Actinomadura apis sp. nov., isolated from a honey bee (Apis mellifera) hive, and the reclassification of Actinomadura cremea subsp. rifamycini Gauze et al. 1987 as Actinomadura rifamycini (Gauze et al.1987) sp. nov., comb. nov

International Journal of Systematic and Evolutionary Microbiology

Volumn 61, Issue 9, 2011, Pages 2271-2277

  Promnuan, Yaowanoot ^a   Kudo, Takuji ^b   Ohkuma, Moriya ^b   Chantawannakul, Panuwan ^a  

^a CHIANG MAI UNIVERSITY   (Thailand)

^b RIKEN BIORESOURCE CENTER   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; CARDIOLIPIN; DIAMINOPIMELIC ACID; FATTY ACID; FUCOSE; GALACTOSE; GLUCOSE; HEXAHYDROGENATED MENAQUINONE; ISOPRENE; MADUROSE; MANNOSE; MANNOSIDE; MESO 2,6 DIAMINOPIMELIC ACID; PHOSPHATIDYLINOSITOL; QUINONE DERIVATIVE; RIBOSE; RNA 16S; SUGAR; UNCLASSIFIED DRUG;

ACTINOMADURA; ACTINOMADURA APIS; ACTINOMADURA CREMEA; ACTINOMADURA RIFAMYCINI; ARTICLE; BACTERIAL ARTHROSPORE; BACTERIAL CELL WALL; BACTERIAL PHENOMENA AND FUNCTIONS; BACTERIAL STRAIN; BACTERIUM ISOLATE; CHEMOTAXONOMY; CLASSIFICATION; GENE SEQUENCE; GENOTYPE; HONEYBEE; MYCELIUM; NEW COMBINATION (TAXONOMY); NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; RNA GENE; THAILAND;

ACTINOMYCETALES; AEROBIOSIS; ANIMALS; BACTERIAL TYPING TECHNIQUES; BEES; CARBOHYDRATES; CELL WALL; CLUSTER ANALYSIS; DIAMINOPIMELIC ACID; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHOSPHOLIPIDS; PHYLOGENY; QUINONES; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; THAILAND; URTICARIA;

ACTINOMADURA; ACTINOMADURA CREMEA SUBSP. CREMEA; ACTINOMADURA CREMEA SUBSP. RIFAMYCINI; APIS; APIS MELLIFERA; MYCELIUM (GENUS);

EID: 80054716872     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.026633-0     Document Type: Article

References (40)

1. Ara, I., Matsumoto, A., Bakir, M. A., Kudo, T., Omura, S. & Takahashi, Y. (2008). Actinomadura bangladeshensis sp. nov. and Actinomadura chokoriensis sp. nov. Int J Syst Evol Microbiol 58, 1653-1659
2. Asano, K. & Kawamoto, I. (1986). Catellatospora, a new genus of the Actinomycetales. Int J Syst Bacteriol 36, 512-517
3. Collins, M. D., Pirouz, T., Goodfellow, M. & Minnikin, D. E. (1977). Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100, 221-230
4. Collins, M. D., Faulkner, M. & Keddie, R. M. (1984). Menaquinone composition of some spore forming actinomycetes. Syst Appl Microbiol 5, 20-29
5. Cook, A. E., Roes, M. & Meyers, P. R. (2005). Actinomadura napierensis sp. nov., isolated from soil in South Africa. Int J Syst Evol Microbiol 55, 703-706
6. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229
7. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791
8. Gauze, G. F., Preobrazhenskaia, T. P., Lavrova, N. V., Ukholina, R. S. & Kochetkova, N. V. (1975). [Actinomadura cremea var. rifamycini, a producer of rifamycin O]. Antibiotiki 20, 963-966 (in Russian).
9. Gauze, G. F., Terekhova, L. P., Galatenko, O. A., Preobrazhenskaya, T. P., Borisova, V. N. & Federova, G. B. (1987). Actinomadura cremea subsp. rifamicini subsp. nov. In Validation of the publication of new names and new combinations previously effectively published outside the IJSB: List no. 23. Int J Syst Bacteriol 37, 179-180
10. Howey, R. T., Lock, C. M. & Moore, L. V. H. (1990). Subspecies names automatically created by Rule 46. Int J Syst Bacteriol 40, 317-319
11. Itoh, T., Kudo, T., Parenti, F. & Seino, A. (1989). Amended description of the genus Kineosporia, based on chemotaxonomic and morphological studies. Int J Syst Bacteriol 39, 168-173
12. Jacobson, E., Grauville, W. C. & Fogs, C. E. (1958). Color Harmony Manual, 4th edn. Chicago: Container Corporation of America.
13. Kroppenstedt, R. M. (1985). Fatty acid and menaquinone analysis of actinomycetes and related organisms. In Chemical Methods in Bacterial Systematics, pp. 173-199.Edited by M. Goodfellow & D. E. Minnikin. London: Academic Press, Ltd.
14. Kroppenstedt, R. M. & Goodfellow, M. (2006). The family Thermomonosporaceae: Actinocorallia, Actinomadura, Spirillospora and Thermomonospora. In The Prokaryotes, 3rd edn, vol. 3, pp. 682-724. Edited by M. Dworkin, S. Falkow, E. Rosenberg, K.-H. Schleifer & E. Stackebrandt. New York, NY: Springer.
15. Kroppenstedt, R. M., Stackebrandt, E. & Goodfellow, M. (1990). Taxonomic revision of the actinomycete genera Actinomadura and Microtetraspora. Syst Appl Microbiol 13, 148-160
16. Küster, E. & Williams, S. T. (1964). Selection of media for isolation of streptomycetes. Nature 202, 928-929
17. Lechevalier, H. A. & Lechevalier, M. P. (1968). A critical evaluation of the genera of aerobic actinomycetes. In The Actinomycetales, pp. 393-405. Edited by H. Prauser. Jena: VEB Gustav Fischer Verlag.
18. Lechevalier, M. P. & Lechevalier, H. A. (1970). Chemical composition as a criterion in the classification of aerobic actinomycetes. Int J Syst Bacteriol 20, 435-443
19. Lechevalier, M. P., Stern, A. E. & Lechevalier, H. A. (1981). Phospholipids in the taxonomy of actinomycetes. Zentralbl Bakteriol Microbiol Hyg Abt 1 (Suppl 11), 111-116
20. Mikami, H. & Ishida, Y. (1983). Post-column fluorometric detection of reducing sugar in high-performance liquid chromatography using arginine. Bunseki Kagaku 32, E207-E210.
21. Minnikin, D. E., O'Donnell, A. G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, A. & Parlett, J. H. (1984). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2, 233-241
22. Nakajima, Y., Kitpreechavanich, V., Suzuki, K. & Kudo, T. (1999). Microbispora corallina sp. nov., a new species of the genus Microbispora isolated from Thai soil. Int J Syst Bacteriol 49, 1761-1767.
23. Preobrazhenskaya, T. P., Lavrova, N. V., Ukholina, R. S. & Nechaeva, N. P. (1975). [Isolation of new species of the genus Actinomadura on selective media with streptomycin and bruneomycin]. Antibiotiki 20, 404-409 (in Russian).
24. Promnuan, Y., Kudo, T. & Chantawannakul, P. (2009). Actinomycetes isolated from beehives in Thailand. World J Microbiol Biotechnol 25, 1685-1689
25. Qin, S., Zhao, G. Z., Li, J., Zhu, W. Y., Xu, L. H. & Li, W. J. (2009). Actinomadura flavalba sp. nov., an endophytic actinomycete isolated from leaves of Maytenus austroyunnanensis. Int J Syst Evol Microbiol 59, 2453-2457
26. Reader, U. & Broda, P. (1985). Rapid preparation of DNA from filamentous fungi. Lett Appl Microbiol 1, 17-20
27. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
28. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
29. Shirling, E. B. & Gottlieb, D. (1966). Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16, 313-340
30. Stackebrandt, E. & Ebers, J. (2006). Taxonomic parameters revisited: tarnished gold standards. Microbiol Today 33, 152-155
31. Stackebrandt, E., Rainey, F. A. & Ward-Rainey, N. L. (1997). Proposal for a new hierarchic classification system, Actinobacteria classis nov. Int J Syst Bacteriol 47, 479-491
32. Staneck, J. L. & Roberts, G. D. (1974). Simplified approach to identification of aerobic actinomycetes by thin-layer chromatography. Appl Microbiol 28, 226-231
33. Takahashi, K. & Nei, M. (2000). Efficiencies of fast algorithms of phylogenetic inference under the criteria of maximum parsimony, minimum evolution, and maximum likelihood when a large number of sequences are used. Mol Biol Evol 17, 1251-1258
34. Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125-128
35. Tamaoka, J., Katayama-Fujimura, Y. & Kuraishi, H. (1983). Analysis of bacterial menaquinone mixtures by high-performance liquid chromatography. J Appl Microbiol 54, 31-36
36. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599
37. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882
38. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464
39. Yassin, A. F., Spröer, C., Siering, C. & Klenk, H.-P. (2010). Actinomadura sputi sp. nov., isolated from the sputum of a patient with pulmonary infection. Int J Syst Evol Microbiol 60, 149-153
40. Zhi, X. Y., Li, W. J. & Stackebrandt, E. (2009). An update of the structure and 16S rRNA gene sequence-based definition of higher ranks of the class Actinobacteria, with the proposal of two new suborders and four new families and emended descriptions of the existing higher taxa. Int J Syst Evol Microbiol 59, 589-608.