and F. Ludwig. 2000. Dynamic strengths of molecular anchoring and material cohesion in fluid biomembranes. J. Phys. Condens. Mat. 12:A315-A320.
24. Bartolo, D., I. Derenyi, and A. Ajdari. 2002. Dynamic response of adhesion complexes: beyond the single-path picture. Phys. Rev. E Stat. Nonlin. Soft Matter Phys. 65:051910.
25. Kramers, H. A. 1940. Brownian motion in a field of force and the diffusion model of chemical reactions. Physica (Utrecht). 7:284-304.
26. Hanggi, P., P. Talkner, and M. Borkovec. 1990. Reaction-rate theory-50 years after Kramers. Rev. Mod. Phys. 62:251-341.
27. Evans, E., and K. Ritchie. 1997. Dynamic strength of molecular adhesion bonds. Biophys. J. 72:1541-1555.
28. Stout, A. L. 2001. Detection and characterization of individual intermolecular bonds using optical tweezers. Biophys. J. 80:2976-2986.
29. Evans, E., A. Leung, V. Heinrich, and C. Zhu. 2004. Mechanical switching and coupling between two dissociation pathways in a P-selectin adhesion bond. Proc. Natl. Acad. Sci. USA. 101:11281-11286.
30. Marshall, B. T., K. K. Sarangapani, J. Lou, R. P. McEver, and C. Zhu. 2005. Force history dependence of receptor-ligand dissociation. Biophys. J. 88:1458-1466.