-
1
-
-
30344484891
-
Internal-sensing machinery directs the activity of the regulatory network in Escherichia coli
-
DOI 10.1016/j.tim.2005.11.002, PII S0966842X05003057
-
Martinez-Antonio A, Janga SC, Salgado H et al. Internal-sensing machinery directs the activity of the regulatory network in Escherichia coli. Trends Microbiol 2006; 14(l):22-27. (Pubitemid 43063188)
-
(2006)
Trends in Microbiology
, vol.14
, Issue.1
, pp. 22-27
-
-
Martinez-Antonio, A.1
Janga, S.C.2
Salgado, H.3
Collado-Vides, J.4
-
2
-
-
58549091848
-
Eukaryotic gene regulation in three dimensions and its impact on genome evolution
-
Babu MM, Janga SC, de Santiago I et al. Eukaryotic gene regulation in three dimensions and its impact on genome evolution. Curr Opin Genet Dev 2008; 18(6):571-582.
-
(2008)
Curr Opin Genet Dev
, vol.18
, Issue.6
, pp. 571-582
-
-
Babu, M.M.1
Janga, S.C.2
De Santiago, I.3
-
3
-
-
36849063165
-
Structure and evolution of gene regulatory networks in microbial genomes
-
DOI 10.1016/j.resmic.2007.09.001, PII S0923250807001763, Microbial Genomics
-
Janga SC, Collado-Vides J. Structure and evolution of gene regulatory networks in microbial genomes. Res Microbiol 2007; 158(10):787-794. (Pubitemid 350235176)
-
(2007)
Research in Microbiology
, vol.158
, Issue.10
, pp. 787-794
-
-
Janga, S.C.1
Collado-Vides, J.2
-
4
-
-
2942606066
-
Structure and evolution of transcriptional regulatory networks
-
DOI 10.1016/j.sbi.2004.05.004, PII S0959440X04000788
-
Babu MM, Luscombe NM, Aravind L et al. Structure and evolution of transcriptional regulatory networks. Curr Opin Struct Biol 2004; 14(3):283-291. (Pubitemid 38749055)
-
(2004)
Current Opinion in Structural Biology
, vol.14
, Issue.3
, pp. 283-291
-
-
Babu, M.M.1
Luscombe, N.M.2
Aravind, L.3
Gerstein, M.4
Teichmann, S.A.5
-
5
-
-
0035805255
-
Integrated genomic and proteomic analyses of a systematically perturbed metabolic network
-
DOI 10.1126/science.292.5518.929
-
Ideker T, Thorsson V, Ranish JA et al. Integrated genomic and proteomic analyses of a systematically perturbed metabolic network. Science 2001; 292(5518):929-934. (Pubitemid 32422490)
-
(2001)
Science
, vol.292
, Issue.5518
, pp. 929-934
-
-
Ideker, T.1
Thorsson, V.2
Ranish, J.A.3
Christmas, R.4
Buhler, J.5
Eng, J.K.6
Bumgarner, R.7
Goodlett, D.R.8
Aebersold, R.9
Hood, L.10
-
6
-
-
0141920354
-
Comparing protein abundance and mRNA expression levels on a genomic scale
-
Greenbaum D, Colangelo C, Williams K et al. Comparing protein abundance and mRNA expression levels on a genomic scale. Genome Biol 2003; 4(9):117.
-
(2003)
Genome Biol
, vol.4
, Issue.9
, pp. 117
-
-
Greenbaum, D.1
Colangelo, C.2
Williams, K.3
-
8
-
-
44449166478
-
RNA-binding proteins and post-transcriptional gene regulation
-
Glisovic T, Bachorik JL, Yong J et al. RNA-binding proteins and post-transcriptional gene regulation. FEBS Lett 2008; 582(14):1977-1986.
-
(2008)
FEBS Lett
, vol.582
, Issue.14
, pp. 1977-1986
-
-
Glisovic, T.1
Bachorik, J.L.2
Yong, J.3
-
9
-
-
23944483135
-
Post-transcriptional control of gene expression: A genome-wide perspective
-
DOI 10.1016/j.tibs.2005.07.005, PII S0968000405002124
-
Mata J, Marguerat S, Bahler J. Post-Transcriptional control of gene expression: a genome-wide perspective. Trends Biochem Sci 2005; 30(9):506-514. (Pubitemid 41206506)
-
(2005)
Trends in Biochemical Sciences
, vol.30
, Issue.9
, pp. 506-514
-
-
Mata, J.1
Marguerat, S.2
Bahler, J.3
-
10
-
-
34250735674
-
RNAregulons: Coordination of post-transcriptional events
-
Keene JD. RNAregulons: coordination of post-transcriptional events. Nat Rev Genet 2007; 8(7):533-543.
-
(2007)
Nat Rev Genet
, vol.8
, Issue.7
, pp. 533-543
-
-
Keene, J.D.1
-
11
-
-
61549093377
-
The RNA infrastructure: Dark matter of the eukaryotic cell?
-
Collins LJ, Penny D. The RNA infrastructure: dark matter of the eukaryotic cell?. Trends Genet 2009; 25(3):120-128.
-
(2009)
Trends Genet
, vol.25
, Issue.3
, pp. 120-128
-
-
Collins, L.J.1
Penny, D.2
-
13
-
-
67649671966
-
SR proteins in vertical integration of gene expression from transcription to RNA processing to translation
-
Zhong XY, Wang P, Han J et al. SR proteins in vertical integration of gene expression from transcription to RNA processing to translation. Mol Cell 2009; 35(1):1-10.
-
(2009)
Mol Cell
, vol.35
, Issue.1
, pp. 1-10
-
-
Zhong, X.Y.1
Wang, P.2
Han, J.3
-
14
-
-
0032518219
-
Identification and characterization of srp1, a gene of fission yeast encoding a RNA binding domain and a RS domain typical of SR splicing factors
-
DOI 10.1093/nar/26.2.505
-
Gross T, Richert K, Mierke C et al. Identification and characterization of srpl, a gene of fission yeast encoding a RNA binding domain and a RS domain typical of SR splicing factors. Nucleic Acids Res 1998; 26(2):505-511. (Pubitemid 28291576)
-
(1998)
Nucleic Acids Research
, vol.26
, Issue.2
, pp. 505-511
-
-
Gross, T.1
Richert, K.2
Mierke, C.3
Lutzelberger, M.4
Kaufer, N.F.5
-
16
-
-
0242497663
-
CLIP identifies Nova-regulated RNA networks in the brain
-
DOI 10.1126/science.1090095
-
Ule J, Jensen KB, Ruggiu M et al. CLIP identifies Nova-regulated RNA networks in the brain. Science 2003; 302(5648):1212-1215. (Pubitemid 37421026)
-
(2003)
Science
, vol.302
, Issue.5648
, pp. 1212-1215
-
-
Ule, J.1
Jensen, K.B.2
Ruggiu, M.3
Mele, A.4
Ule, A.5
Darnell, R.B.6
-
17
-
-
33749056769
-
An RNA map predicting Nova-dependent splicing regulation
-
DOI 10.1038/nature05304, PII NATURE05304
-
Ule J, Stefani G, Mele A et al. An RNA map predicting Nova-dependent splicing regulation. Nature 2006; 444(7119):580-586. (Pubitemid 44864431)
-
(2006)
Nature
, vol.444
, Issue.7119
, pp. 580-586
-
-
Ule, J.1
Stefani, G.2
Mele, A.3
Ruggiu, M.4
Wang, X.5
Taneri, B.6
Gaasterland, T.7
Blencowe, B.J.8
Darnell, R.B.9
-
18
-
-
0032037421
-
TAP, the human homolog of Mex67p, mediates CTE-dependent RNA export from the nucleus
-
Gruter P, Tabernero C, von Kobbe C et al. TAP, the human homolog of Mex67p, mediates CTE-dependent RNAexportfromthe nucleus. Mol Cell 1998; l(5):649-659. (Pubitemid 128379243)
-
(1998)
Molecular Cell
, vol.1
, Issue.5
, pp. 649-659
-
-
Gruter, P.1
Tabernero, C.2
Von Kobbe, C.3
Schmitt, C.4
Saavedra, C.5
Bachi, A.6
Wilm, M.7
Felber, B.K.8
Izaurralde, E.9
-
19
-
-
54949148332
-
Diverse RNA-binding proteins interact with functionally related sets ofRNAs, suggesting an extensive regulatory system
-
Hogan DJ, Riordan DP, Gerber AP et al. Diverse RNA-binding proteins interact with functionally related sets ofRNAs, suggesting an extensive regulatory system. PLoS Biol 2008; 6(10):e255.
-
(2008)
PLoS Biol
, vol.6
, Issue.10
-
-
Hogan, D.J.1
Riordan, D.P.2
Gerber, A.P.3
-
20
-
-
18544377013
-
The RNA recognition motif, a plastic RNA-binding platform to regulate post-transcriptional gene expression
-
DOI 10.1111/j.1742-4658.2005.04653.x
-
Maris C, Dominguez C, Allain FH. The RNA recognition motif, a plastic RNA-binding platform to regulate post-transcriptional gene expression. FEBS J 2005; 272(9):2118-2131. (Pubitemid 40655326)
-
(2005)
FEBS Journal
, vol.272
, Issue.9
, pp. 2118-2131
-
-
Maris, C.1
Dominguez, C.2
Allain, F.H.-T.3
-
21
-
-
33645220015
-
Metabolic enzymes that bind RNA: Yet another level of cellular regulatory network?
-
Ciesla J. Metabolic enzymes that bind RNA: yet another level of cellular regulatory network?. Acta Biochim Pol 2006; 53(1):11-32.
-
(2006)
Acta Biochim Pol
, vol.53
, Issue.1
, pp. 11-32
-
-
Ciesla, J.1
-
22
-
-
70350340058
-
Profiling the human protein-DNA interactome reveals ERK2 as atranscriptional repressor ofinterferon signaling
-
Hu S,XieZ, Onishi Aet al. Profiling the human protein-DNA interactome reveals ERK2 as atranscriptional repressor ofinterferon signaling. Cell 2009; 139(3):610-622.
-
(2009)
Cell
, vol.139
, Issue.3
, pp. 610-622
-
-
Sxiez, H.1
Aet Al., O.2
-
23
-
-
2142828035
-
Alterations in the interaction between iron regulatory proteins and their iron responsive element in normal and Alzheimer's diseased brains
-
Pinero DJ, Hu J, Connor JR. Alterations in the interaction between iron regulatory proteins and their iron responsive element in normal and Alzheimer's diseased brains. Cell Mol Biol (Noisy-le-grand) 2000; 46(4):761-776.
-
(2000)
Cell Mol Biol (Noisy-le-grand)
, vol.46
, Issue.4
, pp. 761-776
-
-
Pinero, D.J.1
Hu, J.2
Connor, J.R.3
-
24
-
-
0032726856
-
Optimized RNA gel-shift and UV cross-linking assays for characterization of cytoplasmic RNA-protein interactions
-
1042
-
Thomson AM, Rogers JT, Walker CE et al. Optimized RNA gel-shift and UV cross-linking assays for characterization of cytoplasmic RNA-protein interactions. Biotechniques 1999; 27(5):1032-1039, 1042.
-
(1999)
Biotechniques
, vol.27
, Issue.5
, pp. 1032-1039
-
-
Thomson, A.M.1
Rogers, J.T.2
Walker, C.E.3
-
25
-
-
0030089534
-
A one-hybrid system for detecting RNA-protein interactions
-
Wilhelm JE, Vale RD. A one-hybrid system for detecting RNA-protein interactions. Genes Cells 1996; 1(3):317-323. (Pubitemid 126673128)
-
(1996)
Genes to Cells
, vol.1
, Issue.3
, pp. 317-323
-
-
Wilhelm, J.E.1
Vale, R.D.2
-
26
-
-
0029776689
-
A three-hybrid system to detect RNA-protein interactions in vivo
-
DOI 10.1073/pnas.93.16.8496
-
SenGupta DJ, Zhang B, Kraemer B et al. A three-hybrid system to detect RNA-protein interactions in vivo. Proc Natl Acad Sci USA 1996; 93(16):8496-8501. (Pubitemid 26269587)
-
(1996)
Proceedings of the National Academy of Sciences of the United States of America
, vol.93
, Issue.16
, pp. 8496-8501
-
-
SenGupta, D.J.1
Zhang, B.2
Kraemer, B.3
Pochart, P.4
Fields, S.5
Wickens, M.6
-
27
-
-
19344365947
-
Extensive association offunctionally and cytotopically related mRNAs with Puffamily RNA-binding proteins in yeast
-
Gerber AP, Herschlag D, Brown PO. Extensive association offunctionally and cytotopically related mRNAs with Puffamily RNA-binding proteins in yeast. PLoS Biol 2004; 2(3):E79.
-
(2004)
PLoS Biol
, vol.2
, Issue.3
-
-
Gerber, A.P.1
Herschlag, D.2
Brown, P.O.3
-
28
-
-
0037313537
-
Genome-wide analysis of RNA-protein interactions illustrates specificity of the mRNA export machinery
-
DOI 10.1038/ng1080
-
Hieronymus H, Silver PA. Genome-wide analysis of RNA-protein interactions illustrates specificity of the mRNA export machinery. Nat Genet 2003; 33(2):155-161. (Pubitemid 36177066)
-
(2003)
Nature Genetics
, vol.33
, Issue.2
, pp. 155-161
-
-
Hieronymus, H.1
Silver, P.A.2
-
29
-
-
70349592843
-
A comprehensive in silico expression analysis of RNA binding proteins in normal and tumor tissue: Identification of potential players in tumor formation
-
Galante PA, Sandhu D, de Sousa Abreu R et al. A comprehensive in silico expression analysis of RNA binding proteins in normal and tumor tissue: Identification of potential players in tumor formation. RNA Biol 2009; 6(4):426-433.
-
(2009)
RNA Biol
, vol.6
, Issue.4
, pp. 426-433
-
-
Galante, P.A.1
Sandhu, D.2
De Sousa Abreu, R.3
-
30
-
-
5644229499
-
Regulation of gene expression by a metabolic enzyme
-
DOI 10.1126/science.1096773
-
Hall DA, Zhu H, Zhu X et al. Regulation of gene expression by a metabolic enzyme. Science 2004; 306(5695):482-484. (Pubitemid 39372447)
-
(2004)
Science
, vol.306
, Issue.5695
, pp. 482-484
-
-
Hall, D.A.1
Zhu, H.2
Zhu, X.3
Royce, T.4
Gerstein, M.5
Snyder, M.6
-
32
-
-
0035860499
-
Global analysis of protein activities using proteome chips
-
DOI 10.1126/science.1062191
-
Zhu H, Bilgin M, Bangham R et al. Global analysis of protein activities using proteome chips. Science 2001; 293(5537):2101-2105. (Pubitemid 32848060)
-
(2001)
Science
, vol.293
, Issue.5537
, pp. 2101-2105
-
-
Zhu, H.1
Bilgin, M.2
Bangham, R.3
Hall, D.4
Casamayor, A.5
Bertone, P.6
Lan, N.7
Jansen, R.8
Bidlingmaier, S.9
Houfek, T.10
Mitchell, T.11
Miller, P.12
Dean, R.A.13
Gerstein, M.14
Snyder, M.15
-
33
-
-
34548736002
-
A protocol for PAIR: PNA-assisted identification of RNA binding proteins in living cells
-
Zeng F, Peritz T, Kannanayakal TJ et al. A protocol for PAIR: PNA-assisted identification of RNA binding proteins in living cells. Nat Protoc 2006; 1(2):920-927.
-
(2006)
Nat Protoc
, vol.1
, Issue.2
, pp. 920-927
-
-
Zeng, F.1
Peritz, T.2
Kannanayakal, T.J.3
-
34
-
-
31944452549
-
In vivo identification of ribonucleoprotein-RNA interactions
-
DOI 10.1073/pnas.0510611103
-
Zielinski J, Kilk K, Peritz T et al. In vivo identification of ribonucleoprotein-RNA interactions. Proc Natl Acad Sci USA 2006; 103(5):1557-1562. (Pubitemid 43191204)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.5
, pp. 1557-1562
-
-
Zielinski, J.1
Kilk, K.2
Peritz, T.3
Kannanayakal, T.4
Miyashiro, K.Y.5
Eiriksdottir, E.6
Jochems, J.7
Langel, U.8
Eberwine, J.9
-
35
-
-
0034647482
-
Role of the mouse ank gene in control of tissue calcification and arthritis
-
DOI 10.1126/science.289.5477.265
-
Ho AM, Johnson MD, Kingsley DM. Role of the mouse ank gene in control of tissue calcification and arthritis. Science 2000; 289(5477):265-270. (Pubitemid 30469899)
-
(2000)
Science
, vol.289
, Issue.5477
, pp. 265-270
-
-
Ho, A.M.1
Johnson, M.D.2
Kingsley, D.M.3
-
36
-
-
0036808018
-
Analysis of subcellularly localized mRNAs using in situ hybridization, mRNA amplification, and expression profiling
-
DOI 10.1023/A:1020956805307
-
Eberwine J, Belt B, Kacharmina JE et al. Analysis of subcellularly localized mRNAs using in situ hybridization, mRNA amplification and expression profiling. Neurochem Res 2002; 27(10):1065-1077. (Pubitemid 35316103)
-
(2002)
Neurochemical Research
, vol.27
, Issue.10
, pp. 1065-1077
-
-
Eberwine, J.1
Belt, B.2
Kacharmina, J.E.3
Miyashiro, K.4
-
37
-
-
0036289532
-
Eukaryotic mRNPs may represent posttranscriptional operons
-
DOI 10.1016/S1097-2765(02)00559-2
-
Keene JD, Tenenbaum SA. Eukaryotic mRNPs may represent post-transcriptional operons. Mol Cell 2002; 9(6):1161-1167. (Pubitemid 34722296)
-
(2002)
Molecular Cell
, vol.9
, Issue.6
, pp. 1161-1167
-
-
Keene, J.D.1
Tenenbaum, S.A.2
-
38
-
-
33749262968
-
Genome-wide analysis of mRNAs bound to the histone stem-loop binding protein
-
DOI 10.1261/rna.76006
-
Townley-Tilson WH, Pendergrass SA, Marzluff WF et al. Genome-wide analysis of mRNAs bound to the histone stem-loop binding protein. RNA 2006; 12(10):1853-1867. (Pubitemid 44484259)
-
(2006)
RNA
, vol.12
, Issue.10
, pp. 1853-1867
-
-
Townley-Tilson, W.H.D.1
Pendergrass, S.A.2
Marzluff, W.F.3
Whitfield, M.L.4
-
39
-
-
23444446940
-
Post-Transcriptional operons and regulons co-ordinating gene expression
-
Keene JD, Lager PJ. Post-Transcriptional operons and regulons co-ordinating gene expression. Chromosome Res 2005; 13(3):327-337.
-
(2005)
Chromosome Res
, vol.13
, Issue.3
, pp. 327-337
-
-
Keene, J.D.1
Lager, P.J.2
-
40
-
-
34548810305
-
AnalysisofturnoverandtranslationregulatoryRNA-binding protein expression through binding to cognate mRNAs
-
PullmannR, Jr. , KimHH, AbdelmohsenKet al. AnalysisofturnoverandtranslationregulatoryRNA-binding protein expression through binding to cognate mRNAs. Mol Cell Biol 2007; 27(18):6265-6278.
-
(2007)
Mol Cell Biol
, vol.27
, Issue.18
, pp. 6265-6278
-
-
Pullmann, R.1
Kim Jr., H.H.2
-
42
-
-
0742305866
-
Network biology: Understanding the cell's functional organization
-
DOI 10.1038/nrg1272
-
Barabasi AL, Oltvai ZN. Network biology: understanding the cell's functional organization. Nat Rev Genet 2004; 5(2):101-113. (Pubitemid 38160277)
-
(2004)
Nature Reviews Genetics
, vol.5
, Issue.2
, pp. 101-113
-
-
Barabasi, A.-L.1
Oltvai, Z.N.2
-
43
-
-
48949115091
-
RNA-binding proteins in human genetic disease
-
Lukong KE, Chang KW, Khandjian EW et al. RNA-binding proteins in human genetic disease. Trends Genet 2008; 24(8):416-425.
-
(2008)
Trends Genet
, vol.24
, Issue.8
, pp. 416-425
-
-
Lukong, K.E.1
Chang, K.W.2
Khandjian, E.W.3
-
45
-
-
0037678415
-
Cell-specific RNA-binding proteins in human disease
-
DOI 10.1016/S1050-1738(03)00075-6, PII S1050173803000756
-
Musunuru K. Cell-specific RNA-binding proteins in human disease. Trends Cardiovasc Med 2003; 13(5):188-195. (Pubitemid 36802022)
-
(2003)
Trends in Cardiovascular Medicine
, vol.13
, Issue.5
, pp. 188-195
-
-
Musunuru, K.1
-
46
-
-
67449084504
-
Emerging roles of RNA and RNA-binding protein network in cancer cells
-
Kim MY, Hur J, Jeong S. Emerging roles of RNA and RNA-binding protein network in cancer cells. BMB Rep 2009; 42(3):125-130.
-
(2009)
BMB Rep
, vol.42
, Issue.3
, pp. 125-130
-
-
Kim, M.Y.1
Hur, J.2
Jeong, S.3
-
47
-
-
63049091236
-
A systematic survey identifies prions and illuminates sequence features ofprionogenicproteins
-
Alberti S, Halfmann R, King O et al. A systematic survey identifies prions and illuminates sequence features ofprionogenicproteins. Cell2009; 137(1):146-158.
-
(2009)
Cell
, vol.137
, Issue.1
, pp. 146-158
-
-
Alberti, S.1
Halfmann, R.2
King, O.3
-
48
-
-
73949130070
-
Dissecting the expression dynamics of RNA-binding proteins in post-transcriptional regulatory networks
-
Mittal N, Roy N, Babu MM et al. Dissecting the expression dynamics of RNA-binding proteins in post-transcriptional regulatory networks. Proc Natl Acad Sci USA 2009; 106(48):20300-20305.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, Issue.48
, pp. 20300-20305
-
-
Mittal, N.1
Roy, N.2
Babu, M.M.3
-
49
-
-
0036529621
-
Comparative genomics and evolution of proteins involved in RNA metabolism
-
Anantharaman V, Koonin EV, Aravind L. Comparative genomics and evolution of proteins involved in RNA metabolism. Nucleic Acids Res 2002; 30(7):1427-1464. (Pubitemid 34679722)
-
(2002)
Nucleic Acids Research
, vol.30
, Issue.7
, pp. 1427-1464
-
-
Anantharaman, V.1
Koonin, E.V.2
Aravind, L.3
-
50
-
-
0842285841
-
Summing up the noise in gene networks
-
DOI 10.1038/nature02257
-
Paulsson J. Summing up the noise in gene networks. Nature 2004; 427(6973):415-418. (Pubitemid 38168488)
-
(2004)
Nature
, vol.427
, Issue.6973
, pp. 415-418
-
-
Paulsson, J.1
-
51
-
-
0033591364
-
Regulated interaction of protein kinase Cdelta with the heterogeneous nuclear ribonucleoprotein K protein
-
Schullery DS, Ostrowski J, Denisenko ON et al. Regulated interaction of protein kinase Cdelta with the heterogeneous nuclear ribonucleoprotein K protein. J Biol Chem 1999; 274(21):15101-15109.
-
(1999)
J Biol Chem
, vol.274
, Issue.21
, pp. 15101-15109
-
-
Schullery, D.S.1
Ostrowski, J.2
Denisenko, O.N.3
-
52
-
-
1942422565
-
SUMO modification of heterogeneous nuclear ribonucleoproteins
-
DOI 10.1128/MCB.24.9.3623-3632.2004
-
Vassileva MT, Matunis MJ. SUMO modification of heterogeneous nuclear ribonucleoproteins. Mol Cell Biol 2004; 24(9):3623-3632. (Pubitemid 38496143)
-
(2004)
Molecular and Cellular Biology
, vol.24
, Issue.9
, pp. 3623-3632
-
-
Vassileva, M.T.1
Matunis, M.J.2
-
53
-
-
4043129097
-
Arginine methyltransferase affects interactions and recruitment of mRNA processing and export factors
-
DOI 10.1101/gad.1223204
-
Yu MC, Bachand F, McBride AE et al. Arginine methyltransferase affects interactions and recruitment of mRNA processing and export factors. Genes Dev 2004; 18(16):2024-2035. (Pubitemid 39071583)
-
(2004)
Genes and Development
, vol.18
, Issue.16
, pp. 2024-2035
-
-
Yu, M.C.1
Bachand, F.2
McBride, A.E.3
Komili, S.4
Casolari, J.M.5
Silver, P.A.6
-
54
-
-
40449138572
-
Post-transcriptional gene regulation: From genome-wide studies to principles
-
Halbeisen RE, Galgano A, Scherrer T et al. Post-transcriptional gene regulation: from genome-wide studies to principles. Cell Mol Life Sci 2008; 65(5):798-813.
-
(2008)
Cell Mol Life Sci
, vol.65
, Issue.5
, pp. 798-813
-
-
Halbeisen, R.E.1
Galgano, A.2
Scherrer, T.3
-
55
-
-
34047245826
-
A network of multiple regulatory layers shapes gene expression infissionyeast
-
DOI 10.1016/j.molcel.2007.03.002, PII S1097276507001475
-
LacknerDH, BeilharzTH, Marguerat S et al. A network of multiple regulatory layers shapes gene expression infissionyeast. Mol Cell 2007; 26(1):145-155. (Pubitemid 46550937)
-
(2007)
Molecular Cell
, vol.26
, Issue.1
, pp. 145-155
-
-
Lackner, D.H.1
Beilharz, T.H.2
Marguerat, S.3
Mata, J.4
Watt, S.5
Schubert, F.6
Preiss, T.7
Bahler, J.8
-
56
-
-
10044282898
-
A systems view ofmRNP biology
-
Hieronymus Ft, Silver PA. A systems view ofmRNP biology. Genes Dev 2004; 18(23):2845-2860.
-
(2004)
Genes Dev
, vol.18
, Issue.23
, pp. 2845-2860
-
-
Ft, H.1
Silver, P.A.2
-
57
-
-
0037197892
-
Precision and functional specificity in mRNA decay
-
DOI 10.1073/pnas.092538799
-
Wang Y, Liu CL, Storey JD et al. Precision and functional specificity in mRNA decay. Proc Natl Acad Sci USA 2002; 99(9):5860-5865. (Pubitemid 34493230)
-
(2002)
Proceedings of the National Academy of Sciences of the United States of America
, vol.99
, Issue.9
, pp. 5860-5865
-
-
Wang, Y.1
Liu, C.L.2
Storey, J.D.3
Tibshirani, R.J.4
Herschlag, D.5
Brown, P.O.6
-
58
-
-
0037388094
-
Genome-wide analysis of mRNA translation profiles in Saccharomyces cerevisiae
-
DOI 10.1073/pnas.0635171100
-
Arava Y, Wang Y, Storey JD et al. Genome-wide analysis of mRNA translation profiles in Saccharomyces cerevisiae. Proc Natl Acad Sci USA 2003; 100(7):3889-3894. (Pubitemid 36418127)
-
(2003)
Proceedings of the National Academy of Sciences of the United States of America
, vol.100
, Issue.7
, pp. 3889-3894
-
-
Arava, Y.1
Wang, Y.2
Storey, J.D.3
Liu, C.L.4
Brown, P.O.5
Herschlag, D.6
-
59
-
-
33748377124
-
Quantification of protein half-lives in the budding yeast proteome
-
DOI 10.1073/pnas.0605420103
-
Belle A, Tanay A, Bitincka L et al. Quantification of protein half-lives in the budding yeast proteome. Proc Natl Acad Sci USA 2006; 103(35):13004-13009. (Pubitemid 44338907)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.35
, pp. 13004-13009
-
-
Belle, A.1
Tanay, A.2
Bitincka, L.3
Shamir, R.4
O'Shea, E.K.5
-
60
-
-
0142215475
-
Global analysis of protein expression in yeast
-
DOI 10.1038/nature02046
-
Ghaemmaghami S, Huh WK, Bower K et al. Global analysis of protein expression in yeast. Nature 2003; 425(6959):737-741. (Pubitemid 37314318)
-
(2003)
Nature
, vol.425
, Issue.6959
, pp. 737-741
-
-
Ghaemmaghami, S.1
Huh, W.-K.2
Bower, K.3
Howson, R.W.4
Belle, A.5
Dephoure, N.6
O'Shea, E.K.7
Weissman, J.S.8
-
61
-
-
33745220278
-
Single-cell proteomic analysis of S. cerevisiae reveals the architecture ofbiological noise
-
Newman JR, Ghaemmaghami S, Ihmels J et al. Single-cell proteomic analysis of S. cerevisiae reveals the architecture ofbiological noise. Nature 2006; 441(7095):840-846.
-
(2006)
Nature
, vol.441
, Issue.7095
, pp. 840-846
-
-
Newman, J.R.1
Ghaemmaghami, S.2
Ihmels, J.3
-
62
-
-
75549090603
-
The Pfam protein families database
-
(Database issue)
-
Finn RD, Mistry J, Tate J et al. The Pfam protein families database. Nucleic Acids Res 38(Database issue):D211-222.
-
Nucleic Acids Res
, vol.38
-
-
Finn, R.D.1
Mistry, J.2
Tate, J.3
-
64
-
-
0034710226
-
The Drosophila melanogaster genome: Translation factors and RNA binding proteins
-
Lasko P. The drosophila melanogaster genome: translation factors and RNA binding proteins. J Cell Biol 2000; 150(2):F51-56. (Pubitemid 30491346)
-
(2000)
Journal of Cell Biology
, vol.150
, Issue.2
-
-
Lasko, P.1
-
65
-
-
24344452361
-
A genome-wide in situ hybridization map of RNA-binding proteins reveals anatomically restricted expression in the developing mouse brain
-
McKee AE, Minet E, Stern C et al. A genome-wide in situ hybridization map of RNA-binding proteins reveals anatomically restricted expression in the developing mouse brain. BMC Dev Biol 2005; 5:14.
-
(2005)
BMC Dev Biol
, vol.5
, pp. 14
-
-
McKee, A.E.1
Minet, E.2
Stern, C.3
-
66
-
-
33751247876
-
Post-Transcription meets postgenomic: The saga of RNA binding proteins in a new era
-
Sanchez-Diaz P, Penalva LO. Post-Transcription meets postgenomic: the saga of RNA binding proteins in a new era. RNA Biol 2006; 3(3):101-109.
-
(2006)
RNA Biol
, vol.3
, Issue.3
, pp. 101-109
-
-
Sanchez-Diaz, P.1
Penalva, L.O.2
-
67
-
-
67650484984
-
Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins
-
Ray D, Kazan H, Chan ET et al. Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins. Nat Biotechnol 2009; 27(7):667-670.
-
(2009)
Nat Biotechnol
, vol.27
, Issue.7
, pp. 667-670
-
-
Ray, D.1
Kazan, H.2
Chan, E.T.3
-
69
-
-
0035544770
-
SERF: In vitro selection of random RNA fragments to identify protein binding sites within large RNAs
-
DOI 10.1006/meth.2001.1247
-
Stelzl U, Nierhaus KH. SERF: in vitro election of random RNA fragments to identify protein binding sites within large RNAs. Methods 2001; 25(3):351-357. (Pubitemid 34183559)
-
(2001)
Methods
, vol.25
, Issue.3
, pp. 351-357
-
-
Stelzl, U.1
Nierhaus, K.H.2
-
71
-
-
0036354776
-
Identifying mRNAs bound by RNA-binding proteins using affinity purification and differential display
-
DOI 10.1016/S1046-2023(02)00014-2, PII S1046202302000142
-
Rodgers ND, Jiao X, Kiledjian M. Identifying mRNAs bound by RNA-binding proteins using affinity purification and differential display. Methods 2002; 26(2):115-122. (Pubitemid 34969573)
-
(2002)
Methods
, vol.26
, Issue.2
, pp. 115-122
-
-
Rodgers, N.D.1
Jiao, X.2
Kiledjian, M.3
-
72
-
-
67649774581
-
Unbiased RNA-protein interaction screen by quantitative proteomics
-
Butter F, Scheibe M, Morl M et al. Unbiased RNA-protein interaction screen by quantitative proteomics. Proc Natl Acad Sci USA 2009; 106(26):10626-10631.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, Issue.26
, pp. 10626-10631
-
-
Butter, F.1
Scheibe, M.2
Morl, M.3
|