-
1
-
-
0027525870
-
The 5' untranslated region of the I factor, a long interspersed nuclear element-like retrotransposon of Drosophila melanogaster, contains an internal promoter and sequences that regulate expression
-
McLean, C., Bucheton, A. and Finnegan, D.J. (1993) The 50 untranslated region of the I factor, a long interspersed nuclear element-like retrotransposon of Drosophila melanogaster, contains an internal promoter and sequences that regulate expression. Mol. Cell. Biol., 13, 1042-1050. (Pubitemid 23040271)
-
(1993)
Molecular and Cellular Biology
, vol.13
, Issue.2
, pp. 1042-1050
-
-
McLean, C.1
Bucheton, A.2
Finnegan, D.J.3
-
2
-
-
0024297806
-
Jockey, a mobile Drosophila element similar to mammalian LINEs, is transcribed from the internal promoter by RNA polymerase II
-
Mizrokhi, L.J., Georgieva, S.G. and Ilyin, Y.V. (1988) Jockey, a mobile Drosophila element similar to mammalian LINEs, is transcribed from the internal promoter by RNA polymerase II. Cell, 54, 685-691.
-
(1988)
Cell
, vol.54
, pp. 685-691
-
-
Mizrokhi, L.J.1
Georgieva, S.G.2
Ilyin, Y.V.3
-
3
-
-
0025223152
-
Identification, characterization, and cell specificity of a human LINE-1 promoter
-
Swergold, G.D. (1990) Identification, characterization, and cell specificity of a human LINE-1 promoter. Mol. Cell. Biol., 10, 6718-6729. (Pubitemid 120004617)
-
(1990)
Molecular and Cellular Biology
, vol.10
, Issue.12
, pp. 6718-6729
-
-
Swergold, G.D.1
-
4
-
-
0033559056
-
Analysis of the promoter from an expanding mouse retrotransposon subfamily
-
DOI 10.1006/geno.1998.5729
-
DeBerardinis, R.J. and Kazazian, H.H. Jr (1999) Analysis of the promoter from an expanding mouse retrotransposon subfamily. Genomics, 56, 317-323. (Pubitemid 29159912)
-
(1999)
Genomics
, vol.56
, Issue.3
, pp. 317-323
-
-
Deberardinis, R.J.1
Kazazian Jr., H.H.2
-
5
-
-
34249862482
-
The L1Tc non-LTR retrotransposon of Trypanosoma cruzi contains an internal RNA-pol II-dependent promoter that strongly activates gene transcription and generates unspliced transcripts
-
DOI 10.1093/nar/gkl1137
-
Heras, S.R., Lopez, M.C., Olivares, M. and Thomas, M.C. (2007) The L1Tc non-LTR retrotransposon of Trypanosoma cruzi contains an internal RNA-pol II-dependent promoter that strongly activates gene transcription and generates unspliced transcripts. Nucleic Acids Res., 35, 2199-2214. (Pubitemid 47073708)
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.7
, pp. 2199-2214
-
-
Heras, S.R.1
Lopez, M.C.2
Olivares, M.3
Thomas, M.C.4
-
6
-
-
0027450385
-
Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: A mechanism for non-LTR retrotransposition
-
DOI 10.1016/0092-8674(93)90078-5
-
Luan, D.D., Korman, M.H., Jakubczak, J.L. and Eickbush, T.H. (1993) Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: a mechanism for non-LTR retrotransposition. Cell, 72, 595-605. (Pubitemid 23077747)
-
(1993)
Cell
, vol.72
, Issue.4
, pp. 595-605
-
-
Luan, D.D.1
Korman, M.H.2
Jakubczak, J.L.3
Eickbush, T.H.4
-
7
-
-
0028902026
-
Characterization of a non-long terminal repeat retrotransposon cDNA (L1Tc) from Trypanosoma cruzi: Homology of the first ORF with the ape family of DNA repair enzymes
-
Martin, F., Maranon, C., Olivares, M., Alonso, C. and Lopez, M.C. (1995) Characterization of a non-long terminal repeat retrotransposon cDNA (L1Tc) from Trypanosoma cruzi: homology of the first ORF with the ape family of DNA repair enzymes. J. Mol. Biol., 247, 49-59.
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 49-59
-
-
Martin, F.1
Maranon, C.2
Olivares, M.3
Alonso, C.4
Lopez, M.C.5
-
8
-
-
0030770613
-
The open reading frame 1 of the L1Tc retrotransposon of Trypanosoma cruzi codes for a protein with apurinic-apyrimidinic nuclease activity
-
DOI 10.1074/jbc.272.40.25224
-
Olivares, M., Alonso, C. and Lopez, M.C. (1997) The open reading frame 1 of the L1Tc retrotransposon of Trypanosoma cruzi codes for a protein with apurinic-apyrimidinic nuclease activity. J. Biol. Chem., 272, 25224-25228. (Pubitemid 27415710)
-
(1997)
Journal of Biological Chemistry
, vol.272
, Issue.40
, pp. 25224-25228
-
-
Olivares, M.1
Alonso, C.2
Lopez, M.C.3
-
9
-
-
0347361465
-
Characterization of reverse transcriptase activity of the L1Tc retroelement from Trypanosoma cruzi
-
DOI 10.1007/s00018-003-3342-y
-
Garcia-Perez, J.L., Gonzalez, C.I., Thomas, M.C., Olivares, M. and Lopez, M.C. (2003) Characterization of reverse transcriptase activity of the L1Tc retroelement from Trypanosoma cruzi. Cell. Mol. Life Sci., 60, 2692-2701. (Pubitemid 38041369)
-
(2003)
Cellular and Molecular Life Sciences
, vol.60
, Issue.12
, pp. 2692-2701
-
-
Garcia-Perez, J.L.1
Gonzalez, C.I.2
Thomas, M.C.3
Olivares, M.4
Lopez, M.C.5
-
10
-
-
0037008672
-
The non-LTR (long terminal repeat) retrotransposon L1Tc from Trypanosoma cruzi codes for a protein with RNase H activity
-
DOI 10.1074/jbc.M202896200
-
Olivares, M., Garcia-Perez, J.L., Thomas, M.C., Heras, S.R. and Lopez, M.C. (2002) The non-LTR (long terminal repeat) retrotransposon L1Tc from Trypanosoma cruzi codes for a protein with RNase H activity. J. Biol. Chem., 277, 28025-28030. (Pubitemid 34966753)
-
(2002)
Journal of Biological Chemistry
, vol.277
, Issue.31
, pp. 28025-28030
-
-
Olivares, M.1
Garcia-Perez, J.L.2
Carmen Thomas, M.3
Heras, S.R.4
Lopezl, M.C.5
-
11
-
-
27144556091
-
2 zinc finger motifs and is endowed with nucleic acid chaperone activity
-
DOI 10.1128/MCB.25.21.9209-9220.2005
-
Heras, S.R., Lopez, M.C., Garcia-Perez, J.L., Martin, S.L. and Thomas, M.C. (2005) The L1Tc C-terminal domain from Trypanosoma cruzi non-long terminal repeat retrotransposon codes for a protein that bears two C2H2 zinc finger motifs and is endowed with nucleic acid chaperone activity. Mol. Cell. Biol., 25, 9209-9220. (Pubitemid 41507824)
-
(2005)
Molecular and Cellular Biology
, vol.25
, Issue.21
, pp. 9209-9220
-
-
Heras, S.R.1
Lopez, M.C.2
Garcia-Perez, J.L.3
Martin, S.L.4
Thomas, M.C.5
-
12
-
-
73149098339
-
Nucleic-acid-binding properties of the C2-L1Tc nucleic acid chaperone encoded by L1Tc retrotransposon
-
Heras, S.R., Thomas, M.C., Macias, F., Patarroyo, M.E., Alonso, C. and Lopez, M.C. (2009) Nucleic-acid-binding properties of the C2-L1Tc nucleic acid chaperone encoded by L1Tc retrotransposon. Biochem. J., 424, 479-490.
-
(2009)
Biochem. J.
, vol.424
, pp. 479-490
-
-
Heras, S.R.1
Thomas, M.C.2
MacIas, F.3
Patarroyo, M.E.4
Alonso, C.5
Lopez, M.C.6
-
13
-
-
33745317585
-
L1Tc non-LTR retrotransposons from Trypanosoma cruzi contain a functional viral-like self-cleaving 2A sequence in frame with the active proteins they encode
-
DOI 10.1007/s00018-006-6038-2
-
Heras, S.R., Thomas, M.C., Garcia-Canadas, M., de Felipe, P., Garcia-Perez, J.L., Ryan, M.D. and Lopez, M.C. (2006) L1Tc non-LTR retrotransposons from Trypanosoma cruzi contain a functional viral-like self-cleaving 2A sequence in frame with the active proteins they encode. Cell. Mol. Life Sci., 63, 1449-1460. (Pubitemid 43939024)
-
(2006)
Cellular and Molecular Life Sciences
, vol.63
, Issue.12
, pp. 1449-1460
-
-
Heras, S.R.1
Thomas, M.C.2
Garcia-Canadas, M.3
De Felipe, P.4
Garcia-Perez, J.L.5
Ryan, M.D.6
Lopez, M.C.7
-
14
-
-
0033810765
-
Genomic clustering of the Trypanosoma cruzi nonlong terminal L1Tc retrotransposon with defined interspersed repeated DNA elements
-
Olivares, M., del Carmen Thomas, M., Lopez-Barajas, A., Requena, J.M., Garcia-Perez, J.L., Angel, S., Alonso, C. and Lopez, M.C. (2000) Genomic clustering of the Trypanosoma cruzi nonlong terminal L1Tc retrotransposon with defined interspersed repeated DNA elements. Electrophoresis, 21, 2973-2982.
-
(2000)
Electrophoresis
, vol.21
, pp. 2973-2982
-
-
Olivares, M.1
Del Carmen Thomas, M.2
Lopez-Barajas, A.3
Requena, J.M.4
Garcia-Perez, J.L.5
Angel, S.6
Alonso, C.7
Lopez, M.C.8
-
15
-
-
30744459346
-
The Trypanosoma cruzi L1Tc and NARTc non-LTR retrotransposons show relative site specificity for insertion
-
DOI 10.1093/molbev/msj046
-
Bringaud, F., Bartholomeu, D.C., Blandin, G., Delcher, A., Baltz, T., El-Sayed, N.M. and Ghedin, E. (2006) The Trypanosoma cruzi L1Tc and NARTc non-LTR retrotransposons show relative site specificity for insertion. Mol. Biol. Evol., 23, 411-420. (Pubitemid 43100055)
-
(2006)
Molecular Biology and Evolution
, vol.23
, Issue.2
, pp. 411-420
-
-
Bringaud, F.1
Bartholomeu, D.C.2
Blandin, G.3
Delcher, A.4
Baltz, T.5
El-Sayed, N.M.A.6
Ghedin, E.7
-
16
-
-
0037057105
-
Identification of non-autonomous non-LTR retrotransposons in the genome of Trypanosoma cruzi
-
DOI 10.1016/S0166-6851(02)00167-6, PII S0166685102001676
-
Bringaud, F., Garcia-Perez, J.L., Heras, S.R., Ghedin, E., El-Sayed, N.M., Andersson, B., Baltz, T. and Lopez, M.C. (2002) Identification of non-autonomous non-LTR retrotransposons in the genome of Trypanosoma cruzi. Mol. Biochem. Parasitol., 124, 73-78. (Pubitemid 35223304)
-
(2002)
Molecular and Biochemical Parasitology
, vol.124
, Issue.1-2
, pp. 73-78
-
-
Bringaud, F.1
Garcia-Perez, J.L.2
Heras, S.R.3
Ghedin, E.4
El-Sayed, N.M.5
Andersson, B.6
Baltz, T.7
Lopez, M.C.8
-
17
-
-
70349667789
-
Trypanosomatid genomes contain several subfamilies of ingi-related retroposons
-
Bringaud, F., Berriman, M. and Hertz-Fowler, C. (2009) Trypanosomatid genomes contain several subfamilies of ingi-related retroposons. Eukaryot. Cell, 8, 1532-1542.
-
(2009)
Eukaryot. Cell
, vol.8
, pp. 1532-1542
-
-
Bringaud, F.1
Berriman, M.2
Hertz-Fowler, C.3
-
18
-
-
34848913443
-
Members of a large retroposon family are determinants of post-transcriptional gene expression in Leishmania
-
DOI 10.1371/journal.ppat.0030136
-
Bringaud, F., Muller, M., Cerqueira, G.C., Smith, M., Rochette, A., El-Sayed, N.M., Papadopoulou, B. and Ghedin, E. (2007) Members of a large retroposon family are determinants of post-transcriptional gene expression in Leishmania. PLoS Pathog., 3, 1291-1307. (Pubitemid 47510282)
-
(2007)
PLoS Pathogens
, vol.3
, Issue.9
, pp. 1291-1307
-
-
Bringaud, F.1
Muller, M.2
Cerqueira, G.C.3
Smith, M.4
Rochette, A.5
El-Sayed, N.M.A.6
Papadopoulou, B.7
Ghedin, E.8
-
19
-
-
77953379568
-
R2 retrotransposons encode a self-cleaving ribozyme for processing from an rRNA cotranscript
-
Eickbush, D.G. and Eickbush, T.H. R2 retrotransposons encode a self-cleaving ribozyme for processing from an rRNA cotranscript. Mol. Cell. Biol., 30, 3142-3150.
-
Mol. Cell. Biol.
, vol.30
, pp. 3142-3150
-
-
Eickbush, D.G.1
Eickbush, T.H.2
-
20
-
-
0026651086
-
Small catalytic RNAs
-
Symons, R.H. (1992) Small catalytic RNAs. Annu. Rev. Biochem., 61, 641-671.
-
(1992)
Annu. Rev. Biochem.
, vol.61
, pp. 641-671
-
-
Symons, R.H.1
-
21
-
-
51649103765
-
Catalytic strategies of self-cleaving ribozymes
-
Cochrane, J.C. and Strobel, S.A. (2008) Catalytic strategies of self-cleaving ribozymes. Acc. Chem. Res., 41, 1027-1035.
-
(2008)
Acc. Chem. Res.
, vol.41
, pp. 1027-1035
-
-
Cochrane, J.C.1
Strobel, S.A.2
-
22
-
-
0030803589
-
Self-cleaving ribozymes of hepatitis delta virus RNA
-
Been, M.D. and Wickham, G.S. (1997) Self-cleaving ribozymes of hepatitis delta virus RNA. Eur. J. Biochem., 247, 741-753. (Pubitemid 27337024)
-
(1997)
European Journal of Biochemistry
, vol.247
, Issue.3
, pp. 741-753
-
-
Been, M.D.1
Wickham, G.S.2
-
23
-
-
33749034196
-
A genomewide search for ribozymes reveals an HDV-like sequence in the human CPEB3 gene
-
DOI 10.1126/science.1129308
-
Salehi-Ashtiani, K., Luptak, A., Litovchick, A. and Szostak, J.W. (2006) A genomewide search for ribozymes reveals an HDV-like sequence in the human CPEB3 gene. Science, 313, 1788-1792. (Pubitemid 44454155)
-
(2006)
Science
, vol.313
, Issue.5794
, pp. 1788-1792
-
-
Salehi-Ashtiani, K.1
Luptak, A.2
Litovchick, A.3
Szostak, J.W.4
-
24
-
-
72449145407
-
Widespread occurrence of self-cleaving ribozymes
-
Webb, C.H., Riccitelli, N.J., Ruminski, D.J. and Luptak, A. (2009) Widespread occurrence of self-cleaving ribozymes. Science, 326, 953.
-
(2009)
Science
, vol.326
, pp. 953
-
-
Webb, C.H.1
Riccitelli, N.J.2
Ruminski, D.J.3
Luptak, A.4
-
25
-
-
33644854246
-
The dicistronic RNA from the mouse LINE-1 retrotransposon contains an internal ribosome entry site upstream of each ORF: Implications for retrotransposition
-
DOI 10.1093/nar/gkj490
-
Li, P.W., Li, J., Timmerman, S.L., Krushel, L.A. and Martin, S.L. (2006) The dicistronic RNA from the mouse LINE-1 retrotransposon contains an internal ribosome entry site upstream of each ORF: implications for retrotransposition. Nucleic Acids Res., 34, 853-864. (Pubitemid 43380670)
-
(2006)
Nucleic Acids Research
, vol.34
, Issue.3
, pp. 853-864
-
-
Li, P.W.-L.1
Li, J.2
Timmerman, S.L.3
Krushel, L.A.4
Martin, S.L.5
-
26
-
-
0038373448
-
Detection of tRNA-like structure through RNase P cleavage of viral internal ribosome entry site RNAs near the AUG start triplet
-
DOI 10.1074/jbc.M304052200
-
Lyons, A.J. and Robertson, H.D. (2003) Detection of tRNA-like structure through RNase P cleavage of viral internal ribosome entry site RNAs near the AUG start triplet. J. Biol. Chem., 278, 26844-26850. (Pubitemid 36876835)
-
(2003)
Journal of Biological Chemistry
, vol.278
, Issue.29
, pp. 26844-26850
-
-
Lyons, A.J.1
Robertson, H.D.2
-
27
-
-
34249103881
-
Characterization of a cyanobacterial RNase P ribozyme recognition motif in the IRES of foot-and-mouth disease virus reveals a unique structural element
-
DOI 10.1261/rna.506607
-
Serrano, P., Gomez, J. and Martinez-Salas, E. (2007) Characterization of a cyanobacterial RNase P ribozyme recognition motif in the IRES of foot-and-mouth disease virus reveals a unique structural element. RNA, 13, 849-859. (Pubitemid 46799819)
-
(2007)
RNA
, vol.13
, Issue.6
, pp. 849-859
-
-
Serrano, P.1
Gomez, J.2
Martinez-Salas, E.3
-
28
-
-
77953894191
-
The human HDV-like CPEB3 ribozyme is intrinsically fast-reacting
-
Chadalavada, D.M., Gratton, E.A. and Bevilacqua, P.C. The human HDV-like CPEB3 ribozyme is intrinsically fast-reacting. Biochemistry, 49, 5321-5330.
-
Biochemistry
, vol.49
, pp. 5321-5330
-
-
Chadalavada, D.M.1
Gratton, E.A.2
Bevilacqua, P.C.3
-
29
-
-
0034712097
-
General acid-base catalysis in the mechanism of a hepatitis delta virus ribozyme
-
DOI 10.1126/science.287.5457.1493
-
Nakano, S., Chadalavada, D.M. and Bevilacqua, P.C. (2000) General acid-base catalysis in the mechanism of a hepatitis delta virus ribozyme. Science, 287, 1493-1497. (Pubitemid 30127144)
-
(2000)
Science
, vol.287
, Issue.5457
, pp. 1493-1497
-
-
Nakano, S.-I.1
Chadalavada, D.M.2
Bevilacqua, P.C.3
-
30
-
-
0023713973
-
The left end of rat L1 (L1Rn, long interspersed repeated) DNA which is a CpG island can function as a promoter
-
Nur, I., Pascale, E. and Furano, A.V. (1988) The left end of rat L1 (L1Rn, long interspersed repeated) DNA which is a CpG island can function as a promoter. Nucleic Acids Res., 16, 9233-9251.
-
(1988)
Nucleic Acids Res.
, vol.16
, pp. 9233-9251
-
-
Nur, I.1
Pascale, E.2
Furano, A.V.3
-
31
-
-
61449167094
-
The pattern of R2 retrotransposon activity in natural populations of Drosophila simulans reflects the dynamic nature of the rDNA locus
-
Zhou, J. and Eickbush, T.H. (2009) The pattern of R2 retrotransposon activity in natural populations of Drosophila simulans reflects the dynamic nature of the rDNA locus. PLoS Genetics, 5, e1000386.
-
(2009)
PLoS Genetics
, vol.5
-
-
Zhou, J.1
Eickbush, T.H.2
-
32
-
-
30344439503
-
Les trypanosomatides sous les feux du séquençage
-
Bringaud, F. (2005) [Comparative genomics of trypanosomatid parasitic protozoa]. Med. Sci., 21, 1027-1028. (Pubitemid 43058028)
-
(2005)
Medecine/Sciences
, vol.21
, Issue.12
, pp. 1027-1028
-
-
Bringaud, F.1
-
33
-
-
84857112237
-
Processing of insect retrotransposons by self-cleaving ribozymes
-
Available from Nature Precedings
-
Ruminski, D.J., Webb, C.H., Riccitelli, N.J. and Luptak, A. (2010) Processing of insect retrotransposons by self-cleaving ribozymes. Nature Precedings, Available from Nature Precedings 〈http://hdl. handle.net/10101/npre.2010.4333.1〉.
-
(2010)
Nature Precedings
-
-
Ruminski, D.J.1
Webb, C.H.2
Riccitelli, N.J.3
Luptak, A.4
-
34
-
-
48449095385
-
The Vienna RNA websuite
-
Gruber, A.R., Lorenz, R., Bernhart, S.H., Neubock, R. and Hofacker, I.L. (2008) The Vienna RNA websuite. Nucleic Acids Res., 36, W70-W74.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Gruber, A.R.1
Lorenz, R.2
Bernhart, S.H.3
Neubock, R.4
Hofacker, I.L.5
-
35
-
-
68149125334
-
The mechanism of acidic hydrolysis of esters explains the HDV ribozyme activity
-
Fedoruk-Wyszomirska, A., Giel-Pietraszuk, M., Wyszko, E., Szymanski, M., Ciesiolka, J., Barciszewska, M.Z. and Barciszewski, J. (2009) The mechanism of acidic hydrolysis of esters explains the HDV ribozyme activity. Mol. Biol. Rep., 36, 1647-1650.
-
(2009)
Mol. Biol. Rep.
, vol.36
, pp. 1647-1650
-
-
Fedoruk-Wyszomirska, A.1
Giel-Pietraszuk, M.2
Wyszko, E.3
Szymanski, M.4
Ciesiolka, J.5
Barciszewska, M.Z.6
Barciszewski, J.7
-
36
-
-
61749093844
-
A catalytic metal ion interacts with the cleavage Site G.U wobble in the HDV ribozyme
-
Chen, J.H., Gong, B., Bevilacqua, P.C., Carey, P.R. and Golden, B.L. (2009) A catalytic metal ion interacts with the cleavage Site G.U wobble in the HDV ribozyme. Biochemistry, 48, 1498-1507.
-
(2009)
Biochemistry
, vol.48
, pp. 1498-1507
-
-
Chen, J.H.1
Gong, B.2
Bevilacqua, P.C.3
Carey, P.R.4
Golden, B.L.5
-
37
-
-
77955258795
-
A 1.9 A crystal structure of the HDV ribozyme precleavage suggests both Lewis acid and general acid mechanisms contribute to phosphodiester cleavage
-
Chen, J.H., Yajima, R., Chadalavada, D.M., Chase, E., Bevilacqua, P.C. and Golden, B.L. A 1.9 A crystal structure of the HDV ribozyme precleavage suggests both Lewis acid and general acid mechanisms contribute to phosphodiester cleavage. Biochemistry, 49, 6508-6518.
-
Biochemistry
, vol.49
, pp. 6508-6518
-
-
Chen, J.H.1
Yajima, R.2
Chadalavada, D.M.3
Chase, E.4
Bevilacqua, P.C.5
Golden, B.L.6
-
38
-
-
36248964100
-
Wild-type is the optimal sequence of the HDV ribozyme under cotranscriptional conditions
-
DOI 10.1261/rna.778107
-
Chadalavada, D.M., Cerrone-Szakal, A.L. and Bevilacqua, P.C. (2007) Wild-type is the optimal sequence of the HDV ribozyme under cotranscriptional conditions. RNA, 13, 2189-2201. (Pubitemid 350127560)
-
(2007)
RNA
, vol.13
, Issue.12
, pp. 2189-2201
-
-
Chadalavada, D.M.1
Cerrone-Szakal, A.L.2
Bevilacqua, P.C.3
|