Actinomadura flavalba sp. nov., an endophytic actinomycete isolated from leaves of Maytenus austroyunnanensis

International Journal of Systematic and Evolutionary Microbiology

Volumn 59, Issue 10, 2009, Pages 2453-2457

  Qin, Sheng ^a   Zhao, Guo Zhen ^a   Li, Jie ^a   Zhu, Wen Yong ^a   Xu, Li Hua ^a   Li, Wen Jun ^a  

^a BEIJING UNIVERSITY OF POSTS AND TELECOMMUNICATIONS   (China)

Author keywords

[No Author keywords available]

Indexed keywords

RIBOSOME RNA; RNA 16S;

ACTINOMADURA; ACTINOMADURA ATRAMENTARIA; ACTINOMADURA FLAVALBA; ARTICLE; BACTERIAL SPORE; BACTERIAL STRAIN; BACTERIUM ISOLATE; CHEMOTAXONOMY; CHINA; DNA DNA HYBRIDIZATION; MAYTENUS; MAYTENUS AUSTROYUNNANENSIS; MYCELIUM; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PLANT LEAF; PRIORITY JOURNAL; RNA SEQUENCE; SEQUENCE HOMOLOGY;

ACTINOMYCETALES; CHINA; DNA, BACTERIAL; DNA, RIBOSOMAL; MAYTENUS; MOLECULAR SEQUENCE DATA; PLANT LEAVES; RNA, RIBOSOMAL, 16S; SPORES, BACTERIAL;

ACTINOMADURA; ACTINOMADURA ATRAMENTARIA; MAYTENUS; MYCELIUM (GENUS);

EID: 70350719167     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.010652-0     Document Type: Article

References (31)

1. Chen, H.-H., Qin, S., Li, J., Zhang, Y.-Q., Xu, L.-H., Jiang, C.-L., Kim, C.-J. & Li, W.-J. (2009). Pseudonocardia endophytica sp. nov., isolated from the pharmaceutical plant Lobelia clavata. Int J Syst Evol Microbiol 59, 559-563.
2. Collins, M. D. & Jones, D. (1980). Lipids in the classification and identification of coryneform bacteria containing peptidoglycans based on 2,4-diaminobutyric acid. J Appl Bacteriol 48, 459-470.
3. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
4. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
5. Goodfellow, M. (1989). Maduromycetes. In Bergey's Manual of Systematic Bacteriology, vol. 4, pp. 2509-2551. Edited by S. T. Williams, M. E. Sharpe & J. G. Holt. Baltimore: Williams & Wilkins.
6. Gordon, R. E., Barnett, D. A., Handerhan, J. E. & Pang, C. H.-N. (1974). Nocardia coeliaca, Nocardia autotrophica, and the nocardin strain. Int J Syst Bacteriol 24, 54-63.
7. Groth, I., Schumann, P., Rainey, F. A., Martin, K., Schuetze, B. & Augsten, K. (1997). Demetria terragena gen. nov., sp. nov., a new genus of actinomycetes isolated from compost soil. Int J Syst Bacteriol 47, 1129-1133.
8. Hasegawa, T., Takizawa, M. & Tanida, S. (1983). A rapid analysis for chemical grouping of aerobic actinomycetes. J Gen Appl Microbiol 29, 319-322.
9. He, L., Li, W., Huang, Y., Wang, L., Liu, Z., Lanoot, B., Vancanneyt, M. & Swings, J. (2005). Streptomyces jietaisiensis sp. nov., isolated from soil in northern China. Int J Syst Evol Microbiol 55, 1939-1944.
10. Kämpfer, P. & Kroppenstedt, R. M. (1996). Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa. Can J Microbiol 42, 989-1005.
11. Kelly, K. L. (1964). Inter-Society Color Council - National Bureau of Standards Color Name Charts Illustrated with Centroid Colors. Washington, DC: US Government Printing Office.
12. Kluge, A. G. & Farris, J. S. (1969). Quantitative phyletics and the evolution of anurans. Syst Zool 18, 1-32.
13. Kumar, S., Tamura, K. & Nei, M. (2004). MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5, 150-163.
14. Lechevalier, M. P. & Lechevalier, H. A. (1970). Chemical composition as a criterion in the classification of aerobic actinomycetes. Int J Syst Bacteriol 20, 435-443.
15. Li, W.-J., Xu, P., Schumann, P., Zhang, Y.-Q., Pukall, R., Xu, L.-H., Stackebrandt, E. & Jiang, C.-L. (2007). Georgenia ruanii sp. nov., a novel actinobacterium isolated from forest soil in Yunnan (China), and emended description of the genus Georgenia. Int J Syst Evol Microbiol 57, 1424-1428.
16. Li, J., Zhao, G.-Z., Zhang, Y.-Q., Klenk, H.-P., Pukall, R., Qin, S., Xu, L.-H. & Li, W.-J. (2008). Dietzia schimae sp. nov. and Dietzia cercidiphylli sp. nov., from surface-sterilized plant tissues. Int J Syst Evol Microbiol 58, 2549-2554.
17. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
18. Minnikin, D. E., Collins, M. D. & Goodfellow, M. (1979). Fatty acid and polar lipid composition in the classification of Cellulomonas, Oerskovia and related taxa. J Appl Bacteriol 47, 87-95.
19. Miyadoh, S., Amano, S., Tohyama, H. & Shomura, T. (1987). Actinomadura atramentaria, a new species of the Actinomycetales. Int J Syst Bacteriol 37, 342-346.
20. Otoguro, M., Hayakawa, M., Yamazaki, T. & Iimura, Y. (2001). An integrated method for the enrichment and selective isolation of Actinokineospora spp. in soil and plant litter. J Appl Microbiol 91, 118-130.
21. Qin, S., Wang, H.-B., Chen, H.-H., Zhang, Y.-Q., Jiang, C.-L., Xu, L.-H. & Li, W.-J. (2008a). Glycomyces endophyticus sp. nov., an endophytic actinomycete isolated from the root of Carex baccans Nees. Int J Syst Evol Microbiol 58, 2525-2528.
22. Qin, S., Li, J., Zhao, G.-Z., Chen, H.-H., Xu, L.-H. & Li, W.-J. (2008b). Saccharopolyspora endophytica sp. nov., an endophytic actinomycete isolated from the root of Maytenus austroyunnanensis. Syst Appl Microbiol 31, 352-357.
23. Qin, S., Chen, H. H., Klenk, H. P., Zhao, G. Z., Li, J., Xu, L. H. & Li, W. J. (2009). Glycomyces scopariae sp. nov. and Glycomyces mayteni sp. nov., isolated from two medicinal plants in China. Int J Syst Evol Microbiol 59, 1023-1027.
24. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
25. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
26. Shirling, E. B. & Gottlieb, D. (1966). Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16, 313-340.
27. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
28. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
29. Waksman, S. A. (1967). The Actinomycetes. A Summary of Current Knowledge. New York: Ronald Press.
30. Wink, J., Kroppenstedt, R. M., Seibert, G. & Stackebrandt, E. (2003). Actinomadura namibiensis sp. nov. Int J Syst Evol Microbiol 53, 721-724.
31. Zhang, Z., Kudo, T., Nakajima, Y. & Wang, Y. (2001). Clarification of the relationship between the members of the family Thermomonosporaceae on the basis of 16S rDNA, 16S-23S rRNA internal transcribed spacer and 23S rDNA sequences and chemotaxonomic analyses. Int J Syst Evol Microbiol 51, 373-383.