-
1
-
-
77955656071
-
The membrane environment modulates self-association of the human GpA TM domain-Implications for membrane protein folding and transmembrane signaling
-
V. Anbazhagan, and D. Schneider The membrane environment modulates self-association of the human GpA TM domain-Implications for membrane protein folding and transmembrane signaling Biochim. Biophys. Acta Biomembranes 1798 2010 1899 1907
-
(2010)
Biochim. Biophys. Acta Biomembranes
, vol.1798
, pp. 1899-1907
-
-
Anbazhagan, V.1
Schneider, D.2
-
2
-
-
70450222316
-
The structure of an integrin/talin complex reveals the basis of inside-out signal transduction
-
N.J. Anthis, K.L. Wegener, F. Ye, C. Kim, B.T. Goult, E.D. Lowe, I. Vakonakis, N. Bate, D.R. Critchley, M.H. Ginsberg, and I.D. Campbell The structure of an integrin/talin complex reveals the basis of inside-out signal transduction EMBO J. 28 2009 3623 3632
-
(2009)
EMBO J.
, vol.28
, pp. 3623-3632
-
-
Anthis, N.J.1
Wegener, K.L.2
Ye, F.3
Kim, C.4
Goult, B.T.5
Lowe, E.D.6
Vakonakis, I.7
Bate, N.8
Critchley, D.R.9
Ginsberg, M.H.10
Campbell, I.D.11
-
3
-
-
33750587438
-
Molecular dynamics with coupling to an external bath
-
H.J.C. Berendsen, J.P.M. Postma, W.F. van Gunsteren, A. DiNola, and J.R. Haak Molecular dynamics with coupling to an external bath J. Chem. Phys. 81 1984 3684 3690
-
(1984)
J. Chem. Phys.
, vol.81
, pp. 3684-3690
-
-
Berendsen, H.J.C.1
Postma, J.P.M.2
Van Gunsteren, W.F.3
Dinola, A.4
Haak, J.R.5
-
4
-
-
76249120625
-
Consensus motif for integrin transmembrane helix association
-
B.W. Berger, D.W. Kulp, L.M. Span, J.L. DeGrado, P.C. Billings, A. Senes, J.S. Bennett, and W.F. DeGrado Consensus motif for integrin transmembrane helix association Proc. Natl. Acad. Sci. USA 107 2010 703 708
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 703-708
-
-
Berger, B.W.1
Kulp, D.W.2
Span, L.M.3
Degrado, J.L.4
Billings, P.C.5
Senes, A.6
Bennett, J.S.7
Degrado, W.F.8
-
5
-
-
77749318504
-
Left-handed dimer of EphA2 transmembrane domain: Helix packing diversity among receptor tyrosine kinases
-
E.V. Bocharov, M.L. Mayzel, P.E. Volynsky, K.S. Mineev, E.N. Tkach, Y.S. Ermolyuk, A.A. Schulga, R.G. Efremov, and A.S. Arseniev Left-handed dimer of EphA2 transmembrane domain: Helix packing diversity among receptor tyrosine kinases Biophys. J. 98 2010 881 889
-
(2010)
Biophys. J.
, vol.98
, pp. 881-889
-
-
Bocharov, E.V.1
Mayzel, M.L.2
Volynsky, P.E.3
Mineev, K.S.4
Tkach, E.N.5
Ermolyuk, Y.S.6
Schulga, A.A.7
Efremov, R.G.8
Arseniev, A.S.9
-
6
-
-
53249150686
-
Coarse-grained molecular dynamics simulations of the energetics of helix insertion into a lipid bilayer
-
P.J. Bond, C.L. Wee, and M.S.P. Sansom Coarse-grained molecular dynamics simulations of the energetics of helix insertion into a lipid bilayer Biochemistry 47 2008 11321 11331
-
(2008)
Biochemistry
, vol.47
, pp. 11321-11331
-
-
Bond, P.J.1
Wee, C.L.2
Sansom, M.S.P.3
-
7
-
-
28444488355
-
Solving the membrane protein folding problem
-
DOI 10.1038/nature04395
-
J.U. Bowie Solving the membrane protein folding problem Nature 438 2005 581 589 (Pubitemid 41740561)
-
(2005)
Nature
, vol.438
, Issue.7068
, pp. 581-589
-
-
Bowie, J.U.1
-
8
-
-
4143150532
-
Molecular dynamics simulations of micelle formation around dimeric glycophorin A transmembrane helices
-
DOI 10.1529/biophysj.104.040279
-
R. Braun, D.M. Engelman, and K. Schulten Molecular dynamics simulations of micelle formation around dimeric Glycophorin A transmembrane helices Biophys. J. 87 2004 754 763 (Pubitemid 39095058)
-
(2004)
Biophysical Journal
, vol.87
, Issue.2
, pp. 754-763
-
-
Braun, R.1
Engelman, D.M.2
Schulten, K.3
-
9
-
-
0031956790
-
The dimerization motif of the glycophorin A transmembrane segment in membranes: Importance of glycine residues
-
B. Brosig, and D. Langosch The dimerization motif of the glycophorin A transmembrane segment in membranes: importance of glycine residues Protein Sci. 7 1998 1052 1056 (Pubitemid 28216547)
-
(1998)
Protein Science
, vol.7
, Issue.4
, pp. 1052-1056
-
-
Brosig, B.1
Langosch, D.2
-
10
-
-
79958706179
-
Leukocyte integrin αlβ2 transmembrane association dynamics revealed by coarse-grained molecular dynamics simulations
-
C.-P. Chng, and S.-M. Tan Leukocyte integrin αLβ2 transmembrane association dynamics revealed by coarse-grained molecular dynamics simulations Proteins 79 2011 2203 2213
-
(2011)
Proteins
, vol.79
, pp. 2203-2213
-
-
Chng, C.-P.1
Tan, S.-M.2
-
11
-
-
34250810824
-
Method to assess packing quality of transmembrane α-helices in proteins. 2. Validation by 'correct vs misleading' test
-
DOI 10.1021/ci600517c
-
A.O. Chugunov, V.N. Novoseletsky, D.E. Nolde, A.S. Arseniev, and R.G. Efremov Method to assess packing quality of transmembrane α-helices in proteins. 1. Parametrization using structural data J. Chem. Inf. Model. 47 2007 1163 1170 (Pubitemid 46973729)
-
(2007)
Journal of Chemical Information and Modeling
, vol.47
, Issue.3
, pp. 1163-1170
-
-
Chugunov, A.O.1
Novoseletsky, V.N.2
Nolde, D.E.3
Arseniev, A.S.4
Efremov, R.G.5
-
12
-
-
79551597049
-
Influence of solubilizing environments on membrane protein structures
-
T.A. Cross, M. Sharma, M. Yi, and H.X. Zhou Influence of solubilizing environments on membrane protein structures Trends Biochem. Sci. 36 2011 117 125
-
(2011)
Trends Biochem. Sci.
, vol.36
, pp. 117-125
-
-
Cross, T.A.1
Sharma, M.2
Yi, M.3
Zhou, H.X.4
-
13
-
-
0042931286
-
Sequence motifs, polar interactions and conformational changes in helical membrane proteins
-
DOI 10.1016/S0959-440X(03)00102-7
-
A.R. Curran, and D.M. Engelman Sequence motifs, polar interactions and conformational changes in helical membrane proteins Curr. Opin. Struct. Biol. 13 2003 412 417 (Pubitemid 37011445)
-
(2003)
Current Opinion in Structural Biology
, vol.13
, Issue.4
, pp. 412-417
-
-
Curran, A.R.1
Engelman, D.M.2
-
14
-
-
33845316118
-
Transmembrane helix-helix interactions: Comparative simulations of the glycophorin A dimer
-
DOI 10.1021/bi0610911
-
J.M. Cuthbertson, P.J. Bond, and M.S.P. Sansom Transmembrane helix-helix interactions: comparative simulations of the glycophorin a dimer Biochemistry 45 2006 14298 14310 (Pubitemid 44868122)
-
(2006)
Biochemistry
, vol.45
, Issue.48
, pp. 14298-14310
-
-
Cuthbertson, J.M.1
Bond, P.J.2
Sansom, M.S.P.3
-
15
-
-
38049174634
-
Transmembrane domains of the syndecan family of growth factor coreceptors display a hierarchy of homotypic and heterotypic interactions
-
I.C. Dews, and K.R. Mackenzie Transmembrane domains of the syndecan family of growth factor coreceptors display a hierarchy of homotypic and heterotypic interactions Proc. Natl. Acad. Sci. USA 104 2007 20782 20787
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 20782-20787
-
-
Dews, I.C.1
MacKenzie, K.R.2
-
16
-
-
6344236852
-
Complex interactions at the helix-helix interface stabilize the glycophorin A transmembrane dimer
-
DOI 10.1016/j.jmb.2004.09.011, PII S0022283604011398
-
A.K. Doura, and K.G. Fleming Complex interactions at the helix-helix interface stabilize the glycophorin A transmembrane dimer J. Mol. Biol. 343 2004 1487 1497 (Pubitemid 39387839)
-
(2004)
Journal of Molecular Biology
, vol.343
, Issue.5
, pp. 1487-1497
-
-
Doura, A.K.1
Fleming, K.G.2
-
17
-
-
3843102625
-
Sequence context modulates the stability of a GxxxG-mediated transmembrane helix-helix dimer
-
DOI 10.1016/j.jmb.2004.06.042, PII S002228360400734X
-
A.K. Doura, F.J. Kobus, L. Dubrovsky, E. Hibbard, and K.G. Fleming Sequence context modulates the stability of a GxxxG-mediated transmembrane helix-helix dimer J. Mol. Biol. 341 2004 991 998 (Pubitemid 39037359)
-
(2004)
Journal of Molecular Biology
, vol.341
, Issue.4
, pp. 991-998
-
-
Doura, A.K.1
Kobus, F.J.2
Dubrovsky, L.3
Hibbard, E.4
Fleming, K.G.5
-
18
-
-
73349087177
-
The single transmembrane domain of human tyrosine kinases encode self interactions
-
C. Finger, C. Escher, and D. Schneider The single transmembrane domain of human tyrosine kinases encode self interactions Sci. Signal. 2 ra56 2009 51 58
-
(2009)
Sci. Signal.
, vol.2
, Issue.RA56
, pp. 51-58
-
-
Finger, C.1
Escher, C.2
Schneider, D.3
-
20
-
-
18944403970
-
A coiled-coil structure of the alphaIIbbeta3 integrin transmembrane and cytoplasmic domains in its resting state
-
K.E. Gottschalk A coiled-coil structure of the alphaIIbbeta3 integrin transmembrane and cytoplasmic domains in its resting state Structure 13 2005 703 712
-
(2005)
Structure
, vol.13
, pp. 703-712
-
-
Gottschalk, K.E.1
-
21
-
-
1642573163
-
Evidence for hetero-association of transmembrane helices of integrins
-
DOI 10.1016/S0014-5793(03)01443-1
-
K.E. Gottschalk, and H. Kessler Evidence for hetero-association of transmembrane helices of integrins FEBS Lett. 557 2004 253 258 (Pubitemid 38115905)
-
(2004)
FEBS Letters
, vol.557
, Issue.1-3
, pp. 253-258
-
-
Gottschalk, K.-E.1
Kessler, H.2
-
22
-
-
79959696225
-
Exploring peptide-membrane interactions with coarse-grained MD simulations
-
B.A. Hall, A.P. Chetwynd, and M.S.P. Sansom Exploring peptide-membrane interactions with coarse-grained MD simulations Biophys. J. 100 2011 1940 1948
-
(2011)
Biophys. J.
, vol.100
, pp. 1940-1948
-
-
Hall, B.A.1
Chetwynd, A.P.2
Sansom, M.S.P.3
-
24
-
-
0000388705
-
LINCS: A Linear Constraint Solver for molecular simulations
-
B. Hess, H. Bekker, H.J.C. Berendsen, and J.G.E.M. Fraaije LINCS: A linear constraint solver for molecular simulations J. Comput. Chem. 18 1997 1463 1472 (Pubitemid 127637344)
-
(1997)
Journal of Computational Chemistry
, vol.18
, Issue.12
, pp. 1463-1472
-
-
Hess, B.1
Bekker, H.2
Berendsen, H.J.C.3
Fraaije, J.G.E.M.4
-
26
-
-
0037145037
-
Integrins: Bidirectional, allosteric signaling machines
-
DOI 10.1016/S0092-8674(02)00971-6
-
R.O. Hynes Integrins: bidirectional, allosteric signaling machines Cell 110 2002 673 687 (Pubitemid 35283958)
-
(2002)
Cell
, vol.110
, Issue.6
, pp. 673-687
-
-
Hynes, R.O.1
-
27
-
-
77954354757
-
Lipid-modulated sequence-specific association of glycophorin A in membranes
-
L. Janosi, A. Prakash, and M. Doxastakis Lipid-modulated sequence-specific association of glycophorin A in membranes Biophys. J. 99 2010 284 292
-
(2010)
Biophys. J.
, vol.99
, pp. 284-292
-
-
Janosi, L.1
Prakash, A.2
Doxastakis, M.3
-
28
-
-
0032817780
-
Helix packing in polytopic membrane proteins: Role of glycine in transmembrane helix association
-
M.M. Javadpour, M. Eilers, M. Groesbeek, and S.O. Smith Helix packing in polytopic membrane proteins: role of glycine in transmembrane helix association Biophys. J. 77 1999 1609 1618 (Pubitemid 29407334)
-
(1999)
Biophysical Journal
, vol.77
, Issue.3
, pp. 1609-1618
-
-
Javadpour, M.M.1
Eilers, M.2
Groesbeek, M.3
Smith, S.O.4
-
29
-
-
67549145398
-
Mechanism for activation of the EGF receptor catalytic domain by the juxtamembrane segment
-
N. Jura, N.F. Endres, K. Engel, S. Deindl, R. Das, M.H. Lamers, D.E. Wemmer, X.W. Zhang, and J. Kuriyan Mechanism for activation of the EGF receptor catalytic domain by the juxtamembrane segment Cell 137 2009 1293 1307
-
(2009)
Cell
, vol.137
, pp. 1293-1307
-
-
Jura, N.1
Endres, N.F.2
Engel, K.3
Deindl, S.4
Das, R.5
Lamers, M.H.6
Wemmer, D.E.7
Zhang, X.W.8
Kuriyan, J.9
-
30
-
-
79961038713
-
Multiscale simulations suggest a mechanism for integrin inside-out activation
-
A.C. Kalli, I.D. Campbell, and M.S.P. Sansom Multiscale simulations suggest a mechanism for integrin inside-out activation Proc. Natl. Acad. Sci. USA 108 2011 11890 11895
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 11890-11895
-
-
Kalli, A.C.1
Campbell, I.D.2
Sansom, M.S.P.3
-
31
-
-
64649084606
-
Molecular dynamics simulations of membrane channels and transporters
-
F. Khalili-Araghi, J. Gumbart, P.C. Wen, M. Sotomayor, E. Tajkhorshid, and K. Schulten Molecular dynamics simulations of membrane channels and transporters Curr. Opin. Struct. Biol. 19 2009 128 137
-
(2009)
Curr. Opin. Struct. Biol.
, vol.19
, pp. 128-137
-
-
Khalili-Araghi, F.1
Gumbart, J.2
Wen, P.C.3
Sotomayor, M.4
Tajkhorshid, E.5
Schulten, K.6
-
32
-
-
67650069254
-
Interaction and conformational dynamics of membrane-spanning protein helices
-
D. Langosch, and I.T. Arkin Interaction and conformational dynamics of membrane-spanning protein helices Protein Sci. 18 2009 1343 1358
-
(2009)
Protein Sci.
, vol.18
, pp. 1343-1358
-
-
Langosch, D.1
Arkin, I.T.2
-
33
-
-
65649127175
-
The structure of the integrin alphaIIbbeta3 transmembrane complex explains integrin transmembrane signalling
-
T.-L. Lau, C. Kim, M.H. Ginsberg, and T.S. Ulmer The structure of the integrin alphaIIbbeta3 transmembrane complex explains integrin transmembrane signalling EMBO J. 28 2009 1351 1361
-
(2009)
EMBO J.
, vol.28
, pp. 1351-1361
-
-
Lau, T.-L.1
Kim, C.2
Ginsberg, M.H.3
Ulmer, T.S.4
-
34
-
-
25444504813
-
Membrane protein structure quality in molecular dynamics simulation
-
DOI 10.1016/j.jmgm.2005.05.006, PII S1093326305000495
-
R.J. Law, C. Capener, M. Baaden, P.J. Bond, J. Campbell, G. Patargias, Y. Arinaminpathy, and M.S.P. Sansom Membrane protein structure quality in molecular dynamics simulation J. Mol. Graph. Model. 24 2005 157 165 (Pubitemid 41377115)
-
(2005)
Journal of Molecular Graphics and Modelling
, vol.24
, Issue.2
, pp. 157-165
-
-
Law, R.J.1
Capener, C.2
Baaden, M.3
Bond, P.J.4
Campbell, J.5
Patargias, G.6
Arinaminpathy, Y.7
Sansom, M.S.P.8
-
35
-
-
33646889068
-
Role of receptor tyrosine kinase transmembrane domains in cell signaling and human pathologies
-
DOI 10.1021/bi060609y
-
E. Li, and K. Hristova Role of receptor tyrosine kinase transmembrane domains in cell signaling and human pathologies Biochemistry 45 2006 6241 6251 (Pubitemid 43787791)
-
(2006)
Biochemistry
, vol.45
, Issue.20
, pp. 6241-6251
-
-
Li, E.1
Hristova, K.2
-
36
-
-
2942700100
-
IIb subunit in cell membranes
-
DOI 10.1074/jbc.M314168200
-
R.H. Li, R. Gorelik, V. Nanda, P.B. Law, J.D. Lear, W.F. DeGrado, and J.S. Bennett Dimerization of the transmembrane domain of Integrin alphaIIb subunit in cell membranes J. Biol. Chem. 279 2004 26666 26673 (Pubitemid 38798824)
-
(2004)
Journal of Biological Chemistry
, vol.279
, Issue.25
, pp. 26666-26673
-
-
Li, R.1
Gorelik, R.2
Nanda, V.3
Law, P.B.4
Lear, J.D.5
DeGrado, W.F.6
Bennett, J.S.7
-
37
-
-
13444291852
-
A push-pull mechanism for regulating integrin function
-
DOI 10.1073/pnas.0409334102
-
W. Li, D.G. Metcalf, R. Gorelik, R. Li, N. Mitra, V. Nanda, P.B. Law, J.D. Lear, W.F. Degrado, and J.S. Bennett A push-pull mechanism for regulating integrin function Proc. Natl. Acad. Sci. USA 102 2005 1424 1429 (Pubitemid 40209186)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.5
, pp. 1424-1429
-
-
Li, W.1
Metcalf, D.G.2
Gorelik, R.3
Li, R.4
Mitra, N.5
Nanda, V.6
Law, P.B.7
Lear, J.D.8
DeGrado, W.F.9
Bennett, J.S.10
-
38
-
-
49549083949
-
Membrane proteins: Molecular dynamics simulations
-
E. Lindahl, and M.S.P. Sansom Membrane proteins: molecular dynamics simulations Curr. Opin. Struct. Biol. 18 2008 425 431
-
(2008)
Curr. Opin. Struct. Biol.
, vol.18
, pp. 425-431
-
-
Lindahl, E.1
Sansom, M.S.P.2
-
39
-
-
0035789518
-
GROMACS 3.0: A package for molecular simulation and trajectory analysis
-
DOI 10.1007/S008940100045
-
E. Lindahl, B. Hess, and D. van der Spoel GROMACS 3.0: a package for molecular simulation and trajectory analysis J. Mol. Model. 7 2001 306 317 (Pubitemid 36153547)
-
(2001)
Journal of Molecular Modeling
, vol.7
, Issue.8
, pp. 306-317
-
-
Lindahl, E.1
Hess, B.2
Van Der Spoel, D.3
-
40
-
-
16644396938
-
A specific interface between integrin transmembrane helices and affinity for ligand
-
B.-H. Luo, T.A. Springer, and J. Takagi A specific interface between integrin transmembrane helices and affinity for ligand PLoS Biol. 2 2004 e153
-
(2004)
PLoS Biol.
, vol.2
, pp. 153
-
-
Luo, B.-H.1
Springer, T.A.2
Takagi, J.3
-
41
-
-
14844346910
-
Disrupting integrin transmembrane domain heterodimerization increases ligand binding affinity, not valency or clustering
-
DOI 10.1073/pnas.0409440102
-
B.-H. Luo, C.V. Carman, J. Takagi, and T.A. Springer Disrupting integrin transmembrane domain heterodimerization increases ligand binding affinity, not valency or clustering Proc. Natl. Acad. Sci. USA 102 2005 3679 3684 (Pubitemid 40354671)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.10
, pp. 3679-3684
-
-
Luo, B.-H.1
Carman, C.V.2
Takagi, J.3
Springer, T.A.4
-
42
-
-
0030932407
-
Transmembrane helix dimer: Structure and implications
-
DOI 10.1126/science.276.5309.131
-
K.R. MacKenzie, J.H. Prestegard, and D.M. Engelman A transmembrane helix dimer: structure and implications Science 276 1997 131 133 (Pubitemid 27161261)
-
(1997)
Science
, vol.276
, Issue.5309
, pp. 131-133
-
-
MacKenzie, K.R.1
Prestegard, J.H.2
Engelman, D.M.3
-
44
-
-
69749117731
-
Multiple approaches converge on the structure of the integrin alphaIIb/β3 transmembrane heterodimer
-
D.G. Metcalf, D.W. Kulp, J.S. Bennett, and W.F. DeGrado Multiple approaches converge on the structure of the integrin alphaIIb/β3 transmembrane heterodimer J. Mol. Biol. 392 2009 1087 1101
-
(2009)
J. Mol. Biol.
, vol.392
, pp. 1087-1101
-
-
Metcalf, D.G.1
Kulp, D.W.2
Bennett, J.S.3
Degrado, W.F.4
-
45
-
-
49449113010
-
The MARTINI coarse grained force field: Extension to proteins
-
L. Monticelli, S.K. Kandasamy, X. Periole, R.G. Larson, D.P. Tieleman, and S.J. Marrink The MARTINI coarse grained force field: extension to proteins J. Chem. Theory Comput. 4 2008 819 834
-
(2008)
J. Chem. Theory Comput.
, vol.4
, pp. 819-834
-
-
Monticelli, L.1
Kandasamy, S.K.2
Periole, X.3
Larson, R.G.4
Tieleman, D.P.5
Marrink, S.J.6
-
46
-
-
0034703270
-
Modulation of glycophorin A transmembrane helix interactions by lipid bilayers: Molecular dynamics calculations
-
H.I. Petrache, A. Grossfield, K.R. MacKenzie, D.M. Engelman, and T.B. Woolf Modulation of glycophorin A transmembrane helix interactions by lipid bilayers: molecular dynamics calculations J. Mol. Biol. 302 2000 727 746
-
(2000)
J. Mol. Biol.
, vol.302
, pp. 727-746
-
-
Petrache, H.I.1
Grossfield, A.2
MacKenzie, K.R.3
Engelman, D.M.4
Woolf, T.B.5
-
47
-
-
0033790343
-
Helical membrane protein folding, stability, and evolution
-
J.L. Popot, and D.M. Engelman Helical membrane protein folding, stability, and evolution Annu. Rev. Biochem. 69 2000 881 922
-
(2000)
Annu. Rev. Biochem.
, vol.69
, pp. 881-922
-
-
Popot, J.L.1
Engelman, D.M.2
-
48
-
-
53249119350
-
Helix-helix interactions in membrane proteins: Coarse-grained simulations of glycophorin a helix dimerization
-
E. Psachoulia, P.W. Fowler, P.J. Bond, and M.S.P. Sansom Helix-helix interactions in membrane proteins: coarse-grained simulations of glycophorin a helix dimerization Biochemistry 47 2008 10503 10512
-
(2008)
Biochemistry
, vol.47
, pp. 10503-10512
-
-
Psachoulia, E.1
Fowler, P.W.2
Bond, P.J.3
Sansom, M.S.P.4
-
49
-
-
77949509024
-
Molecular dynamics simulations of the dimerization of transmembrane α-helices
-
E. Psachoulia, D.P. Marshall, and M.S.P. Sansom Molecular dynamics simulations of the dimerization of transmembrane α-helices Acc. Chem. Res. 43 2010 388 396
-
(2010)
Acc. Chem. Res.
, vol.43
, pp. 388-396
-
-
Psachoulia, E.1
Marshall, D.P.2
Sansom, M.S.P.3
-
52
-
-
0034711953
-
The GxxxG motif: A framework for transmembrane helix-helix association
-
W.P. Russ, and D.M. Engelman The GxxxG motif: a framework for transmembrane helix-helix association J. Mol. Biol. 296 2000 911 919
-
(2000)
J. Mol. Biol.
, vol.296
, pp. 911-919
-
-
Russ, W.P.1
Engelman, D.M.2
-
53
-
-
1642396353
-
Involvement of Transmembrane Domain Interactions in Signal Transduction by α/β Integrins
-
DOI 10.1074/jbc.M312749200
-
D. Schneider, and D.M. Engelman Involvement of transmembrane domain interactions in signal transduction by alpha/beta integrins J. Biol. Chem. 279 2004 9840 9846 (Pubitemid 38372582)
-
(2004)
Journal of Biological Chemistry
, vol.279
, Issue.11
, pp. 9840-9846
-
-
Schneider, D.1
Engelman, D.M.2
-
54
-
-
0008819754
-
The GROMOS biomolecular simulation program package
-
W.R.P. Scott, P.H. Hunenberger, I.G. Tironi, A.E. Mark, S.R. Billeter, J. Fennen, A.E. Torda, T. Huber, P. Kruger, and W.F. van Gunsteren The GROMOS biomolecular simulation program package J. Phys. Chem. A 103 1999 3596 3607 (Pubitemid 129570863)
-
(1999)
Journal of Physical Chemistry A
, vol.103
, Issue.19
, pp. 3596-3607
-
-
Scott, W.R.P.1
Hunenberger, P.H.2
Tironi, I.G.3
Mark, A.E.4
Billeter, S.R.5
Fennen, J.6
Torda, A.E.7
Huber, T.8
Kruger, P.9
Van Gunsteren, W.F.10
-
55
-
-
4143085058
-
Folding of helical membrane proteins: The role of polar, GxxxG-like and proline motifs
-
DOI 10.1016/j.sbi.2004.07.007, PII S0959440X04001149
-
A. Senes, D.E. Engel, and W.F. DeGrado Folding of helical membrane proteins: the role of polar, GxxxG-like and proline motifs Curr. Opin. Struct. Biol. 14 2004 465 479 (Pubitemid 39094354)
-
(2004)
Current Opinion in Structural Biology
, vol.14
, Issue.4
, pp. 465-479
-
-
Senes, A.1
Engel, D.E.2
Degrado, W.F.3
-
56
-
-
77957901688
-
Lipid-mediated interactions tune the association of glycophorin A helix and its disruptive mutants in membranes
-
D. Sengupta, and S.J. Marrink Lipid-mediated interactions tune the association of glycophorin A helix and its disruptive mutants in membranes Phys. Chem. Chem. Phys. 12 2010 12987 12996
-
(2010)
Phys. Chem. Chem. Phys.
, vol.12
, pp. 12987-12996
-
-
Sengupta, D.1
Marrink, S.J.2
-
57
-
-
79954524314
-
From coarse-grained to atomistic: A serial multi-scale approach to membrane protein simulations
-
in press
-
P.J. Stansfeld, and M.S.P. Sansom From coarse-grained to atomistic: a serial multi-scale approach to membrane protein simulations J. Chem. Theory Comput. 2011 in press
-
(2011)
J. Chem. Theory Comput.
-
-
Stansfeld, P.J.1
Sansom, M.S.P.2
-
58
-
-
27344454932
-
GROMACS: Fast, flexible, and free
-
DOI 10.1002/jcc.20291
-
D. Van Der Spoel, E. Lindahl, B. Hess, G. Groenhof, A.E. Mark, and H.J. Berendsen GROMACS: fast, flexible, and free J. Comput. Chem. 26 2005 1701 1718 (Pubitemid 43076182)
-
(2005)
Journal of Computational Chemistry
, vol.26
, Issue.16
, pp. 1701-1718
-
-
Van Der Spoel, D.1
Lindahl, E.2
Hess, B.3
Groenhof, G.4
Mark, A.E.5
Berendsen, H.J.C.6
-
59
-
-
77951926371
-
A transmembrane polar interaction is involved in the functional regulation of integrin alpha L beta 2
-
A. Vararattanavech, C.-P. Chng, K. Parthasarathy, X.-Y. Tang, J. Torres, and S.-M. Tan A transmembrane polar interaction is involved in the functional regulation of integrin alpha L beta 2 J. Mol. Biol. 398 2010 569 583
-
(2010)
J. Mol. Biol.
, vol.398
, pp. 569-583
-
-
Vararattanavech, A.1
Chng, C.-P.2
Parthasarathy, K.3
Tang, X.-Y.4
Torres, J.5
Tan, S.-M.6
-
60
-
-
33745182553
-
Helix interactions in membranes: Lessons from unrestrained Monte Carlo simulations
-
Y.A. Vereshaga, P.E. Volynsky, D.E. Nolde, A.S. Arseniev, and R.G. Efremov Helix interactions in membranes: Lessons from unrestrained Monte Carlo simulations J. Chem. Theory Comput. 1 2005 1252 1264
-
(2005)
J. Chem. Theory Comput.
, vol.1
, pp. 1252-1264
-
-
Vereshaga, Y.A.1
Volynsky, P.E.2
Nolde, D.E.3
Arseniev, A.S.4
Efremov, R.G.5
-
61
-
-
77949865294
-
Computer simulations and modeling-assisted ToxR screening in deciphering 3D structures of transmembrane α-helical dimers: Ephrin receptor A1
-
P.E. Volynsky, E.A. Mineeva, M.V. Goncharuk, Y.S. Ermolyuk, A.S. Arseniev, and R.G. Efremov Computer simulations and modeling-assisted ToxR screening in deciphering 3D structures of transmembrane α-helical dimers: ephrin receptor A1 Phys. Biol. 7 2010 16014
-
(2010)
Phys. Biol.
, vol.7
, pp. 16014
-
-
Volynsky, P.E.1
Mineeva, E.A.2
Goncharuk, M.V.3
Ermolyuk, Y.S.4
Arseniev, A.S.5
Efremov, R.G.6
-
62
-
-
48249125437
-
Transmembrane and cytoplasmic domains in integrin activation and protein-protein interactions (review)
-
K.L. Wegener, and I.D. Campbell Transmembrane and cytoplasmic domains in integrin activation and protein-protein interactions (review) Mol. Membr. Biol. 25 2008 376 387
-
(2008)
Mol. Membr. Biol.
, vol.25
, pp. 376-387
-
-
Wegener, K.L.1
Campbell, I.D.2
-
63
-
-
33845987101
-
Structural Basis of Integrin Activation by Talin
-
DOI 10.1016/j.cell.2006.10.048, PII S0092867406015960
-
K.L. Wegener, A.W. Partridge, J. Han, A.R. Pickford, R.C. Liddington, M.H. Ginsberg, and I.D. Campbell Structural basis of integrin activation by talin Cell 128 2007 171 182 (Pubitemid 46048890)
-
(2007)
Cell
, vol.128
, Issue.1
, pp. 171-182
-
-
Wegener, K.L.1
Partridge, A.W.2
Han, J.3
Pickford, A.R.4
Liddington, R.C.5
Ginsberg, M.H.6
Campbell, I.D.7
-
64
-
-
70449566822
-
Structure of an integrin alphaIIb beta3 transmembrane-cytoplasmic heterocomplex provides insight into integrin activation
-
J. Yang, Y.-Q. Ma, R.C. Page, S. Misra, E.F. Plow, and J. Qin Structure of an integrin alphaIIb beta3 transmembrane-cytoplasmic heterocomplex provides insight into integrin activation Proc. Natl. Acad. Sci. USA 106 2009 17729 17734
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 17729-17734
-
-
Yang, J.1
Ma, Y.-Q.2
Page, R.C.3
Misra, S.4
Plow, E.F.5
Qin, J.6
-
65
-
-
64749101260
-
The structure of a receptor with two associating transmembrane domains on the cell surface: Integrin alphaIIbbeta3
-
J. Zhu, B.H. Luo, P. Barth, J. Schonbrun, D. Baker, and T.A. Springer The structure of a receptor with two associating transmembrane domains on the cell surface: integrin alphaIIbbeta3 Mol. Cell 34 2009 234 249
-
(2009)
Mol. Cell
, vol.34
, pp. 234-249
-
-
Zhu, J.1
Luo, B.H.2
Barth, P.3
Schonbrun, J.4
Baker, D.5
Springer, T.A.6
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