Identification of environmental reservoirs of nontyphoidal salmonellosis: Aptamer-assisted bioconcentration and subsequent detection of Salmonella typhimurium by quantitative polymerase chain reaction

Environmental Science and Technology

Volumn 45, Issue 20, 2011, Pages 8996-9002

  Jyoti, Anurag ^a   Vajpayee, Poornima ^a   Singh, Gulshan ^a   Patel, Chandra Bali ^a   Gupta, Kailash Chand ^a   Shanker, Rishi ^a  

^a CSIR INDIAN INSTITUTE OF TOXICOLOGY RESEARCH   (India)

Author keywords

[No Author keywords available]

Indexed keywords

APTAMERS; BACTERIAL CELLS; BIOCONCENTRATION; COLONY FORMING UNITS; ENVIRONMENTAL RESERVOIRS; FLUORESCENT PROBES; GANGES RIVER; MOLECULAR BEACON; POTENTIAL RESERVOIR; QUANTITATIVE POLYMERASE CHAIN REACTION; SALMONELLA ENTERICA; SALMONELLA TYPHIMURIUM; SEROVAR; SOUTH ASIA;

ANOXIC SEDIMENTS; CELL CULTURE; DNA; GENES; POLYMERASE CHAIN REACTION; POLYMERIZATION; RESERVOIRS (WATER); RIVERS; SEDIMENTOLOGY;

SALMONELLA;

APTAMER;

BACTERIUM; MICROBIAL COMMUNITY; MITOCHONDRIAL DNA; POLYMERASE CHAIN REACTION; RIVER WATER;

ARTICLE; BACTERIUM DETECTION; BIOACCUMULATION; ENVIRONMENTAL FACTOR; NONHUMAN; POLYMERASE CHAIN REACTION; QUANTITATIVE ASSAY; RESERVOIR; SALMONELLA TYPHIMURIUM; SALMONELLOSIS;

APTAMERS, NUCLEOTIDE; HUMANS; POLYMERASE CHAIN REACTION; SALMONELLA INFECTIONS; SALMONELLA TYPHIMURIUM;

GANGES RIVER;

BACTERIA (MICROORGANISMS); SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR TYPHIMURIUM; SALMONELLA TYPHIMURIUM;

EID: 80054699063     PISSN: 0013936X     EISSN: 15205851     Source Type: Journal    
DOI: 10.1021/es2018994     Document Type: Article

References (31)

1. Vezzulli, L.; Pruzzo, C.; Huq, A.; Colwell, R. R. Environmental reservoirs of Vibrio cholerae and their role in cholera Environ. Microbiol. Rep. 2010, 2, 23-33
2. Moganedi, K. L. M.; Goyvaerts, E. M. A.; Venter, S. N.; Sibara, M. M. Optimisation of the PCR- invA primers for the detection of Salmonella in drinking and surface waters following a pre-cultivation step Water SA 2007, 33, 195-202
3. Ram, S.; Vajpayee, P.; Dwivedi, P. D.; Shanker, R. Culture-free detection and enumeration of STEC in water Ecotoxicol. Environ. Saf. 2011, 74, 551-557
4. Voetsch, A. C.; Gilder, T. J. V.; Angulo, F. J.; Farley, M. M.; Shallow, S.; Marcus, R. Food Net estimate of the burden of illness caused by non-typhoidal Salmonella infections in the United States Clin. Infect. Dis. 2004, 38, 27-34
5. Martinez-Urtaza, J.; Liebana, E.; Garcia-Migura, L.; Perez-Piñeiro, P.; Saco, M. Characterization of Salmonella enterica serovar Typhimurium from marine environments in coastal waters of Galicia (Spain) Appl. Environ. Microbiol. 2004, 70, 4030-4034
6. Foley, S. L.; White, D. G.; McDermott, P. F.; Walker, R. D.; Rhodes, B.; Fedorka-Cray, P, J.; Simjee, S.; Zhao, S. Comparison of subtyping methods for differentiating Salmonella enterica serovar Typhimurium Isolates obtained from food animal sources J. Clin. Microbiol. 2006, 44, 3569-3577
7. Jyoti, A.; Ram, S.; Vajpayee, P.; Singh, G.; Dwivedi, P. D.; Jain, S. K.; Shanker, R. Contamination of surface and potable water in South Asia by Salmonellae: Culture-independent quantification with molecular beacon real-time PCR Sci. Total Environ. 2010, 408, 1256-1263
8. Humphrey, T. Salmonella, stress responses and food safety Nat. Rev. Microbiol. 2004, 2, 504-509
9. Chimalizeni, Y.; The Epidemiology and Management of Non Typhoidal Salmonella Infections. In Hot topics in infection and immunity in children IV; Advances in Experimental Medicine and Biology, Vol. 659; Finn, A.; Curtis, N.; Pollard, A. J., Eds.; Springer: New York, 2010; pp 33-60.
10. Duffy, E. A.; Lucia, L. M.; Kells, J. M.; Castillo, A.; Pillai, S. D.; Acuff, G. R. Concentration of Escherichia coli and genetic diversity and antibiotic resistance profiling of Salmonella isolated from irrigation water, packing shed equipment, and fresh produce in Texas J. Food Prot. 2005, 68, 70-79
11. Josefsen, M. H.; Krause, M.; Hansen, F.; Hoorfar, J. Optimization of a 12-h TaqMan PCR based method for detection of Salmonella bacteria in meat Appl. Environ. Microbiol. 2007, 73, 3040-3048
12. Malorny, B.; Löfström, C.; Wagner, M.; Krämer, N.; Hoorfar, J. Enumeration of Salmonella bacteria in food and feed samples by real-time PCR for quantitative microbial risk assessment Appl. Environ. Microbiol. 2008, 74, 1299-1304
13. Malorny, B.; Bunge, C.; Helmuth, R. A real-time PCR for the detection of Salmonella Enteritidis in poultry meat and consumption eggs J. Microbiol. Methods 2007, 70, 245-251
14. Hadjinicolaou, A. V.; Demetriou, V. L.; Emmanuel, M. A.; Kakoyiannis, C. K.; Kostrikis, L. G. Molecular beacon-based real-time PCR detection of primary isolates of Salmonella Typhimurium and Salmonella Enteritidis in environmental and clinical samples BMC Microbiol. 2009, 9, 97
15. Hensel, M.; Hinsley, A. P.; Nikolaus, T.; Sawers, G.; Berks, B. C. The genetic basis of tetrathionate respiration in Salmonella typhimurium Mol. Microbiol. 1999, 32, 275-287
16. Malorny, B.; Paccassoni, E.; Fach, P.; Bunge, C.; Martin, A.; Helmuth, R. Diagnostic real-time PCR for detection of Salmonella in food Appl. Environ. Microbiol. 2004, 70, 7046-7052
17. Vikesland, P. J.; Wigginton, K. R. Nanomaterial enabled biosensors for pathogen monitoring-a review Environ. Sci. Technol. 2010, 44, 3656-3669
18. Mairal, T.; Özalp, V. C.; Sánchez, P. L.; Mir, M.; Katakis, I.; O'Sullivan, C. K. Aptamers: molecular tools for analytical applications Anal. Bioanal. Chem. 2008, 390, 989-1007
19. Joshi, R.; Janagama, H.; Dwivedi, H. P.; Senthil Kumar, T. M. A.; Jaykus, L.-A.; Schefers, J.; Sreevatsan, S. Selection, characterization, and application of DNA aptamers for the capture and detection of Salmonella enterica serovars Mol. Cell. Probes 2009, 23, 20-28
20. Ram, S.; Vajpayee, P.; Shanker, R. Prevalence of multi antimicrobial agent resistant, shigatoxin and enterotoxin producing Escherichia coli in surface waters of river Ganga Environ. Sci. Technol. 2007, 41, 7383-7388
21. Ram, S.; Vajpayee, P.; Shanker, R. Enterotoxigenic Escherichia coli in sewage-impacted waters and aquatic weeds: quantitative PCR for culture-independent enumeration J. Appl. Microbiol. 2010, 108, 1007-1014
22. Schefler, W. C. Statistics for Biological Sciences; Addison-Wesley Publishing Company: Menlo Park, CA, 1969.
23. Gomez, K. A.; Gomez, A. A. Statistical Procedures for Agricultural Research; Wiley: New York, 1984.
24. Ochiai, R. L.; Acosta, C. J.; Danovaro-Holliday, M. C.; Baiqing, D.; Bhattacharya, S. K.; Agtini, M. D. Domi Typhoid Study Group. A study of typhoid fever in five Asian countries: disease burden and implications for controls Bull. World Health Org. 2008, 86, 260-268
25. Byappanahalli, M. N.; Sawdey, R.; Ishii, S.; Shively, D. A.; Ferguson, J. A.; Whitman, R. L.; Sadowsky, M. J. Seasonal stability of Cladophora -associated Salmonella in Lake Michigan watersheds Water Res. 2009, 43, 806-814
26. Singh, G.; Vajpayee, P.; Ram, S.; Shanker, R. Environmental reservoirs for enterotoxigenic Escherichia coli in south Asian Gangetic riverine system Environ. Sci. Technol. 2010, 44, 6475-6480
27. Badgley, B. D.; Thomas, F. I. M.; Harwood, V. J. Quantifying environmental reservoirs of fecal indicator bacteria associated with sediment and submerged aquatic vegetation Environ Microbiol. 2011, 13, 932-942
28. Colwell, R. R. Global climate and infectious disease: the cholera paradigm Science 1996, 274, 2031-2025
29. Setti, I.; Rodriguez-Castro, A.; Pata, M. P.; Cadarso-Suarez, C.; Yacoubi, B.; Bensmael, L.; Moukrim, A.; Martinez-Urtaza, J. Characteristics and Dynamics of Salmonella Contamination along the Coast of Agadir, Morocco Appl. Environ. Microbiol. 2009, 75, 7700-7709
30. Bahl, R.; Sinha, A.; Poulos, C.; Whittington, D.; Sazawal, S.; Kumar, R. Costs of illness due to typhoid fever in an Indian urban slum community: implications for vaccination policy J. Health Popul. Nutr. 2004, 22, 304-310
31. Brooks, W. A.; Hossain, A.; Goswami, D.; Nahar, K.; Alam, K.; Ahmed, N. Bacteremic typhoid fever in children in an urban slum, Bangladesh Emerg. Infect. Dis. 2005, 11, 326-329