Allelopathic crop development: Molecular and traditional plant breeding approaches

Plant Breeding Reviews

Volumn 30, Issue , 2008, Pages 231-258

  Bertin, Cecile ^a   Weston, Leslie A ^b   Kaur, Harlene ^c  

^a MCGILL UNIVERSITY   (Canada)

^b Department Of Horticulture ^*  (United States)

^c MAX PLANCK INSTITUTE FOR CHEMICAL ECOLOGY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 80054802074     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1002/9780470380130.ch4     Document Type: Chapter

References (86)

1. Aarsen, L.W. 1983. Ecological combining ability and competitive ability in plants: Toward a general evolutionary theory of coexistence in systems of competition. Am. Nat. 122:707-731.
2. Acciaresi, H.A., H.O. Chidichimo, and S.J. Sarandon. 2001. Traits related to competitive ability of wheat (Triticum aestivum) varieties against italian ryegrass (Lolium multi-florum). Biol. Ag. Hort. 19:275-286.
3. Agarwal, A.K., S.R. Baerson, P.D. Rogers, M.R. Jacob, K.S. Baker, J.D. Cleardy, LA. Walker, D.G. Nagle, and A.M. Clark. 2003. Genome-wide expression profiling of the response to polyene, pyrimidine, azole, and echinocandin antifungal agents in Saccharomyces cervisiae. J. Biol. Chem. 278:34998-35015.
4. Aharoni, A., and O. Vorst. 2001. DNA microarrays for functional plant genomics. Plant Mol. Biol. 48:99-118.
5. Baerson, S.R., A. Sanchez-Moreiras, N. Pedrol-Bonjoch, M. Schulz, I.A. Kagan, A.K. Agarwal, M.J. Reigosa, and S.O. Duke. 2005. Detoxification and transcriptome response in arabidopsis seedlings exposed to the allelochemical benzoxazolin-2(3H)-one. J. Biol. Chem. 180(23):21867-21881.
6. Bais, H.P., S.W. Park, T.L. Weir, R.M. Callaway, and J.M. Vivanco. 2004. How plants communicate using the underground information superhighway. Trends Plants Sci. 9:26-32.
7. Bais, H.P., R. Vepachedu, S. Gilroy, R.M. Callaway, and J.M. Vivanco. 2003. Allelopathy and exotic plant invasion: From molecules and genes to species interactions. Science 301(5638):1377-80.
8. Bertholdsson, N.O. 2005. Early vigour and allelopathy-two useful trats for enhanced barley and wheat competitiveness against weeds. Weed Res. 45:94-102.
9. Bertin, C., and L.A. Weston. 2004. Alternative weed management strategies for turf and landscape settings. In: Inderjit (ed.), Weed ecology and management. Kluwer Academic Publ., Amsterdam, The Netherlands.
10. Bertin, C., X. Yang, and L.A. Weston 2003. The role of root exudates and allelochemicals in the rhyzosphere. Plant & Soil 256:67-83.
11. Borevitz, J.O., Y. Xia, J. Blount, R.A. Dixon, and C. Lamb 2000. Activation tagging identifies a conserved MYB regulator of phenylpropanoid biosynthesis. Plant Cell 12:2383-2393.
12. Canel, C., M.I. Lopes-Cardoso, S. Whitmer, L. van der Fits, G. Pasquali, R. van der Heijden, J.H.C. Hoge, and R. Verpoorte. 1998. Effects of over-expression of strictosidine synthase and tryptophan decarboxylase on alkaloid production by cell cultures of Catharanthus roseus. Planta 205:414-419.
13. Christensen, S. 1995. Wed suppression ability of spring barley varieties. Weed Res. 35:241-247.
14. Clough, S.J., and A.F. Bent 1998. Floral dip: A simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J. 16:735-743.
15. Courtois, B., and M. Olofsdotter. 1998. Incorporating the allelopathy trait in upland rice breeding programs. Workshop on allelopathy in rice, Manila City, Philippines.
16. Czarnota, M.A., R.N. Paul, F.E. Dayan, C.I. Nimbal, and L.A. Weston. 2001. Mode of action, localization of production, chemical nature, and activity of sorgoleone: A potent PSII inhibitor in Sorghum spp. root exudates. Weed Tech. 15:813-825.
17. Czarnota, M.A., R.N. Paul, S.O. Duke, and L.A. Weston. 2003. Anatomy of sorgoleone-secreting root hairs of sorghum spp. Int. J. Plant Sci. 164:861-866.
18. Czarnota, M.A., A.M. Rimando, R.N. Paul, and L. A. Weston 2003. Evaluation of root exudates of seven sorghum (Sorghum spp.) accessions. J. Chem. Ecol. 29:2073-2083.
19. Dayan, F.E. 2006. Factors modulating the levels of the allelochemical sorgoleone in Sorghum bicolor. Planta 224(2):339-346.
20. Dayan, F.E., D. Cook, S.R. Bearson and A.M. Rimando. 2005. Manipulating the lipid resorcinol pathway to enhance allelopathy in rice. 4th World Congress on Allelopathy, Wagga Wagga, Australia, The Regional Institute Limited.
21. Dixon, R.A. 2001. Natural products and plant disease resistance. Nature 411:843-847.
22. Duke, S.O., S.R. Baerson, Z. Pan, I.A. Kagan, A. Sanchez-Moreiras, M.J. Reigosa, N. Pedrol-Bonjoch, and M. Schulz 2005. Genomic approaches to understanding allelochemical modes of action and defenses against allelochemicals. 4th World Congress on Allelo pathy, Wagga Wagga, Australia.
23. Duke, S.O., F.E. Dayan, I.A. Kagan and S.R. Bearson. 2005. New herbicide target sited from natural compounds. Amer. Chem. Soc. Symp. Series 892:132-141.
24. Duke, S.O., B.E. Scheffler, F.E. Dayan, L.A. Weston, and E. Ota. 2001. Strategies for using transgenes to produce allelopathic crops. Weed Tech. 15:826-834.
25. Ebana, K., W. Yan, R.H. Dilday, H. Namai, and K. Okuno 2001. Analysis of QTL associated with the allelopathic effect of rice using water-soluble extracts. Breeding Sci. 51:47-51.
26. Eckes, P., C. van Almsick, and M. Weidler. 2004. Gene expression profiling, a revolu tionary tool in Bayer CropScience herbicide discovery. Pfanzenschutz-Nachrichten Bayer 57:62-77.
27. Eisele, J.A. and U. Kopke. 1997. Choice of cultivars in organic farming: New criteria for winter wheat ideotypes. Pfanfenbauwissenscheften 1:84-89.
28. Facchini, D. and V. Deluca. 1995. Phloem-specific expression of tyrosine dopa decarbox ylase genes and the biosynthesis of quinoline alkaloids in opium poppy. Plant Cell 7:1811-1821.
29. Forkmann, G. and S. Martens. 2001. Metabolic engineering and applications off lavonoids. Curr. Opin. Biotech. 12:155-160.
30. Fowler, M.W. 1983. Plant-cell-cultures: Fact and fantasy. Biochem. Soc. Trans. 11:23-28.
31. Frey, P.M., P. Chomet, E. Glawischnig, C. Stettner, S. Grun, A. Winklmair, W. Eisenreich, A. Bacher, R.B. Meeley, S.P. Briggs, K. Simcox, and A. Gierl. 1997. Analysis of a chemical plant defense mechanism in grasses. Science 277:696-699.
32. Frey, M., K. Huber, W.J. Park, D. Sicker, P. Lindberg, R.B. Meeley, C.R. Simmons, N. Yalpani, and A. Gierl. 2003. A 2-oxoglutarate-dependent dioxygenase is integrated in DIMBOA-biosynthesis. Phytochemistry 62(2):371-376.
33. Gao, S., G. von Schumann, and J. Stockigt. 2002. A newly detected reductase from Rauvolfia closes a gap in the biosynthesis of the antiarrhythmic alkaloid ajmaline. Plant Med. 906-911.
34. Gershenzon, J. 1994. Metabolic costs of terpenoid accumulation in higher plants. J. Chem. Ecol. 20:1281-1328.
35. Gilman, E., R. Goodacre, B. Emmett, A.R. Smith, and D. Gwynn-Jones. 2003. Investigating plant-pant interference by metabolic fingerprinting. Phytochemistry 63:705-710.
36. Goodacre, R., E.M. Timmins, R. Burton, N. Kaderbhai, A.M. Woodward, D.B. Kell, and P.J. Rooney. 1998. Rapid identification of urinary tract infection bacteria using hyper spectral whole-organism fingerprinting and artificial neural networks. Microbiology 144:1157-1170.
37. Goodacre, R., S. Vaidyanathan, G. Bianchi, and D. B. Kell. 2002. Metabolic profiling using direct infusion electrospray ionisation mass spectrometry for the charaterisation of olive oils. The Analyst 11:1457-1462.
38. Goodacre, R., S. Vaidyanathan, W.B. Dunn, G.G. Harrigan, and D.B. Kell. 2004. Metabo-lomics by numbers: Acquiring and understanding global metabolite data. Trends Bio tech. 22:245-252.
39. Gutteridge, S., S.O. Pember, L. Wu, Y. Tao, and M. Walker. 2005. Fungal site of action determination: Integration with high-volume screening and lead progression. Am. Chem. Soc. Symp. Series 892:132-141.
40. Hayashi, H., I. Czaja, H. Lubenow, J. Schell, and R. Walden. 1992. Activation of a plant gene by T-DNA tagging: Auxin-independent growth in vitro. Science 258:1350-1352.
41. Inderjit, and L.A. Weston. 2000. Are laboratory bioassays for allelopathy suitable for prediction of field responses? J. Chem. Ecol. 26:2111-2118.
42. Inderjit, and L.A. Weston. 2003. Root exudates: An overview. In: E.J.W. Visser (ed.), Root ecology. pp. 235-255. Springer Verlag, Heidelberg.
43. Johnson, H.E., R.J. Gilbert, M.K. Winson, R. Goodacre, A.R. Smith, J.J. Rowland, M.A. Hall, and D.B. Kell 2000. Explanatory analysis of the metabolome using genetic programming of simple interpretable rules. Genetic Programmng Evolvable Machine 1:243-258.
44. Jones, M.P., M. Dingkhun, G.H. Aluko, and M. Semon. 1996. New breeding approaches for upland rice improvement-The use of Oryza sativa/O. glaberrima crosses. Upland Rice Research in Partnership. IRRI Discussion Paper Ser. C. Piggin, B. Courtois, and V. Schmidt. Manila, IRRI.
45. Jorgensen, R.A., P.D. Cluster, J. English, Q. Que, and C.A. Napoli 1996. Chalcone synthe tase cosuppression phenotypes in petunia flowers: Comparison of sense vs antisense constructs and single-copy vs complex T-DNA sequences. Plant Mol. Biol. 31:957-973.
46. Jung, W., O. Yu, S.C. Lau, D.P. O'Keefe, J. Odell, G. Fader, and B. McGonigle. 2000. Identi fication and expression of isoflavone synthase, the key enzyme for biosynthesis of isoflavones in 208 legumes. Nature Biotech. 18:208-212.
47. Kim, K.-U., and D.-H. Shin 2003. The importance of allelopathy in breeding new cultivars. Weed management for developing countries. R. Labrada. Rome, FAO Addendum 1.
48. Kirk, G.J.D., E.E. Santos, and M.B. Santos. 1999. Phosphate solubilization by organic anion excretion from rice growing in aerobic soil rates of excretion and decomposition, effects on rhizosphere pH, and effects on phosphate solubility and uptake. New Phytol. 142:185-200.
49. Krysan, P.J., J.C. Young, and M.R. Sussman 1999. T-DNA as an insertional mutagen in Arabidopsis. Plant Cell 11:2283-2290.
50. Lin, W.X. 2000. Allelopathic potential in rice (Oryza sativa L.) and its possible modes of action on barnyardgrass (Echinochloa crus-galli). Allelopathy J. 7:215-224.
51. Lin, W.X. 2003. Analysis on dynamic heterosis for allelopathy in rice under different environment conditions. Agr. Sci. China 2:707-714.
52. Lin, W.X., H.Q. He, L.H. Shen, X.X. Chen, Y. Ke, Y.C. Guo, and H.B. He. 2004. A proteomic approach to analysing rice allelopathy on barnyard grass (Echinochloa crus-galli L.). 4th Int. Crop Sci. Congress, Brisbane, Australia, The Regional Institute Limited.
53. Lindon, J.C., J.K. Nicholson, E. Holmes, and J.R. Everett. 2000. Metabonomics: Metabolic processes studies by NMR spectroscopy of biofluids. Concepts Magn. Reson. 12:289-320.
54. Lovett, J.V. 1990. Chemicals in plant protection: Is there a natural alternative? In: C. Basset, L.J. Whitehouse, and J.A. Zabkiewiez. (eds.), Alternatives to the chemical control of weeds. pp. 57-65. Forest Research Inst., FRI Bul. 155, Rotorua, New Zealand.
55. Lydon, J. 1996. The molecular genetics of bacterial phytotoxins. Plant Growth Reg. 24:111-134.
56. McRoberts, N., R.P. Finch, W. Sinclair, A. Meikle, G. Marshall, G. Squire, and J. McNicol. 1999. Assessing the ecological significance of molecular diversity data in natural plant populations. J. Expt. Bot. 50:1635-1645.
57. Meazza, G., B.E. Scheffler, M.R. Tellez, A.M. Rimando, N.P.D. Nanayakkara, I.A. Khan, E.A. Abourashed, J.G. Romagni, S.O. Duke, and F.E. Dayan 2002. The inhibitory activity of natural products on plant p-hydroxyphenylpyruvate dioxygenase. Phytochemistry 60:281-288.
58. Mitchell-Olds, T., and D. Pedersen. 1998. The molecular basis of quantitative genetic variation in central and secondary metabolism in Arabidopsis. Genetics 149:739-747.
59. Monaco, T. J., S.C. Weller, and F.M. Ashton. 2002. Weed biology and ecology. pp. 13-43. In: Weed science: Principles and practices. Wiley, Hoboken, NJ.
60. Moreno-Gonzalez, J., and J.I. Cubero. 1993. Selection strategies and choice of breeding methods. pp. 296-297. In: M. D. Hayward (ed.), Plant breeding. Chapman and Hall, New York.
61. Olofsdotter, M., and S.B. Andersen 2004. Improvement of allelopathy in crops for weed management: Possibilities, breeding strategies and tools. pp. 317-328. In: Inderjit (ed.), Weed biology and management. Kluwer, Dordrecht, The Netherlands.
62. Ohlrogge, J., and C. Benning 2000. Unraveling plant metabolism by EST analysis. Curr. Opin. Plant Biol. 3:224-228.
63. Olofsdotter, M., L.B. Jensen, and B. Courtois. 2002. Improving crop competitive ability using allelopathy-an example from rice. Plant Breed. 121:1-9.
64. Reigosa, M.J., N. Pedrol-Bonjoch, A. Sanchez-Moreiras, and R.A. Gonzales. 2002. Stress in allelopathy. pp. 12-27. In: M. J. Reigosa and N. Pedrol-Bonjoch (eds.), Allelopathy, from molecules to ecosystems. Science Publishers, Enfield, NH.
65. Richardson, D.R. and G.B. William. 1988. Allelopathic effects of shrubs of the sand pine scrub on pines and grasses of the sandhills. Forest Sci. 34:592-605.
66. Robins, R.J. 1994. Secondary products from cultured cells and organs-Molecular and cellular approaches. pp. 169-198. In: R.A. Dixon and R.A. Gonzales (eds.), Plant cell culture: A practical approach. IRL Press, Oxford, UK.
67. Sandermann, H.J. 1999. Plant metabolism of organic xenobiotics. Status and prospects of the "green liver" concept. pp. 321-328. In: A. Altman et al. (eds.), Plant biotechnology and in vitro biology in the 21st century. Kluwer, Dordrecht, The Netherlands.
68. Schulz, M., and I. Wieland. 1999. Variation in metabolism of BOA among species in variousfield communities-biochemical evidence for co-evolutionary processes in plant communities? Chemoecology 9:133-141.
69. Shen, L., B. Courtois, B.K. McNally, Robin and Z. Li. 2001. Evaluation of near-isogenic lines introgressed with, QTLs for root depth through marker-aided selection. Theor. Appl. Genet. 103:75-83.
70. Shin, D.H., K.U. Kim, D.S. Sohn, S.U. Kang, H.Y. Kim, I.J. Lee, and M.Y. Kim. 2000. Regulation of gene expression related to allelopathy. Int. workshop in rice allelopathy, Kyungpook National Univ. Inst. Agr. Sci. Tech., Taegu, Korea.
71. Sicker, D., M. Frey, M. Schulz, and A. Gierl. 2000. Role of natural benzoxazinones in the survival strategies of plants. Int. Rev. Cytol 198:319-346.
72. Siemens, D.H., S.H. Garner, T. Mitchell-Olds, and R.M. Callaway. 2002. Cost of defense in the context of plant competition: Brassica rapa may grow and defend. Ecology 83:505-517.
73. Thomas, M.A., and R. Klaper 2004. Genomics for the ecological toolbox. Trends Ecol. Evol. 19:440-445.
74. Vaidyanathan, S., J.J. Rowland, D.B. Kell, and R. Goodacre 2001. Discrimination of aerobic endospore-forming bacteria via electrospray-ionization mass spectrometry of whole cell suspensions. Anal. Chem. 73:4134-4144.
75. Van der Fits, L., and J. Memelink. 2000. ORCA3, a jasmonate-responsive transcriptional regulator of plant primary and secondary metabolism. Science 289:295-297.
76. Wagner, G.J., E. Wang, and R.W. Shepherd 2004. New approaches for studying and exploit ing an old protuberance, the plant trichome. Ann. Bot. 93:3-11.
77. Weckwerth, W. 2003. Metabolomics in systems biology. Annu. Rev. Plant Biol. 54:669-689.
78. Weigel, D., J.H. Ahn, and A. Blasquez 2000. Activation tagging in Arabidopsis. Plant Physiol. 122:1003-1014.
79. Weston, L.A. 2005. History and future perspectives of allelopathy for weed management. HortTechnology 15(2):529-534.
80. Weston, L.A., J.N. Barney, and A. DiTommaso. 2005. A review of the biology, ecology and potential management of three important invasive perennials in New York State: Apanese knotweed (Polygonum cuspidatum), mugwort (Artemisia vulgaris) and pale swallowwort (Vincetoxicum rossicum). Plant & Soil 277:53-79.
81. Weston, L.A., and S.O. Duke. 2003. Weed and crop allelopathy. Crit. Rev. Plant Sci. 22(3&4):367-389.
82. Wink, M. 2003. Evolution of secondary metabolites from an ecological and molecular phylogenetic perspective. Phytochemistry 64(1):3-19.
83. Wu, H., J. Pratley, W. Ma, and T. Haig. 2003. Quantitative trait loci and molecular markers associated with wheat allelopathy. Theor. App. Genetics 107:1477-1481.
84. Yang, X., T.G. Owens, B.E. Scheffler, and L.A. Weston. 2004. Manipulation of root hair development and sorgoleone production in sorghum seedlings. J. Chem. Ecol. 30:199-213.
85. Yang, X., B.E. Scheffler, and L.A. Weston 2004. SOR1, a gene associated with bioherbicide production in sorghum root hairs. J. Expt. Bot. 55:2251-2259.
86. Zhou, S., C. Kong, H. Li, D. Lu, and F. Hu. 2005. Relationships between allelopathic traits and agronomic characters of allelopathic rice varieties. Ying Yong Sheng Tai Xue Bao 16(4): 737-739.