메뉴 건너뛰기




Volumn 138, Issue 4, 2011, Pages 421-436

Potassium-selective block of barium permeation through single KcsA channels

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; BARIUM; CESIUM; KCSA PROTEIN, STREPTOMYCES COELICOLOR; POTASSIUM; QUATERNARY AMMONIUM DERIVATIVE; RUBIDIUM; VOLTAGE GATED POTASSIUM CHANNEL;

EID: 80054028670     PISSN: 00221295     EISSN: 15407748     Source Type: Journal    
DOI: 10.1085/jgp.201110684     Document Type: Article
Times cited : (55)

References (50)
  • 1
    • 1342309210 scopus 로고    scopus 로고
    • Parallel Metropolis coupled Markov chain Monte Carlo for Bayesian phylogenetic inference
    • Altekar, G., S. Dwarkadas, J.P. Huelsenbeck, and F. Ronquist. 2004. Parallel Metropolis coupled Markov chain Monte Carlo for Bayesian phylogenetic inference. Bioinformatics. 20:407-415. http://dx.doi.org/10.1093/bioinformatics/btg427
    • (2004) Bioinformatics , vol.20 , pp. 407-415
    • Altekar, G.1    Dwarkadas, S.2    Huelsenbeck, J.P.3    Ronquist, F.4
  • 2
    • 79956067240 scopus 로고    scopus 로고
    • Perspectives on: ion selectivity
    • Andersen, O.S. 2011. Perspectives on: ion selectivity. J. Gen. Physiol. 137:393-395. http://dx.doi.org/10.1085/jgp.201110651
    • (2011) J. Gen. Physiol , vol.137 , pp. 393-395
    • Andersen, O.S.1
  • 3
    • 0034690250 scopus 로고    scopus 로고
    • Ion permeation mechanism of the potassium channel
    • Åqvist, J., and V. Luzhkov. 2000. Ion permeation mechanism of the potassium channel. Nature. 404:881-884. http://dx.doi.org/ 10.1038/35009114
    • (2000) Nature , vol.404 , pp. 881-884
    • Åqvist, J.1    Luzhkov, V.2
  • 4
    • 0030031856 scopus 로고    scopus 로고
    • Use-dependent blockers and exit rate of the last ion from the multi-ion pore of a K+ channel
    • Baukrowitz, T., and G. Yellen. 1996. Use-dependent blockers and exit rate of the last ion from the multi-ion pore of a K+ channel. Science. 271:653-656. http://dx.doi.org/10.1126/science.271.5249.653
    • (1996) Science , vol.271 , pp. 653-656
    • Baukrowitz, T.1    Yellen, G.2
  • 6
    • 0035498860 scopus 로고    scopus 로고
    • Energetics of ion conduction through the K+ channel
    • Bernèche, S., and B. Roux. 2001. Energetics of ion conduction through the K+ channel. Nature. 414:73-77. http://dx.doi .org/10.1038/35102067
    • (2001) Nature , vol.414 , pp. 73-77
    • Bernèche, S.1    Roux, B.2
  • 7
    • 0015424492 scopus 로고
    • Negative conductance caused by entry of sodium and cesium ions into the potassium channels of squid axons
    • Bezanilla, F., and C.M. Armstrong. 1972. Negative conductance caused by entry of sodium and cesium ions into the potassium channels of squid axons. J. Gen. Physiol. 60:588-608. http://dx .doi.org/10.1085/jgp.60.5.588
    • (1972) J. Gen. Physiol , vol.60 , pp. 588-608
    • Bezanilla, F.1    Armstrong, C.M.2
  • 8
    • 77955087369 scopus 로고    scopus 로고
    • Conformational dynamics in the selectivity filter of KcsA in response to potassium ion concentration
    • Bhate, M.P., B.J. Wylie, L. Tian, and A.E. McDermott. 2010. Conformational dynamics in the selectivity filter of KcsA in response to potassium ion concentration. J. Mol. Biol. 401:155-166. http://dx.doi.org/10.1016/j.jmb.2010.06.031
    • (2010) J. Mol. Biol , vol.401 , pp. 155-166
    • Bhate, M.P.1    Wylie, B.J.2    Tian, L.3    McDermott, A.E.4
  • 10
    • 79955124042 scopus 로고    scopus 로고
    • Mechanism for selectivity-inactivation coupling in KcsA potassium channels
    • Cheng, W.W., J.G. McCoy, A.N. Thompson, C.G. Nichols, and C.M. Nimigean. 2011. Mechanism for selectivity-inactivation coupling in KcsA potassium channels. Proc. Natl. Acad. Sci. USA. 108:5272-5277. http://dx.doi.org/10.1073/pnas.1014186108
    • (2011) Proc. Natl. Acad. Sci. USA , vol.108 , pp. 5272-5277
    • Cheng, W.W.1    McCoy, J.G.2    Thompson, A.N.3    Nichols, C.G.4    Nimigean, C.M.5
  • 11
    • 0000410893 scopus 로고    scopus 로고
    • The principles of the stochastic interpretation of ion-channel mechanisms
    • B. Sakmann and E. Neher, editors. Springer, New York
    • Colquhoun, D., and A.G. Hawkes. 2009a. The principles of the stochastic interpretation of ion-channel mechanisms. In Single-Channel Recording. B. Sakmann and E. Neher, editors. Springer, New York. 397-482.
    • (2009) Single-Channel Recording , pp. 397-482
    • Colquhoun, D.1    Hawkes, A.G.2
  • 12
    • 0000410893 scopus 로고    scopus 로고
    • A Q-matrix cookbook: how to write only one program to calculate the single-channel and macroscopic predictions for any kinetic mechanism
    • B. Sakmann and E. Neher, editors. Springer, New York
    • Colquhoun, D., and A.G. Hawkes. 2009b. A Q-matrix cookbook: how to write only one program to calculate the single-channel and macroscopic predictions for any kinetic mechanism. In Single-Channel Recording. B. Sakmann and E. Neher, editors. Springer, New York. 589-633.
    • (2009) Single-Channel Recording , pp. 589-633
    • Colquhoun, D.1    Hawkes, A.G.2
  • 14
    • 75749153312 scopus 로고    scopus 로고
    • Strict coupling between CFTR's catalytic cycle and gating of its Cl- ion pore revealed by distributions of open channel burst durations
    • - ion pore revealed by distributions of open channel burst durations. Proc. Natl. Acad. Sci. USA. 107:1241-1246. http://dx.doi.org/10.1073/ pnas.0911061107
    • (2010) Proc. Natl. Acad. Sci. USA , vol.107 , pp. 1241-1246
    • Csanády, L.1    Vergani, P.2    Gadsby, D.C.3
  • 15
    • 79551660280 scopus 로고    scopus 로고
    • Tuning the ion selectivity of tetrameric cation channels by changing the number of ion binding sites
    • Derebe, M.G., D.B. Sauer, W. Zeng, A. Alam, N. Shi, and Y. Jiang. 2011. Tuning the ion selectivity of tetrameric cation channels by changing the number of ion binding sites. Proc. Natl. Acad. Sci. USA. 108:598-602. http://dx.doi.org/10.1073/pnas.1013636108
    • (2011) Proc. Natl. Acad. Sci. USA , vol.108 , pp. 598-602
    • Derebe, M.G.1    Sauer, D.B.2    Zeng, W.3    Alam, A.4    Shi, N.5    Jiang, Y.6
  • 17
    • 77955550391 scopus 로고    scopus 로고
    • Ion selectivity of the KcsA channel: a perspective from multi-ion free energy landscapes
    • Egwolf, B., and B. Roux. 2010. Ion selectivity of the KcsA channel: a perspective from multi-ion free energy landscapes. J. Mol. Biol. 401:831-842. http://dx.doi.org/10.1016/j.jmb.2010.07.006
    • (2010) J. Mol. Biol , vol.401 , pp. 831-842
    • Egwolf, B.1    Roux, B.2
  • 18
    • 29144472228 scopus 로고    scopus 로고
    • Activationcoupled inactivation in the bacterial potassium channel KcsA
    • Gao, L., X. Mi, V. Paajanen, K. Wang, and Z. Fan. 2005. Activationcoupled inactivation in the bacterial potassium channel KcsA. Proc. Natl. Acad. Sci. USA. 102:17630-17635. http://dx.doi.org/10.1073/ pnas.0505158102
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 17630-17635
    • Gao, L.1    Mi, X.2    Paajanen, V.3    Wang, K.4    Fan, Z.5
  • 19
    • 0004012196 scopus 로고    scopus 로고
    • Chapman and Hall/CRC, Boca Raton, FL
    • Gelman, A. 2004. Bayesian Data Analysis. Chapman and Hall/CRC, Boca Raton, FL. 696 pp.
    • (2004) Bayesian Data Analysis , pp. 696
    • Gelman, A.1
  • 20
    • 61449197652 scopus 로고    scopus 로고
    • Markov chain Monte Carlo fitting of single-channel data from inositol trisphosphate receptors
    • Gin, E., M. Falcke, L.E. Wagner, D.I. Yule, and J. Sneyd. 2009. Markov chain Monte Carlo fitting of single-channel data from inositol trisphosphate receptors. J. Theor. Biol. 257:460-474. http://dx.doi .org/10.1016/j.jtbi.2008.12.020
    • (2009) J. Theor. Biol , vol.257 , pp. 460-474
    • Gin, E.1    Falcke, M.2    Wagner, L.E.3    Yule, D.I.4    Sneyd, J.5
  • 21
    • 77956889087 scopus 로고
    • Reversible jump Markov chain Monte Carlo computation and Bayesian model determination
    • Green, P.J. 1995. Reversible jump Markov chain Monte Carlo computation and Bayesian model determination. Biometrika. 82:711-732. http://dx.doi.org/10.1093/biomet/82.4.711
    • (1995) Biometrika , vol.82 , pp. 711-732
    • Green, P.J.1
  • 22
    • 0031594195 scopus 로고    scopus 로고
    • A permanent ion binding site located between two gates of the Shaker K+ channel
    • Harris, R.E., H.P. Larsson, and E.Y. Isacoff. 1998. A permanent ion binding site located between two gates of the Shaker K+ channel. Biophys. J. 74:1808-1820. http://dx.doi.org/10.1016/ S0006-3495(98)77891-9
    • (1998) Biophys. J , vol.74 , pp. 1808-1820
    • Harris, R.E.1    Larsson, H.P.2    Isacoff, E.Y.3
  • 23
    • 77956890234 scopus 로고
    • Monte Carlo sampling methods using Markov chains and their applications
    • Hastings, W.K. 1970. Monte Carlo sampling methods using Markov chains and their applications. Biometrika. 57:97-109. http:// dx.doi.org/10.1093/biomet/57.1.97
    • (1970) Biometrika , vol.57 , pp. 97-109
    • Hastings, W.K.1
  • 24
    • 0032875483 scopus 로고    scopus 로고
    • Single Streptomyces lividans K+ channels: functional asymmetries and sidedness of proton activation
    • Heginbotham, L., M. LeMasurier, L. Kolmakova-Partensky, and C. Miller. 1999. Single Streptomyces lividans K+ channels: functional asymmetries and sidedness of proton activation. J. Gen. Physiol. 114:551-560. http://dx.doi.org/10.1085/jgp.114.4.551
    • (1999) J. Gen. Physiol , vol.114 , pp. 551-560
    • Heginbotham, L.1    LeMasurier, M.2    Kolmakova-Partensky, L.3    Miller, C.4
  • 25
    • 0003443746 scopus 로고    scopus 로고
    • Third edition. Sinauer Associates, Sunderland, MA
    • Hille, B. 2001. Ion Channels of Excitable Membranes. Third edition. Sinauer Associates, Sunderland, MA. 814 pp.
    • (2001) Ion Channels of Excitable Membranes , pp. 814
    • Hille, B.1
  • 26
    • 0018117903 scopus 로고
    • Potassium channels as multi-ion singlefile pores
    • Hille, B., and W. Schwarz. 1978. Potassium channels as multi-ion singlefile pores. J. Gen. Physiol. 72:409-442. http://dx.doi.org/10.1085/ jgp.72.4.409
    • (1978) J. Gen. Physiol , vol.72 , pp. 409-442
    • Hille, B.1    Schwarz, W.2
  • 27
    • 33748263658 scopus 로고
    • The potassium permeability of a giant nerve fibre
    • Hodgkin, A.L., and R.D. Keynes. 1955. The potassium permeability of a giant nerve fibre. J. Physiol. 128:61-88.
    • (1955) J. Physiol. , vol.128 , pp. 61-88
    • Hodgkin, A.L.1    Keynes, R.D.2
  • 30
    • 0034855137 scopus 로고    scopus 로고
    • KcsA: it's a potassium channel
    • LeMasurier, M., L. Heginbotham, and C. Miller. 2001. KcsA: it's a potassium channel. J. Gen. Physiol. 118:303-314. http://dx.doi.org/ 10.1085/jgp.118.3.303
    • (2001) J. Gen. Physiol , vol.118 , pp. 303-314
    • LeMasurier, M.1    Heginbotham, L.2    Miller, C.3
  • 31
    • 0017866923 scopus 로고
    • Electrostatic calculations for an ion channel I. Energy and potential profiles and interactions between ions
    • Levitt, D.G. 1978. Electrostatic calculations for an ion channel. I. Energy and potential profiles and interactions between ions. Biophys. J. 22:209-219. http://dx.doi.org/10.1016/S0006-3495 (78)85485-X
    • (1978) Biophys. J , vol.22 , pp. 209-219
    • Levitt, D.G.1
  • 34
    • 0023369648 scopus 로고
    • Trapping single ions inside single ion channels
    • Miller, C. 1987. Trapping single ions inside single ion channels. Biophys. J. 52:123-126. http://dx.doi.org/10.1016/S0006-3495 (87)83196-X
    • (1987) Biophys. J. , vol.52 , pp. 123-126
    • Miller, C.1
  • 37
    • 0023709415 scopus 로고
    • Potassium blocks barium permeation through a calcium-activated potassium channel
    • Neyton, J., and C. Miller. 1988b. Potassium blocks barium permeation through a calcium-activated potassium channel. J. Gen. Physiol. 92:549-567. http://dx.doi.org/10.1085/jgp.92.5.549
    • (1988) J. Gen. Physiol , vol.92 , pp. 549-567
    • Neyton, J.1    Miller, C.2
  • 38
    • 33846625994 scopus 로고    scopus 로고
    • Importance of hydration and dynamics on the selectivity of the KcsA and NaK channels
    • Noskov, S.Y., and B. Roux. 2007. Importance of hydration and dynamics on the selectivity of the KcsA and NaK channels. J. Gen. Physiol. 129:135-143. http://dx.doi.org/10.1085/jgp.200609633
    • (2007) J. Gen. Physiol. , vol.129 , pp. 135-143
    • Noskov, S.Y.1    Roux, B.2
  • 39
    • 7244251461 scopus 로고    scopus 로고
    • Control of ion selectivity in potassium channels by electrostatic and dynamic properties of carbonyl ligands
    • Noskov, S.Y., S. Bernèche, and B. Roux. 2004. Control of ion selectivity in potassium channels by electrostatic and dynamic properties of carbonyl ligands. Nature. 431:830-834. http://dx.doi .org/10.1038/nature02943
    • (2004) Nature , vol.431 , pp. 830-834
    • Noskov, S.Y.1    Bernèche, S.2    Roux, B.3
  • 40
    • 2342517139 scopus 로고    scopus 로고
    • MCMC for hidden Markov models incorporating aggregation of states and filtering
    • Rosales, R.A. 2004. MCMC for hidden Markov models incorporating aggregation of states and filtering. Bull. Math. Biol. 66:1173-1199. http://dx.doi.org/10.1016/j.bulm.2003.12.001
    • (2004) Bull. Math. Biol , vol.66 , pp. 1173-1199
    • Rosales, R.A.1
  • 41
    • 77953576876 scopus 로고    scopus 로고
    • Exploring the ion selectivity properties of a large number of simplified binding site models
    • Roux, B. 2010. Exploring the ion selectivity properties of a large number of simplified binding site models. Biophys. J. 98:2877-2885. http://dx.doi.org/10.1016/j.bpj.2010.03.038
    • (2010) Biophys. J , vol.98 , pp. 2877-2885
    • Roux, B.1
  • 44
    • 44349157807 scopus 로고    scopus 로고
    • Molecular mechanism of pH sensing in KcsA potassium channels
    • Thompson, A.N., D.J. Posson, P.V. Parsa, and C.M. Nimigean. 2008. Molecular mechanism of pH sensing in KcsA potassium channels. Proc. Natl. Acad. Sci. USA. 105:6900-6905. http://dx.doi.org/10 .1073/pnas.0800873105
    • (2008) Proc. Natl. Acad. Sci. USA , vol.105 , pp. 6900-6905
    • Thompson, A.N.1    Posson, D.J.2    Parsa, P.V.3    Nimigean, C.M.4
  • 46
    • 38049095537 scopus 로고    scopus 로고
    • + selectivity in K channels and valinomycin: over-coordination versus cavity-size constraints
    • + selectivity in K channels and valinomycin: over-coordination versus cavity-size constraints. J. Mol. Biol. 376:13-22. http://dx.doi.org/10.1016/ j.jmb.2007.11.059
    • (2008) J. Mol. Biol , vol.376 , pp. 13-22
    • Varma, S.1    Sabo, D.2    Rempe, S.B.3
  • 49
    • 77955423895 scopus 로고    scopus 로고
    • + selectivity from high-resolution structures of an open K+ channel pore
    • + channel pore. Nat. Struct. Mol. Biol. 17:1019-1023. http://dx.doi.org/10.1038/ nsmb.1865
    • (2010) Nat. Struct. Mol. Biol , vol.17 , pp. 1019-1023
    • Ye, S.1    Li, Y.2    Jiang, Y.3
  • 50
    • 0142185496 scopus 로고    scopus 로고
    • The occupancy of ions in the K+ selectivity filter: charge balance and coupling of ion binding to a protein conformational change underlie high conduction rates
    • + selectivity filter: charge balance and coupling of ion binding to a protein conformational change underlie high conduction rates. J. Mol. Biol. 333:965-975. http://dx.doi.org/10.1016/ j.jmb.2003.09.022
    • (2003) J. Mol. Biol , vol.333 , pp. 965-975
    • Zhou, Y.1    MacKinnon, R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.