-
1
-
-
0030803589
-
Self-cleaving ribozymes of hepatitis delta virus RNA
-
Been, M. D., and G. S. Wickham. 1997. Self-cleaving ribozymes of hepatitis delta virus RNA. Eur. J. Biochem. 247:741-753.
-
(1997)
Eur. J. Biochem.
, vol.247
, pp. 741-753
-
-
Been, M.D.1
Wickham, G.S.2
-
2
-
-
0032510519
-
Are retrotransposons long-term hitchhikers?
-
Burke, W. D., H. S. Malik, W. C. Lathe III, and T. H. Eickbush. 1998. Are retrotransposons long-term hitchhikers? Nature 392:141-142.
-
(1998)
Nature
, vol.392
, pp. 141-142
-
-
Burke, W.D.1
Malik, H.S.2
Lathe III, W.C.3
Eickbush, T.H.4
-
3
-
-
0003017978
-
Structure and mechanism of the large catalytic RNAs: Group I and group II introns and ribonuclease
-
R. F. Gesteland and J. F. Atkins (ed.), Cold Spring Harbor Laboratory Press, Plainview, NY
-
Cech, T. R. 1993. Structure and mechanism of the large catalytic RNAs: group I and group II introns and ribonuclease P, p. 239-269. In R. F. Gesteland and J. F. Atkins (ed.), The RNA world. Cold Spring Harbor Laboratory Press, Plainview, NY.
-
(1993)
The RNA World
, pp. 239-269
-
-
Cech, T.R.1
-
4
-
-
61749093844
-
A catalytic metal ion interacts with the cleavage site G.U wobble in the HDV ribozyme
-
Chen, J. H., B. Gong, P. C. Bevilacqua, P. R. Carey, and B. L. Golden. 2009. A catalytic metal ion interacts with the cleavage site G.U wobble in the HDV ribozyme. Biochemistry 48:1498-1507.
-
(2009)
Biochemistry
, vol.48
, pp. 1498-1507
-
-
Chen, J.H.1
Gong, B.2
Bevilacqua, P.C.3
Carey, P.R.4
Golden, B.L.5
-
5
-
-
33845200930
-
RNA from the 5′ end of the R2 retrotransposon controls R2 protein binding to and cleavage of its DNA target site
-
Christensen, S. M., J. Ye, and T. H. Eickbush. 2006. RNA from the 5′ end of the R2 retrotransposon controls R2 protein binding to and cleavage of its DNA target site. Proc. Natl. Acad. Sci. U. S. A. 103:17602-17607.
-
(2006)
Proc. Natl. Acad. Sci. U. S. A.
, vol.103
, pp. 17602-17607
-
-
Christensen, S.M.1
Ye, J.2
Eickbush, T.H.3
-
6
-
-
51649103765
-
Catalytic strategies of self-cleaving ribozymes
-
Cochrane, J. C., and S. A. Strobel. 2008. Catalytic strategies of self-cleaving ribozymes. Acc. Chem. Res. 41:1027-1035.
-
(2008)
Acc. Chem. Res.
, vol.41
, pp. 1027-1035
-
-
Cochrane, J.C.1
Strobel, S.A.2
-
7
-
-
0033559056
-
Analysis of the promoter from an expanding mouse retrotransposon subfamily
-
DOI 10.1006/geno.1998.5729
-
DeBerardinis, R. J., and H. H. Kazazian, Jr. 1999. Analysis of the promoter from an expanding mouse retrotransposon subfamily. Genomics 56:317-323. (Pubitemid 29159912)
-
(1999)
Genomics
, vol.56
, Issue.3
, pp. 317-323
-
-
Deberardinis, R.J.1
Kazazian Jr., H.H.2
-
8
-
-
53549088060
-
Epigenetic regulation of retrotransposons within the nucleolus of Drosophila
-
Eickbush, D. G., J. Ye, X. Zhang, W. D. Burke, and T. H. Eickbush. 2008. Epigenetic regulation of retrotransposons within the nucleolus of Drosophila. Mol. Cell. Biol. 28:6452-6461.
-
(2008)
Mol. Cell. Biol.
, vol.28
, pp. 6452-6461
-
-
Eickbush, D.G.1
Ye, J.2
Zhang, X.3
Burke, W.D.4
Eickbush, T.H.5
-
9
-
-
85158011569
-
R2 and Related site-specific non-long terminal repeat retrotransposons
-
N. L. Craig, R. Craigie, M. Gellert, and A. M. Lambowitz (ed.), ASM Press, Washington, DC
-
Eickbush, T. H. 2002. R2 and Related site-specific non-long terminal repeat retrotransposons, p. 813-835. In N. L. Craig, R. Craigie, M. Gellert, and A. M. Lambowitz (ed.), Mobile DNA II. ASM Press, Washington, DC.
-
(2002)
Mobile DNA II
, pp. 813-835
-
-
Eickbush, T.H.1
-
10
-
-
0032497521
-
Crystal structure of a hepatitis delta virus ribozyme
-
DOI 10.1038/26912
-
Ferré-D'Amaré, A. R., K. Zhou, and J. A. Doudna. 1998. Crystal structure of a hepatitis delta virus ribozyme. Nature 395:567-574. (Pubitemid 28475703)
-
(1998)
Nature
, vol.395
, Issue.6702
, pp. 567-574
-
-
Ferre-D'Amare, A.R.1
Zhou, K.2
Doudna, J.A.3
-
11
-
-
0025020445
-
A rapidly rearranging retrotransposon within the miniexon gene locus of Crithidia fasciculate
-
Gabriel, A., T. J. Yen, D. C. Schwartz, C. L. Smith, J. D. Boeke, B. Sollner-Webb, and D. W. Cleveland. 1990. A rapidly rearranging retrotransposon within the miniexon gene locus of Crithidia fasciculate. Mol. Cell. Biol. 10:615-624.
-
(1990)
Mol. Cell. Biol.
, vol.10
, pp. 615-624
-
-
Gabriel, A.1
Yen, T.J.2
Schwartz, D.C.3
Smith, C.L.4
Boeke, J.D.5
Sollner-Webb, B.6
Cleveland, D.W.7
-
12
-
-
0033081843
-
Conserved features at the 5′ end of Drosophila R2 retrotransposable elements: Implications for transcription and translation
-
George, J. A., and T. H. Eickbush. 1999. Conserved features at the 5′ end of Drosophila R2 retrotransposable elements: implications for transcription and translation. Insect Mol. Biol. 8:3-10.
-
(1999)
Insect Mol. Biol.
, vol.8
, pp. 3-10
-
-
George, J.A.1
Eickbush, T.H.2
-
13
-
-
46549086974
-
Viral IRES RNA structures and ribosome interactions
-
Kieft, J. S. 2008. Viral IRES RNA structures and ribosome interactions. Trends Biochem. Sci. 33:274-283.
-
(2008)
Trends Biochem. Sci.
, vol.33
, pp. 274-283
-
-
Kieft, J.S.1
-
14
-
-
67549143784
-
Secondary structures for 5′ regions of R2 retrotransposon RNAs reveal a novel conserved pseudoknot and regions that evolve under different constraints
-
Kierzek, E., S. M. Christensen, T. H. Eickbush, R. Kierzek, D. H. Turner, and W. N. Moss. 2009. Secondary structures for 5′ regions of R2 retrotransposon RNAs reveal a novel conserved pseudoknot and regions that evolve under different constraints. J. Mol. Biol. 390:428-432.
-
(2009)
J. Mol. Biol.
, vol.390
, pp. 428-432
-
-
Kierzek, E.1
Christensen, S.M.2
Eickbush, T.H.3
Kierzek, R.4
Turner, D.H.5
Moss, W.N.6
-
15
-
-
0037359032
-
Evolution of target specificity in the R1 clade non-LTR retrotransposons
-
Kojima, K. K., and H. Fujiwara. 2003. Evolution of target specificity in the R1 clade non-LTR retrotransposons. Mol. Biol. Evol. 20:351-361.
-
(2003)
Mol. Biol. Evol.
, vol.20
, pp. 351-361
-
-
Kojima, K.K.1
Fujiwara, H.2
-
16
-
-
26444555977
-
Long-term inheritance of the 28S rDNA-specific retrotransposon R2
-
Kojima, K. K., and H. Fujiwara. 2005. Long-term inheritance of the 28S rDNA-specific retrotransposon R2. Mol. Biol. Evol. 22:2157-2165.
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 2157-2165
-
-
Kojima, K.K.1
Fujiwara, H.2
-
17
-
-
33748803914
-
Identification of rDNA-specific non-LTR retrotransposons in Cnidaria
-
Kojima, K. K., K. Kuma, H. Toh, and H. Fujiwara. 2006. Identification of rDNA-specific non-LTR retrotransposons in Cnidaria. Mol. Biol. Evol. 23: 1984-1993.
-
(2006)
Mol. Biol. Evol.
, vol.23
, pp. 1984-1993
-
-
Kojima, K.K.1
Kuma, K.2
Toh, H.3
Fujiwara, H.4
-
18
-
-
0020417286
-
Self-spicing RNA: Autoexcision and autocyclization of the ribosomal RNA intervening sequence of Tetrahymena
-
Kruger, K., P. J. Grabowski, A. J. Zaug, J. Sands, D. E. Gottschling, and T. R. Cech. 1982. Self-spicing RNA: autoexcision and autocyclization of the ribosomal RNA intervening sequence of Tetrahymena. Cell 31:147-157.
-
(1982)
Cell
, vol.31
, pp. 147-157
-
-
Kruger, K.1
Grabowski, P.J.2
Zaug, A.J.3
Sands, J.4
Gottschling, D.E.5
Cech, T.R.6
-
20
-
-
0030782396
-
A single lineage of R2 retrotransposable elements is an active, evolutionarily stable component of the Drosophila rDNA locus
-
Lathe III, W. C., and T. H. Eickbush. 1997. A single lineage of R2 retrotransposable elements is an active, evolutionarily stable component of the Drosophila rDNA locus. Mol. Biol. Evol. 14:1232-1241.
-
(1997)
Mol. Biol. Evol.
, vol.14
, pp. 1232-1241
-
-
Lathe III, W.C.1
Eickbush, T.H.2
-
21
-
-
0019332489
-
Alternative pathways in the processing of ribosomal RNA precursor in Drosophila melanogaster
-
Long, E. O., and I. B. Dawid. 1980. Alternative pathways in the processing of ribosomal RNA precursor in Drosophila melanogaster. J. Mol. Biol. 138:873-878.
-
(1980)
J. Mol. Biol.
, vol.138
, pp. 873-878
-
-
Long, E.O.1
Dawid, I.B.2
-
22
-
-
0029058441
-
RNA template requirements for target DNA-primed reverse transcription by the R2 retrotransposable element
-
Luan, D. D., and T. H. Eickbush. 1995. RNA template requirements for target DNA-primed reverse transcription by the R2 retrotransposable element. Mol. Cell. Biol. 15:3882-3891.
-
(1995)
Mol. Cell. Biol.
, vol.15
, pp. 3882-3891
-
-
Luan, D.D.1
Eickbush, T.H.2
-
23
-
-
0027450385
-
Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: A mechanism for non-LTR retrotransposition
-
Luan, D. D., M. H. Korman, J. L. Jakubczak, and T. H. Eickbush. 1993. Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: a mechanism for non-LTR retrotransposition. Cell 72:595-605.
-
(1993)
Cell
, vol.72
, pp. 595-605
-
-
Luan, D.D.1
Korman, M.H.2
Jakubczak, J.L.3
Eickbush, T.H.4
-
24
-
-
0033966338
-
NeSL-1, an ancient lineage of site-specific non-LTR retrotransposons from Caenorhabditis elegans
-
Malik, H. S., and T. H. Eickbush. 2000. NeSL-1, an ancient lineage of site-specific non-LTR retrotransposons from Caenorhabditis elegans. Genetics 154:193-203.
-
(2000)
Genetics
, vol.154
, pp. 193-203
-
-
Malik, H.S.1
Eickbush, T.H.2
-
25
-
-
0027525870
-
The 5′ untranslated region of the I factor, a long interspersed element-like retrotransposon of Drosophila melanogaster, contains an internal promoter and sequences that regulate expression
-
McLean, C., A. Bucheton, and D. J. Finnegan. 1993. The 5′ untranslated region of the I factor, a long interspersed element-like retrotransposon of Drosophila melanogaster, contains an internal promoter and sequences that regulate expression. Mol. Cell. Biol. 13:1042-1050.
-
(1993)
Mol. Cell. Biol.
, vol.13
, pp. 1042-1050
-
-
McLean, C.1
Bucheton, A.2
Finnegan, D.J.3
-
26
-
-
0024297806
-
Jockey, a mobile Drosophila element similar to mammalian LINEs, is transcribed from the internal promoter by RNA polymerase II
-
Mizrokhi, L. J., S. G. Gorgieva, and Y. V. Ilyin. 1988. Jockey, a mobile Drosophila element similar to mammalian LINEs, is transcribed from the internal promoter by RNA polymerase II. Cell 54:685-691.
-
(1988)
Cell
, vol.54
, pp. 685-691
-
-
Mizrokhi, L.J.1
Gorgieva, S.G.2
Ilyin, Y.V.3
-
27
-
-
0024966071
-
A mobile group I intron in the nuclear rDNA of Physarum polycephalum
-
Muscarella, D. E., and V. M. Vogt. 1989. A mobile group I intron in the nuclear rDNA of Physarum polycephalum. Cell 56:443-454.
-
(1989)
Cell
, vol.56
, pp. 443-454
-
-
Muscarella, D.E.1
Vogt, V.M.2
-
28
-
-
32644448356
-
Unbiased in vitro selection reveals the unique character of the self-cleaving antigenomic HDV RNA sequence
-
DOI 10.1093/nar/gkj463
-
Nehdi, A., and J.-P. Perreault. 2006. Unbiased in vitro selection reveals the unique character of the self-cleaving antigenomic HDV RNA sequence. Nucleic Acids Res. 34:584-592. (Pubitemid 43240246)
-
(2006)
Nucleic Acids Research
, vol.34
, Issue.2
, pp. 584-592
-
-
Nehdi, A.1
Perreault, J.-P.2
-
29
-
-
0028088986
-
Marked infidelity of human immunodeficiency virus type 1 reverse transcriptase at RNA and DNA template ends
-
Patel, P. H., and B. D. Preston. 1994. Marked infidelity of human immunodeficiency virus type 1 reverse transcriptase at RNA and DNA template ends. Proc. Natl. Acad. Sci. U. S. A. 91:549-553.
-
(1994)
Proc. Natl. Acad. Sci. U. S. A.
, vol.91
, pp. 549-553
-
-
Patel, P.H.1
Preston, B.D.2
-
30
-
-
0029964591
-
Core sequences and a cleavage site wobble pair required for HDV antigenomic ribozyme self-cleavage
-
Perrotta, A. T., and M. D. Been. 1996. Core sequences and a cleavage site wobble pair required for HDV antigenomic ribozyme self-cleavage. Nucleic Acids Res. 24:1314-1321.
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 1314-1321
-
-
Perrotta, A.T.1
Been, M.D.2
-
31
-
-
33749016245
-
HDV ribozyme activity in monovalent cations
-
Perrotta, A. T., and M. D. Been. 2006. HDV ribozyme activity in monovalent cations. Biochemistry 45:11357-11365.
-
(2006)
Biochemistry
, vol.45
, pp. 11357-11365
-
-
Perrotta, A.T.1
Been, M.D.2
-
32
-
-
2442653969
-
Secondary Structure models of the 3′ untranslated regions of diverse R2 RNAs
-
Ruschak, A. M., D. H. Mathews, A. Bibillo, S. L. Spinelli, J. L. Childs, T. H. Eickbush, and D. H. Turner. 2004. Secondary Structure models of the 3′ untranslated regions of diverse R2 RNAs. RNA 10:978-987.
-
(2004)
RNA
, vol.10
, pp. 978-987
-
-
Ruschak, A.M.1
Mathews, D.H.2
Bibillo, A.3
Spinelli, S.L.4
Childs, J.L.5
Eickbush, T.H.6
Turner, D.H.7
-
33
-
-
33749034196
-
A genomewide search for ribozymes reveals an HDV-like sequence in the human CPEB3 gene
-
DOI 10.1126/science.1129308
-
Salehi-Ashtiani, K., A. Lupták, A. Litovchick, and J. W. Szostak. 2006. A genomewide search for ribozymes reveals an HDV-like sequence in the human CPEB3 gene. Science 313:1788-1792. (Pubitemid 44454155)
-
(2006)
Science
, vol.313
, Issue.5794
, pp. 1788-1792
-
-
Salehi-Ashtiani, K.1
Luptak, A.2
Litovchick, A.3
Szostak, J.W.4
-
34
-
-
66149168701
-
Origin of nascent lineages and the mechanisms used to prime second-strand DNA synthesis in the R1 and R2 retrotransposons of Drosophila
-
Stage, D. E., and T. H. Eickbush. 2009. Origin of nascent lineages and the mechanisms used to prime second-strand DNA synthesis in the R1 and R2 retrotransposons of Drosophila. Genome Biol. 10:R49.
-
(2009)
Genome Biol.
, vol.10
-
-
Stage, D.E.1
Eickbush, T.H.2
-
35
-
-
0025223152
-
Identification, characterization, and cell specificity of a human LINE-1 promoter
-
Swergold, G. D. 1990. Identification, characterization, and cell specificity of a human LINE-1 promoter. Mol. Cell. Biol. 10:6718-6729.
-
(1990)
Mol. Cell. Biol.
, vol.10
, pp. 6718-6729
-
-
Swergold, G.D.1
-
36
-
-
0025933050
-
A new member of a family of site-specific retrotransposons is present in the spliced leader RNA genes of Trypanosoma cruzi
-
Villanueva, M. S., S. P. Williams, C. B. Beard, F. F. Richards, and S. Aksoy. 1991. A new member of a family of site-specific retrotransposons is present in the spliced leader RNA genes of Trypanosoma cruzi. Mol. Cell. Biol. 11:6139-6148.
-
(1991)
Mol. Cell. Biol.
, vol.11
, pp. 6139-6148
-
-
Villanueva, M.S.1
Williams, S.P.2
Beard, C.B.3
Richards, F.F.4
Aksoy, S.5
-
37
-
-
72449145407
-
Widespread occurrence of self-cleaving ribozymes
-
Webb, C.-H., N. J. Riccitelli, D. J. Ruminski, and A. Lupták. 2009. Widespread occurrence of self-cleaving ribozymes. Science 326:953.
-
(2009)
Science
, vol.326
, pp. 953
-
-
Webb, C.-H.1
Riccitelli, N.J.2
Ruminski, D.J.3
Lupták, A.4
-
38
-
-
33845230586
-
Chromatin structure and transcription of the R1- and R2-inserted rRNA genes of Drosophila melanogaster
-
Ye, J., and T. H. Eickbush. 2006. Chromatin structure and transcription of the R1- and R2-inserted rRNA genes of Drosophila melanogaster. Mol. Cell. Biol. 26:8781-8790.
-
(2006)
Mol. Cell. Biol.
, vol.26
, pp. 8781-8790
-
-
Ye, J.1
Eickbush, T.H.2
-
39
-
-
20444410099
-
Characterization of active R2 retrotransposition in the rDNA locus of Drosophila simulans
-
Zhang, X., and T. H. Eickbush. 2005. Characterization of active R2 retrotransposition in the rDNA locus of Drosophila simulans. Genetics 170:195-205.
-
(2005)
Genetics
, vol.170
, pp. 195-205
-
-
Zhang, X.1
Eickbush, T.H.2
-
40
-
-
61449167094
-
The pattern of R2 retrotransposon activity in natural populations of Drosophila simulans reflects the dynamic nature of the rDNA locus
-
Zhou, J., and T. H. Eickbush. 2009. The pattern of R2 retrotransposon activity in natural populations of Drosophila simulans reflects the dynamic nature of the rDNA locus. PLoS Genet. 5:e1000386.
-
(2009)
PLoS Genet.
, vol.5
-
-
Zhou, J.1
Eickbush, T.H.2
|