Actinomadura napierensis sp. nov., isolated from soil in South Africa

International Journal of Systematic and Evolutionary Microbiology

Volumn 55, Issue 2, 2005, Pages 703-706

  Cook, Andrew E ^a   le Roes, Marilize ^a   Meyers, Paul R ^a  

^a UNIVERSITY OF CAPE TOWN   (South Africa)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL RNA; RNA 16S;

ACTINOMADURA; ACTINOMADURA NAPIERENSIS; ANTIBACTERIAL ACTIVITY; ARTICLE; BACTERIAL GENE; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; CHEMOTAXONOMY; ENTEROCOCCUS FAECIUM; ESCHERICHIA COLI; GENE SEQUENCE; GENETIC ANALYSIS; MICROBIAL ACTIVITY; MICROBIAL MORPHOLOGY; MYCOBACTERIUM AURUM; MYCOBACTERIUM TUBERCULOSIS; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; RNA ANALYSIS; RNA SEQUENCE; SEQUENCE ANALYSIS; STRAIN DIFFERENCE;

ACTINOMYCETALES; ANTI-BACTERIAL AGENTS; BACTERIA; DNA, BACTERIAL; DNA, RIBOSOMAL; GENES, RRNA; MICROBIAL SENSITIVITY TESTS; MOLECULAR SEQUENCE DATA; PHENOTYPE; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; SOUTH AFRICA;

ACTINOMADURA; ACTINOMADURA NAPIERENSIS; ENTEROCOCCUS FAECIUM; ESCHERICHIA COLI; MYCOBACTERIUM AURUM; MYCOBACTERIUM TUBERCULOSIS; UNCULTURED ACTINOMYCETE;

EID: 16844362042     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.63359-0     Document Type: Article

References (24)

1. Atlas, R. M. (1993). Handbook of Microbiological Media. Edited by L. C. Parks. Boca Raton, FL: CRC Press.
2. Betina, V. (1973). Bioautography in paper and thin-layer chromatography and its scope in the antibiotic field. J Chromatogr 78, 41-51.
3. Chou, S., Chedore, P. & Kasatiya, S. (1998). Use of gas chromatographic fatty acid and mycolic acid cleavage product determination to differentiate among Mycobacterium genavense, Mycobacterium fortuitum, Mycobacterium simiae, and Mycobacterium tuberculosis. J Clin Microbiol 36, 577-579.
4. Cook, A. E. & Meyers, P. R. (2003). Rapid identification of filamentous actinomycetes to the genus level using genus-specific 16S rRNA gene restriction fragment patterns. Int J Syst Evol Microbiol 53, 1907-1915.
5. Goodfellow, M. (1989). Maduromycetes. In Bergey's Manual of Systematic Bacteriology, vol. 4, pp. 2509-2510. Edited by S. T. Williams, M. E. Sharpe & J. G. Holt. Baltimore: Williams & Wilkins.
6. Hacène, H. & Lefebvre, G. (1995). AH17, a new non-polyenic antifungal antibiotic produced by a strain of Spirillospora. Microbios 83, 199-205.
7. Hasegawa, T., Takizawa, M. & Tanida, S. (1983). A rapid analysis for chemical grouping of aerobic actinomycetes. J Gen Appl Microbiol 29, 319-322.
8. Keswani, J. & Whitman, W. B. (2001). Relationship of 16S rRNA sequence similarity to DNA hybridization in prokaryotes. Int J Syst Evol Microbiol 51, 667-678.
9. Komagata, K. & Suzuki, K. L. (1987). Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 19, 161-207.
10. Labeda, D. P., Testa, R. T., Lechevalier, M. P. & Lechevalier, H. A. (1984). Saccharothrix: a new genus of the Actinomycetales related to Nocardiopsis. Int J Syst Bacteriol 34, 426-431.
11. Lechevalier, M. P., de Bièvre, C. & Lechevalier, H. A. (1977). Chemotaxonomy of aerobic actinomycetes: phospholipid composition. Biochem Ecol Syst 5, 249-260.
12. Mandel, M. & Marmur, J. (1968). Use of ultraviolet absorbance-temperature profile for determining the guanine plus cytosine content of DNA. Methods Enzymol 7, 195-206.
13. Minnikin, D. E., Alshamaony, L. & Goodfellow, M (1975). Differentiation of Mycobacterium, Nocardia, and related taxa by thin-layer chromatographic analysis of whole-organism methanolysates. J Gen Microbiol 88, 200-204.
14. Quintana, E. T., Trujillo, M. E. & Goodfellow, M. (2003). Actinomadura mexicana sp. nov. and Actinomadura meyerii sp. nov., two novel soil sporoactinomycetes. Syst Appl Microbiol 26, 511-517.
15. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
16. Sambrook, J., Fritsch, E. F. & Maniatis, T. (1989). Bacterial media, antibiotics and bacterial strains. In Molecular Cloning: a laboratory Manual, 2nd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
17. Shirling, E. B. & Gottlieb, D. (1966). Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16, 313-340.
18. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
19. Stackebrandt, E., Rainey, F. A. & Ward-Rainey, N. L. (1997). Proposal for a new hierarchic classification system, Actinobacteria classis nov. Int J Syst Bacteriol 47, 479-491.
20. Trujillo, M. E. & Goodfellow, M. (1997). Polyphasic taxonomic study of clinically significant actinomadurae including the description of Actinomadura latina sp. nov. Zentbl Bakteriol 285, 212-233.
21. Weyer, K., Groenewald, P., Zwarenstein, M. & Lombard, C.J. (1995). Tuberculosis drug resistance in the Western Cape. S Afr Med J 86, 499-504.
22. WHO (2000). Tuberculosis. Fact sheet no. 104. Geneva: World Health Organization. http://www.who.int/mediacentre/factsheets/fs104/en/
23. WHO (2004). Discussion. In Global Tuberculosis Control, WHO Report 2004, pp. 44-47. Geneva: World Health Organization. http://www.who.int/tb/publications/global_report/2004/en/discussion.pdf
24. Zhang, Z., Wang, Y. & Ruan, J. (1998). Reclassification of Thermomonospora and Microtetraspora. Int J Syst Bacteriol 48, 411-422.