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Volumn 424, Issue 3, 2009, Pages 479-490

Nucleic-acid-binding properties of the C2-L1Tc nucleic acid chaperone encoded by L1Tc retrotransposon

Author keywords

Double stranded nucleic acid; Long interspersed nuclear element (LINE); Nucleic acid binding; Nucleic acid chaperone; Retrotransposition; Single stranded nucleic acid; Trypanosoma cruzi; Zinc finger

Indexed keywords

DOUBLE-STRANDED NUCLEIC ACID; LONG INTERSPERSED NUCLEAR ELEMENT (LINE); RETROTRANSPOSITION; TRYPANOSOMA CRUZI; ZINC FINGER;

EID: 73149098339     PISSN: 02646021     EISSN: 14708728     Source Type: Journal    
DOI: 10.1042/BJ20090766     Document Type: Article
Times cited : (8)

References (44)
  • 1
    • 0242636324 scopus 로고    scopus 로고
    • The outs and ins of transposition: From mu to kangaroo
    • Curcio, M. J. and Derbyshire, K. M. (2003) The outs and ins of transposition: from mu to kangaroo. Nat. Rev. Mol. Cell. Biol. 4, 865-877
    • (2003) Nat. Rev. Mol. Cell. Biol , vol.4 , pp. 865-877
    • Curcio, M.J.1    Derbyshire, K.M.2
  • 2
    • 0024470037 scopus 로고
    • Transcription and reverse transcription of retrotransposons
    • Boeke, J. D. and Corces, V. G. (1989) Transcription and reverse transcription of retrotransposons. Annu. Rev. Microbiol. 43, 403-434
    • (1989) Annu. Rev. Microbiol , vol.43 , pp. 403-434
    • Boeke, J.D.1    Corces, V.G.2
  • 3
    • 0027450385 scopus 로고
    • Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: A mechanism for non-LTR retrotransposition
    • Luan, D. D., Korman, M. H., Jakubczak, J. L. and Eickbush, T. H. (1993) Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: a mechanism for non-LTR retrotransposition. Cell 72, 595-605
    • (1993) Cell , vol.72 , pp. 595-605
    • Luan, D.D.1    Korman, M.H.2    Jakubczak, J.L.3    Eickbush, T.H.4
  • 5
    • 0036092497 scopus 로고    scopus 로고
    • Ancient lineages of non-LTR retrotransposons in the primitive eukaryote, Giardia lamblia
    • Burke, W. D., Malik, H. S., Rich, S. M. and Eickbush, T. H. (2002) Ancient lineages of non-LTR retrotransposons in the primitive eukaryote, Giardia lamblia. Mol. Biol. Evol. 19, 619-630
    • (2002) Mol. Biol. Evol , vol.19 , pp. 619-630
    • Burke, W.D.1    Malik, H.S.2    Rich, S.M.3    Eickbush, T.H.4
  • 6
    • 0030042251 scopus 로고    scopus 로고
    • Cytoplasmic ribonucleoprotein complexes containing human LINE-1 protein and RNA
    • Hohjoh, H. and Singer, M. F. (1996) Cytoplasmic ribonucleoprotein complexes containing human LINE-1 protein and RNA. EMBO J. 15, 630-639
    • (1996) EMBO J , vol.15 , pp. 630-639
    • Hohjoh, H.1    Singer, M.F.2
  • 7
    • 0030870342 scopus 로고    scopus 로고
    • Sequence-specific single-strand RNA binding protein encoded by the human LINE-1 retrotransposon
    • Hohjoh, H. and Singer, M. F. (1997) Sequence-specific single-strand RNA binding protein encoded by the human LINE-1 retrotransposon. EMBO J. 16, 6034-6043
    • (1997) EMBO J , vol.16 , pp. 6034-6043
    • Hohjoh, H.1    Singer, M.F.2
  • 8
    • 0030961149 scopus 로고    scopus 로고
    • In vitro properties of the first ORF protein from mouse LINE-1 support its role in ribonucleoprotein particle formation during retrotransposition
    • Kolosha, V. O. and Martin, S. L. (1997) In vitro properties of the first ORF protein from mouse LINE-1 support its role in ribonucleoprotein particle formation during retrotransposition. Proc. Natl. Acad. Sci. U.S.A. 94, 10155-10160
    • (1997) Proc. Natl. Acad. Sci. U.S.A , vol.94 , pp. 10155-10160
    • Kolosha, V.O.1    Martin, S.L.2
  • 9
    • 0035163939 scopus 로고    scopus 로고
    • Nucleic acid chaperone activity of the ORF1 protein from the mouse LINE-1 retrotransposon
    • Martin, S. L. and Bushman, F. D. (2001) Nucleic acid chaperone activity of the ORF1 protein from the mouse LINE-1 retrotransposon. Mol. Cell. Biol. 21, 467-475
    • (2001) Mol. Cell. Biol , vol.21 , pp. 467-475
    • Martin, S.L.1    Bushman, F.D.2
  • 11
    • 0030746164 scopus 로고    scopus 로고
    • A LINE-like transposable element in Drosophila, the I factor, encodes a protein with properties similar to those of retroviral nucleocapsids
    • Dawson, A., Hartswood, E., Paterson, T. and Finnegan, D. J. (1997) A LINE-like transposable element in Drosophila, the I factor, encodes a protein with properties similar to those of retroviral nucleocapsids. EMBO J. 16, 4448-4455
    • (1997) EMBO J , vol.16 , pp. 4448-4455
    • Dawson, A.1    Hartswood, E.2    Paterson, T.3    Finnegan, D.J.4
  • 12
    • 85158069207 scopus 로고    scopus 로고
    • Origins and evolution of retrotransposons
    • Craig, N. L, Craigie, R, Gellert, M. and Lambowitz, A. M, eds, pp, ASM Press, Washington DC
    • Eickbush, T. H. and Malik, H. S. (2002) Origins and evolution of retrotransposons. In Mobile DNA II (Craig, N. L., Craigie, R., Gellert, M. and Lambowitz, A. M., eds), pp. 1111-1146, ASM Press, Washington DC
    • (2002) Mobile DNA II , pp. 1111-1146
    • Eickbush, T.H.1    Malik, H.S.2
  • 14
    • 0030448408 scopus 로고    scopus 로고
    • Genome research and evolution in trypanosomes
    • Donelson, J. E. (1996) Genome research and evolution in trypanosomes. Curr. Opin. Genet. Dev. 6, 699-703
    • (1996) Curr. Opin. Genet. Dev , vol.6 , pp. 699-703
    • Donelson, J.E.1
  • 15
    • 0028902026 scopus 로고
    • Characterization of a non-long terminal repeat retrotransposon cDNA (L1Tc) from Trypanosoma cruzi: Homology of the first ORF with the ape family of DNA repair enzymes
    • Martin, F., Maranon, C., Olivares, M., Alonso, C. and Lopez, M. C. (1995) Characterization of a non-long terminal repeat retrotransposon cDNA (L1Tc) from Trypanosoma cruzi: homology of the first ORF with the ape family of DNA repair enzymes. J. Mol. Biol. 247, 49-59
    • (1995) J. Mol. Biol , vol.247 , pp. 49-59
    • Martin, F.1    Maranon, C.2    Olivares, M.3    Alonso, C.4    Lopez, M.C.5
  • 16
    • 0033810765 scopus 로고    scopus 로고
    • Genomic clustering of the Trypanosoma cruzi non-long terminal L1Tc retrotransposon with defined interspersed repeated DNA elements
    • Olivares, M., Thomas, M. C., Lopez-Barajas, A., Requena, J. M., Garcia-Perez, J. L., Angel, S., Alonso, C. and Lopez, M. C. (2000) Genomic clustering of the Trypanosoma cruzi non-long terminal L1Tc retrotransposon with defined interspersed repeated DNA elements. Electrophoresis 21, 2973-2982
    • (2000) Electrophoresis , vol.21 , pp. 2973-2982
    • Olivares, M.1    Thomas, M.C.2    Lopez-Barajas, A.3    Requena, J.M.4    Garcia-Perez, J.L.5    Angel, S.6    Alonso, C.7    Lopez, M.C.8
  • 18
    • 0030770613 scopus 로고    scopus 로고
    • The open reading frame 1 of the L1Tc retrotransposon of Trypanosoma cruzi codes for a protein with apurinic-apyrimidinic nuclease activity
    • Olivares, M., Alonso, C. and Lopez, M. C. (1997) The open reading frame 1 of the L1Tc retrotransposon of Trypanosoma cruzi codes for a protein with apurinic-apyrimidinic nuclease activity. J. Biol. Chem. 272, 25224-25228
    • (1997) J. Biol. Chem , vol.272 , pp. 25224-25228
    • Olivares, M.1    Alonso, C.2    Lopez, M.C.3
  • 19
    • 0033588027 scopus 로고    scopus 로고
    • The L1Tc, long interspersed nucleotide element from Trypanosoma cruzi, encodes a protein with 3′-phosphatase and 3′-phosphodiesterase enzymatic activities
    • Olivares, M., Thomas, M. C., Alonso, C. and Lopez, M. C. (1999) The L1Tc, long interspersed nucleotide element from Trypanosoma cruzi, encodes a protein with 3′-phosphatase and 3′-phosphodiesterase enzymatic activities. J. Biol. Chem. 274, 23883-23886
    • (1999) J. Biol. Chem , vol.274 , pp. 23883-23886
    • Olivares, M.1    Thomas, M.C.2    Alonso, C.3    Lopez, M.C.4
  • 20
    • 0347361465 scopus 로고    scopus 로고
    • Characterization of reverse transcriptase activity of the L1Tc retroelement from Trypanosoma cruzi
    • Garcia-Perez, J. L., Gonzalez, C. I., Thomas, M. C., Olivares, M. and Lopez, M. C. (2003) Characterization of reverse transcriptase activity of the L1Tc retroelement from Trypanosoma cruzi. Cell. Mol. Life Sci. 60, 2692-2701
    • (2003) Cell. Mol. Life Sci , vol.60 , pp. 2692-2701
    • Garcia-Perez, J.L.1    Gonzalez, C.I.2    Thomas, M.C.3    Olivares, M.4    Lopez, M.C.5
  • 21
    • 0037008672 scopus 로고    scopus 로고
    • The non-LTR (long terminal repeat) retrotransposon L1Tc from Trypanosoma cruzi codes for a protein with RNase H activity
    • Olivares, M., Garcia-Perez, J. L., Thomas, M. C., Heras, S. R. and Lopez, M. C. (2002) The non-LTR (long terminal repeat) retrotransposon L1Tc from Trypanosoma cruzi codes for a protein with RNase H activity. J. Biol. Chem. 277, 28025-28030
    • (2002) J. Biol. Chem , vol.277 , pp. 28025-28030
    • Olivares, M.1    Garcia-Perez, J.L.2    Thomas, M.C.3    Heras, S.R.4    Lopez, M.C.5
  • 22
    • 27144556091 scopus 로고    scopus 로고
    • The L1Tc C-terminal domain from Trypanosoma cruzi non-long terminal repeat retrotransposon codes for a protein that bears two C2H2 zinc finger motifs and is endowed with nucleic acid chaperone activity
    • Heras, S. R., Lopez, M. C., Garcia-Perez, J. L., Martin, S. L. and Thomas, M. C. (2005) The L1Tc C-terminal domain from Trypanosoma cruzi non-long terminal repeat retrotransposon codes for a protein that bears two C2H2 zinc finger motifs and is endowed with nucleic acid chaperone activity. Mol. Cell. Biol. 25, 9209-9220
    • (2005) Mol. Cell. Biol , vol.25 , pp. 9209-9220
    • Heras, S.R.1    Lopez, M.C.2    Garcia-Perez, J.L.3    Martin, S.L.4    Thomas, M.C.5
  • 23
    • 0037439997 scopus 로고    scopus 로고
    • Structural classification of zinc fingers: Survey and summary
    • Krishna, S. S., Majumdar, I. and Grishin, N. V. (2003) Structural classification of zinc fingers: survey and summary. Nucleic Acids Res. 31, 532-550
    • (2003) Nucleic Acids Res , vol.31 , pp. 532-550
    • Krishna, S.S.1    Majumdar, I.2    Grishin, N.V.3
  • 24
    • 0032976398 scopus 로고    scopus 로고
    • The age and evolution of non-LTR retrotransposable elements
    • Malik, H. S., Burke, W. D. and Eickbush, T. H. (1999) The age and evolution of non-LTR retrotransposable elements. Mol. Biol. Evol. 16, 793-805
    • (1999) Mol. Biol. Evol , vol.16 , pp. 793-805
    • Malik, H.S.1    Burke, W.D.2    Eickbush, T.H.3
  • 25
    • 0019627519 scopus 로고
    • Quantitative monitoring of solid-phase peptide synthesis by the ninhydrin reaction
    • Sarin, V. K., Kent, S. B., Tam, J. P. and Merrifield, R. B. (1981) Quantitative monitoring of solid-phase peptide synthesis by the ninhydrin reaction. Anal. Biochem. 117, 147-157
    • (1981) Anal. Biochem , vol.117 , pp. 147-157
    • Sarin, V.K.1    Kent, S.B.2    Tam, J.P.3    Merrifield, R.B.4
  • 27
    • 34249862482 scopus 로고    scopus 로고
    • The L1Tc non-LTR retrotransposon of Trypanosoma cruzi contains an internal RNA-pol II-dependent promoter that strongly activates gene transcription and generates unspliced transcripts
    • Heras, S. R., Lopez, M. C., Olivares, M. and Thomas, M. C. (2007) The L1Tc non-LTR retrotransposon of Trypanosoma cruzi contains an internal RNA-pol II-dependent promoter that strongly activates gene transcription and generates unspliced transcripts. Nucleic Acids Res. 35, 2199-2214
    • (2007) Nucleic Acids Res , vol.35 , pp. 2199-2214
    • Heras, S.R.1    Lopez, M.C.2    Olivares, M.3    Thomas, M.C.4
  • 28
    • 0033966160 scopus 로고    scopus 로고
    • Molecular characterization of KMP11 from Trypanosoma cruzi: A cytoskeleton-associated protein regulated at the translational level
    • Thomas, M. C., Garcia-Perez, J. L., Alonso, C. and Lopez, M. C. (2000) Molecular characterization of KMP11 from Trypanosoma cruzi: a cytoskeleton-associated protein regulated at the translational level. DNA Cell Biol. 19, 47-57
    • (2000) DNA Cell Biol , vol.19 , pp. 47-57
    • Thomas, M.C.1    Garcia-Perez, J.L.2    Alonso, C.3    Lopez, M.C.4
  • 29
    • 0032740775 scopus 로고    scopus 로고
    • Comparative kinetic analysis of structural variants of the hairpin ribozyme reveals further potential to optimize its catalytic performance
    • Barroso-delJesus, A., Tabler, M. and Berzal-Herranz, A. (1999) Comparative kinetic analysis of structural variants of the hairpin ribozyme reveals further potential to optimize its catalytic performance. Antisense Nucleic Acid Drug Dev. 9, 433-440
    • (1999) Antisense Nucleic Acid Drug Dev , vol.9 , pp. 433-440
    • Barroso-delJesus, A.1    Tabler, M.2    Berzal-Herranz, A.3
  • 30
    • 0034331073 scopus 로고    scopus 로고
    • Finding nuclear localization signals
    • Cokol, M., Nair, R. and Rost, B. (2000) Finding nuclear localization signals. EMBO Rep. 1, 411-415
    • (2000) EMBO Rep , vol.1 , pp. 411-415
    • Cokol, M.1    Nair, R.2    Rost, B.3
  • 31
    • 14944374254 scopus 로고    scopus 로고
    • In vivo RNA localization of I factor, a non-LTR retrotransposon, requires a cis-acting signal in ORF2 and ORF1 protein
    • Seleme, M. C., Disson, O., Robin, S., Brun, C., Teninges, D. and Bucheton, A. (2005) In vivo RNA localization of I factor, a non-LTR retrotransposon, requires a cis-acting signal in ORF2 and ORF1 protein. Nucleic Acids Res. 33, 776-785
    • (2005) Nucleic Acids Res , vol.33 , pp. 776-785
    • Seleme, M.C.1    Disson, O.2    Robin, S.3    Brun, C.4    Teninges, D.5    Bucheton, A.6
  • 32
    • 27744486591 scopus 로고    scopus 로고
    • Ribonucleoprotein particle formation is necessary but not sufficient for LINE-1 retrotransposition
    • Kulpa, D. A. and Moran, J. V. (2005) Ribonucleoprotein particle formation is necessary but not sufficient for LINE-1 retrotransposition. Hum. Mol. Genet. 14, 3237-3248
    • (2005) Hum. Mol. Genet , vol.14 , pp. 3237-3248
    • Kulpa, D.A.1    Moran, J.V.2
  • 33
    • 33645217818 scopus 로고    scopus 로고
    • The ORF1 protein encoded by LINE-1: Structure and function during L1 retrotransposition
    • Martin, S. L. (2006) The ORF1 protein encoded by LINE-1: structure and function during L1 retrotransposition. J. Biomed. Biotechnol. 2006, 45621
    • (2006) J. Biomed. Biotechnol , vol.2006 , pp. 45621
    • Martin, S.L.1
  • 34
    • 0027464411 scopus 로고
    • Conformational and nucleic acid binding studies on the synthetic nucleocapsid protein of HIV-1
    • Surovoy, A., Dannull, J., Moelling, K. and Jung, G. (1993) Conformational and nucleic acid binding studies on the synthetic nucleocapsid protein of HIV-1. J. Mol. Biol. 229, 94-104
    • (1993) J. Mol. Biol , vol.229 , pp. 94-104
    • Surovoy, A.1    Dannull, J.2    Moelling, K.3    Jung, G.4
  • 35
    • 23144448275 scopus 로고    scopus 로고
    • Nucleic acid chaperone activity of HIV-1 nucleocapsid protein: Critical role in reverse transcription and molecular mechanism
    • Levin, J. G., Guo, J., Rouzina, I. and Musier-Forsyth, K (2005) Nucleic acid chaperone activity of HIV-1 nucleocapsid protein: critical role in reverse transcription and molecular mechanism. Prog. Nucleic Acid Res. Mol. Biol. 80, 217-286
    • (2005) Prog. Nucleic Acid Res. Mol. Biol , vol.80 , pp. 217-286
    • Levin, J.G.1    Guo, J.2    Rouzina, I.3    Musier-Forsyth, K.4
  • 36
    • 0034705568 scopus 로고    scopus 로고
    • The GAG-like protein of the yeast Ty1 retrotransposon contains a nucleic acid chaperone domain analogous to retroviral nucleocapsid proteins
    • Cristofari, G., Ficheux, D. and Darlix, J. L. (2000) The GAG-like protein of the yeast Ty1 retrotransposon contains a nucleic acid chaperone domain analogous to retroviral nucleocapsid proteins. J. Biol. Chem. 275, 19210-19217
    • (2000) J. Biol. Chem , vol.275 , pp. 19210-19217
    • Cristofari, G.1    Ficheux, D.2    Darlix, J.L.3
  • 37
    • 54549107984 scopus 로고    scopus 로고
    • A single amino acid substitution in ORF1 dramatically decreases L1 retrotransposiciton and provides insight into nucleic acid chaperone activity
    • Martin, S. L., Bushman, D., Wang, F., Wai-Lun Li, P., Walker, A., Cummiskey, J., Branciforte, D. and Williams, M. C. (2008) A single amino acid substitution in ORF1 dramatically decreases L1 retrotransposiciton and provides insight into nucleic acid chaperone activity. Nucleic Acids Res. 36, 5845-5854
    • (2008) Nucleic Acids Res , vol.36 , pp. 5845-5854
    • Martin, S.L.1    Bushman, D.2    Wang, F.3    Wai-Lun Li, P.4    Walker, A.5    Cummiskey, J.6    Branciforte, D.7    Williams, M.C.8
  • 38
    • 0025980399 scopus 로고
    • Sequence-specific binding of the N-terminal three-finger fragment of Xenopus transcription factor IIIA to the internal control region of a 5S RNA gene
    • Christensen, J. H., Hansen, P. K., Lillelund, O. and Thogersen, H. C. (1991) Sequence-specific binding of the N-terminal three-finger fragment of Xenopus transcription factor IIIA to the internal control region of a 5S RNA gene. FEBS Lett. 281, 181-184
    • (1991) FEBS Lett , vol.281 , pp. 181-184
    • Christensen, J.H.1    Hansen, P.K.2    Lillelund, O.3    Thogersen, H.C.4
  • 39
    • 0034604378 scopus 로고    scopus 로고
    • The role of the central zinc fingers of transcription factor IIIA in binding to 5S RNA
    • Searles, M. A., Lu, D. and Klug, A. (2000) The role of the central zinc fingers of transcription factor IIIA in binding to 5S RNA. J. Mol. Biol. 301, 47-60
    • (2000) J. Mol. Biol , vol.301 , pp. 47-60
    • Searles, M.A.1    Lu, D.2    Klug, A.3
  • 40
    • 0036931270 scopus 로고    scopus 로고
    • Zinc fingers: Folds for many occasions
    • Matthews, J. M. and Sunde, M. (2002) Zinc fingers: folds for many occasions. IUBMB Life 54, 351-355
    • (2002) IUBMB Life , vol.54 , pp. 351-355
    • Matthews, J.M.1    Sunde, M.2
  • 41
    • 1642298257 scopus 로고    scopus 로고
    • Mechanistic insights into the kinetics of HIV-1 nucleocapsid protein-facilitated tRNA annealing to the primer binding site
    • Hargittai, M. R., Gorelick, R. J., Rouzina, I. and Musier-Forsyth, K. (2004) Mechanistic insights into the kinetics of HIV-1 nucleocapsid protein-facilitated tRNA annealing to the primer binding site. J. Mol. Biol. 337, 951-968
    • (2004) J. Mol. Biol , vol.337 , pp. 951-968
    • Hargittai, M.R.1    Gorelick, R.J.2    Rouzina, I.3    Musier-Forsyth, K.4
  • 42
    • 33750016312 scopus 로고    scopus 로고
    • Rapid kinetics of protein-nucleic acid interation is a major component of HIV-1 nucleocapsid protein's nucelic acid chaperone function
    • Cruceanu, M., Gorelick, R. J., Musier-Forsyth, K., Rouzina, I. and Williams, M. C. (2006) Rapid kinetics of protein-nucleic acid interation is a major component of HIV-1 nucleocapsid protein's nucelic acid chaperone function. J. Mol. Biol. 363, 867-877
    • (2006) J. Mol. Biol , vol.363 , pp. 867-877
    • Cruceanu, M.1    Gorelick, R.J.2    Musier-Forsyth, K.3    Rouzina, I.4    Williams, M.C.5
  • 43
    • 33745317585 scopus 로고    scopus 로고
    • L1Tc non-LTR retrotransposons contain a functional viral self-cleaving 2A sequence in frame with the active proteins they encode
    • Heras R.S., Thomas M. C., García M., Felipe P., García-Pérez J.L., Ryan M. and López, M. C. (2006) L1Tc non-LTR retrotransposons contain a functional viral self-cleaving 2A sequence in frame with the active proteins they encode. Cell. Mol. Life Sci, 63, 1449-1160
    • (2006) Cell. Mol. Life Sci , vol.63 , pp. 1449-1160
    • Heras, R.S.1    Thomas, M.C.2    García, M.3    Felipe, P.4    García-Pérez, J.L.5    Ryan, M.6    López, M.C.7


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