-
1
-
-
0036208832
-
Patterns of linkage disequilibrium in the human genome
-
Ardlie, K. G., Kruglyak, L. & Seielstad, M. (2002) Patterns of linkage disequilibrium in the human genome. Nat Rev Genet 3, 299-309.
-
(2002)
Nat Rev Genet
, vol.3
, pp. 299-309
-
-
Ardlie, K.G.1
Kruglyak, L.2
Seielstad, M.3
-
2
-
-
66049132908
-
Global distribution of genomic diversity underscores rich complex history of continental human populations
-
Auton, A., Bryc, K., Boyko, A. R., Lohmueller, K. E., Novembre, J., Reynolds, A., Indap, A., Wright, M. H., Degenhardt, J. D., Gutenkunst, R. N., King, K. S., Nelson, M. R. & Bustamante, C. D. (2009) Global distribution of genomic diversity underscores rich complex history of continental human populations. Genome Res 19, 795-803.
-
(2009)
Genome Res
, vol.19
, pp. 795-803
-
-
Auton, A.1
Bryc, K.2
Boyko, A.R.3
Lohmueller, K.E.4
Novembre, J.5
Reynolds, A.6
Indap, A.7
Wright, M.H.8
Degenhardt, J.D.9
Gutenkunst, R.N.10
King, K.S.11
Nelson, M.R.12
Bustamante, C.D.13
-
3
-
-
0014082615
-
Phylogenetic analysis. Models and estimation procedures
-
Cavalli-Sforza, L. L. & Edwards, A. W. (1967) Phylogenetic analysis. Models and estimation procedures. Am J Hum Genet 19 (Suppl 19), 233-257.
-
(1967)
Am J Hum Genet
, vol.19
, Issue.SUPPL. 19
, pp. 233-257
-
-
Cavalli-Sforza, L.L.1
Edwards, A.W.2
-
4
-
-
0037739218
-
Reconstruction of human evolution: Bringing together genetic, archaeological, and linguistic data
-
Cavalli-Sforza, L. L., Piazza, A., Menozzi, P. & Mountain, J. (1988) Reconstruction of human evolution: Bringing together genetic, archaeological, and linguistic data. Proc Natl Acad Sci USA, 85, 6002-6006.
-
(1988)
Proc Natl Acad Sci USA
, vol.85
, pp. 6002-6006
-
-
Cavalli-Sforza, L.L.1
Piazza, A.2
Menozzi, P.3
Mountain, J.4
-
5
-
-
33750444621
-
A worldwide survey of haplotype variation and linkage disequilibrium in the human genome
-
Conrad, D. F., Jakobsson, M., Coop, G., Wen, X., Wall, J. D., Rosenberg, N. A. & Pritchard, J. K. (2006) A worldwide survey of haplotype variation and linkage disequilibrium in the human genome. Nat Genet 38, 1251-1260.
-
(2006)
Nat Genet
, vol.38
, pp. 1251-1260
-
-
Conrad, D.F.1
Jakobsson, M.2
Coop, G.3
Wen, X.4
Wall, J.D.5
Rosenberg, N.A.6
Pritchard, J.K.7
-
6
-
-
34547662977
-
Gene order and recombination rate in homologous chromosome regions of the chicken and a passerine bird
-
Dawson, D. A., Akesson, M., Burke, T., Pemberton, J. M., Slate, J. & Hansson, B. (2007) Gene order and recombination rate in homologous chromosome regions of the chicken and a passerine bird. Mol Biol Evol 24, 1537-1552.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1537-1552
-
-
Dawson, D.A.1
Akesson, M.2
Burke, T.3
Pemberton, J.M.4
Slate, J.5
Hansson, B.6
-
7
-
-
0029150074
-
A comparison of linkage disequilibrium measures for fine-scale mapping
-
Devlin, B. & Risch, N. (1995) A comparison of linkage disequilibrium measures for fine-scale mapping. Genomics 29, 311-322.
-
(1995)
Genomics
, vol.29
, pp. 311-322
-
-
Devlin, B.1
Risch, N.2
-
8
-
-
0015808083
-
Maximum-likelihood estimation of evolutionary trees from continuous characters
-
Felsenstein, J. (1973) Maximum-likelihood estimation of evolutionary trees from continuous characters. Am J Hum Genet 25, 471-492.
-
(1973)
Am J Hum Genet
, vol.25
, pp. 471-492
-
-
Felsenstein, J.1
-
9
-
-
0000122573
-
PHYLIP-Phylogeny Inference Package (Version 3.2)
-
Felsenstein, J. (1989) PHYLIP-Phylogeny Inference Package (Version 3.2). Cladistics 5, 164-166.
-
(1989)
Cladistics
, vol.5
, pp. 164-166
-
-
Felsenstein, J.1
-
10
-
-
38949170720
-
The genetic structure of Pacific Islanders
-
Friedlaender, J. S., Friedlaender, F. R., Reed, F. A., Kidd, K. K., Kidd, J. R., Chambers, G. K., Lea, R. A., Loo, J. H., Koki, G., Hodgson, J. A., Merriwether, D. A. & Weber, J. L. (2008) The genetic structure of Pacific Islanders. PLoS Genet 4, 173-190.
-
(2008)
PLoS Genet
, vol.4
, pp. 173-190
-
-
Friedlaender, J.S.1
Friedlaender, F.R.2
Reed, F.A.3
Kidd, K.K.4
Kidd, J.R.5
Chambers, G.K.6
Lea, R.A.7
Loo, J.H.8
Koki, G.9
Hodgson, J.A.10
Merriwether, D.A.11
Weber, J.L.12
-
11
-
-
18444369013
-
The structure of haplotype blocks in the human genome
-
Gabriel, S. B., Schaffner, S. F., Nguyen, H., Moore, J. M., Roy, J., Blumenstiel, B., Higgins, J., Defelice, M., Lochner, A., Faggart, M., Liu-Cordero, S. N., Rotimi, C., Adeyemo, A., Cooper, R., Ward, R., Lander, E. S., Daly, M. J. & Altshuler, D. (2002) The structure of haplotype blocks in the human genome. Science 296, 2225-2229.
-
(2002)
Science
, vol.296
, pp. 2225-2229
-
-
Gabriel, S.B.1
Schaffner, S.F.2
Nguyen, H.3
Moore, J.M.4
Roy, J.5
Blumenstiel, B.6
Higgins, J.7
Defelice, M.8
Lochner, A.9
Faggart, M.10
Liu-Cordero, S.N.11
Rotimi, C.12
Adeyemo, A.13
Cooper, R.14
Ward, R.15
Lander, E.S.16
Daly, M.J.17
Altshuler, D.18
-
12
-
-
18544404720
-
Covariation in frequencies of substitution, deletion, transposition, and recombination during eutherian evolution
-
Hardison, R. C., Roskin, K. M., Yang, S., Diekhans, M., Kent, W. J., Weber, R., Elnitski, L., Li, J., O'connor, M., Kolbe, D., Schwartz, S., Furey, T. S., Whelan, S., Goldman, N., Smit, A., Miller, W., Chiaromonte, F. & Haussler, D. (2003) Covariation in frequencies of substitution, deletion, transposition, and recombination during eutherian evolution. Genome Res 13, 13-26.
-
(2003)
Genome Res
, vol.13
, pp. 13-26
-
-
Hardison, R.C.1
Roskin, K.M.2
Yang, S.3
Diekhans, M.4
Kent, W.J.5
Weber, R.6
Elnitski, L.7
Li, J.8
O'connor, M.9
Kolbe, D.10
Schwartz, S.11
Furey, T.S.12
Whelan, S.13
Goldman, N.14
Smit, A.15
Miller, W.16
Chiaromonte, F.17
Haussler, D.18
-
13
-
-
44949241466
-
Inferring human colonization history using a copying model
-
Hellenthal, G., Auton, A. & Falush, D. (2008) Inferring human colonization history using a copying model. PLoS Genet 4, 1-11.
-
(2008)
PLoS Genet
, vol.4
, pp. 1-11
-
-
Hellenthal, G.1
Auton, A.2
Falush, D.3
-
14
-
-
0038015586
-
A neutral explanation for the correlation of diversity with recombination rates in humans
-
Hellmann, I., Ebersberger, I., Ptak, S. E., Paabo, S. & Przeworski, M. (2003) A neutral explanation for the correlation of diversity with recombination rates in humans. Am J Hum Genet 72, 1527-1535.
-
(2003)
Am J Hum Genet
, vol.72
, pp. 1527-1535
-
-
Hellmann, I.1
Ebersberger, I.2
Ptak, S.E.3
Paabo, S.4
Przeworski, M.5
-
15
-
-
24344455529
-
Why do human diversity levels vary at a megabase scale?
-
Hellmann, I., Prufer, K., Ji, H., Zody, M. C., Paabo, S. & Ptak, S. E. (2005) Why do human diversity levels vary at a megabase scale? Genome Res 15, 1222-1231.
-
(2005)
Genome Res
, vol.15
, pp. 1222-1231
-
-
Hellmann, I.1
Prufer, K.2
Ji, H.3
Zody, M.C.4
Paabo, S.5
Ptak, S.E.6
-
16
-
-
0037803577
-
The study of structured populations-new hope for a difficult and divided science
-
Hey, J. & Machado, C. A. (2003) The study of structured populations-new hope for a difficult and divided science. Nat Rev Genet 4, 535-543.
-
(2003)
Nat Rev Genet
, vol.4
, pp. 535-543
-
-
Hey, J.1
Machado, C.A.2
-
17
-
-
0028298036
-
Maximum-likelihood estimation of gene location by linkage disequilibrium
-
Hill, W. G. & Weir, B. S. (1994) Maximum-likelihood estimation of gene location by linkage disequilibrium. Am J Hum Genet 54, 705-714.
-
(1994)
Am J Hum Genet
, vol.54
, pp. 705-714
-
-
Hill, W.G.1
Weir, B.S.2
-
18
-
-
31944450654
-
Linkage disequilibrium sharing and haplotype-tagged SNP portability between populations
-
Huang, W., He, Y., Wang, H., Wang, Y., Liu, Y., Wang, Y., Chu, X., Wang, Y., Xu, L., Shen, Y., Xiong, X., Li, H., Wen, B., Qian, J., Yuan, W., Zhang, C., Wang, Y., Jiang, H., Zhao, G., Chen, Z. & Jin, L. (2006) Linkage disequilibrium sharing and haplotype-tagged SNP portability between populations. Proc Natl Acad Sci USA 103, 1418-1421.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 1418-1421
-
-
Huang, W.1
He, Y.2
Wang, H.3
Wang, Y.4
Liu, Y.5
Wang, Y.6
Chu, X.7
Wang, Y.8
Xu, L.9
Shen, Y.10
Xiong, X.11
Li, H.12
Wen, B.13
Qian, J.14
Yuan, W.15
Zhang, C.16
Wang, Y.17
Jiang, H.18
Zhao, G.19
Chen, Z.20
Jin, L.21
more..
-
19
-
-
39749197456
-
Genotype, haplotype and copy-number variation in worldwide human populations
-
Jakobsson, M., Scholz, S. W., Scheet, P., Gibbs, J. R., Vanliere, J. M., Fung, H. C., Szpiech, Z. A., Degnan, J. H., Wang, K., Guerreiro, R., Bras, J. M., Schymick, J. C., Hernandez, D. G., Traynor, B. J., Simon-Sanchez, J., Matarin, M., Britton, A., Van De Leemput, J., Rafferty, I., Bucan, M., Cann, H. M., Hardy, J. A., Rosenberg, N. A. & Singleton, A. B. (2008) Genotype, haplotype and copy-number variation in worldwide human populations. Nature 451, 998-1003.
-
(2008)
Nature
, vol.451
, pp. 998-1003
-
-
Jakobsson, M.1
Scholz, S.W.2
Scheet, P.3
Gibbs, J.R.4
Vanliere, J.M.5
Fung, H.C.6
Szpiech, Z.A.7
Degnan, J.H.8
Wang, K.9
Guerreiro, R.10
Bras, J.M.11
Schymick, J.C.12
Hernandez, D.G.13
Traynor, B.J.14
Simon-Sanchez, J.15
Matarin, M.16
Britton, A.17
Van De Leemput, J.18
Rafferty, I.19
Bucan, M.20
Cann, H.M.21
Hardy, J.A.22
Rosenberg, N.A.23
Singleton, A.B.24
more..
-
20
-
-
0034795550
-
Intensely punctate meiotic recombination in the class II region of the major histocompatibility complex
-
Jeffreys, A. J., Kauppi, L. & Neumann, R. (2001) Intensely punctate meiotic recombination in the class II region of the major histocompatibility complex. Nat Genet 29, 217-222.
-
(2001)
Nat Genet
, vol.29
, pp. 217-222
-
-
Jeffreys, A.J.1
Kauppi, L.2
Neumann, R.3
-
21
-
-
1842717957
-
Comparative recombination rates in the rat, mouse, and human genomes
-
Jensen-Seaman, M. I., Furey, T. S., Payseur, B. A., Lu, Y., Roskin, K. M., Chen, C. F., Thomas, M. A., Haussler, D. & Jacob, H. J. (2004) Comparative recombination rates in the rat, mouse, and human genomes. Genome Res 14, 528-38.
-
(2004)
Genome Res
, vol.14
, pp. 528-538
-
-
Jensen-Seaman, M.I.1
Furey, T.S.2
Payseur, B.A.3
Lu, Y.4
Roskin, K.M.5
Chen, C.F.6
Thomas, M.A.7
Haussler, D.8
Jacob, H.J.9
-
22
-
-
0042766533
-
The human Y chromosome: An evolutionary marker comes of age
-
Jobling, M. A. & Tyler-Smith, C. (2003) The human Y chromosome: An evolutionary marker comes of age. Nat Rev Genet 4, 598-612.
-
(2003)
Nat Rev Genet
, vol.4
, pp. 598-612
-
-
Jobling, M.A.1
Tyler-Smith, C.2
-
23
-
-
0028894185
-
Linkage disequilibrium as a gene-mapping tool
-
Jorde, L. B. (1995) Linkage disequilibrium as a gene-mapping tool. Am J Hum Genet 56, 11-14.
-
(1995)
Am J Hum Genet
, vol.56
, pp. 11-14
-
-
Jorde, L.B.1
-
24
-
-
38749119431
-
Genome-wide analysis indicates more Asian than Melanesian ancestry of Polynesians
-
Kayser, M., Lao, O., Saar, K., Brauer, S., Wang, X., Nurnberg, P., Trent, R. J. & Stoneking, M. (2008) Genome-wide analysis indicates more Asian than Melanesian ancestry of Polynesians. Am J Hum Genet 82, 194-198.
-
(2008)
Am J Hum Genet
, vol.82
, pp. 194-198
-
-
Kayser, M.1
Lao, O.2
Saar, K.3
Brauer, S.4
Wang, X.5
Nurnberg, P.6
Trent, R.J.7
Stoneking, M.8
-
25
-
-
0036640951
-
Human SNP variability and mutation rate are higher in regions of high recombination
-
Lercher, M. J. & Hurst, L. D. (2002) Human SNP variability and mutation rate are higher in regions of high recombination. Trends Genet 18, 337-340.
-
(2002)
Trends Genet
, vol.18
, pp. 337-340
-
-
Lercher, M.J.1
Hurst, L.D.2
-
26
-
-
0000356980
-
The interaction of selection and linkage. Part II. Optimum Models
-
Lewontin, R. C. (1964) The interaction of selection and linkage. Part II. Optimum Models. Genetics 50, 757-782.
-
(1964)
Genetics
, vol.50
, pp. 757-782
-
-
Lewontin, R.C.1
-
27
-
-
39749181521
-
Worldwide human relationships inferred from genome-wide patterns of variation
-
Li, J. Z., Absher, D. M., Tang, H., Southwick, A. M., Casto, A. M., Ramachandran, S., Cann, H. M., Barsh, G. S., Feldman, M., Cavalli-Sforza, L. L. & Myers, R. M. (2008) Worldwide human relationships inferred from genome-wide patterns of variation. Science 319, 1100-1104.
-
(2008)
Science
, vol.319
, pp. 1100-1104
-
-
Li, J.Z.1
Absher, D.M.2
Tang, H.3
Southwick, A.M.4
Casto, A.M.5
Ramachandran, S.6
Cann, H.M.7
Barsh, G.S.8
Feldman, M.9
Cavalli-Sforza, L.L.10
Myers, R.M.11
-
28
-
-
0347361674
-
Modeling linkage disequilibrium and identifying recombination hotspots using single-nucleotide polymorphism data
-
Li, N. & Stephens, M. (2003) Modeling linkage disequilibrium and identifying recombination hotspots using single-nucleotide polymorphism data. Genetics 165, 2213-2233.
-
(2003)
Genetics
, vol.165
, pp. 2213-2233
-
-
Li, N.1
Stephens, M.2
-
29
-
-
67749125023
-
Methods for human demographic inference using haplotype patterns from genomewide single-nucleotide polymorphism data
-
Lohmueller, K. E., Bustamante, C. D. & Clark, A. G. (2009) Methods for human demographic inference using haplotype patterns from genomewide single-nucleotide polymorphism data. Genetics 182, 217-231.
-
(2009)
Genetics
, vol.182
, pp. 217-231
-
-
Lohmueller, K.E.1
Bustamante, C.D.2
Clark, A.G.3
-
30
-
-
2142773942
-
The fine-scale structure of recombination rate variation in the human genome
-
McVean, G. A., Myers, S. R., Hunt, S., Deloukas, P., Bentley, D. R. & Donnelly, P. (2004) The fine-scale structure of recombination rate variation in the human genome. Science 304, 581-584.
-
(2004)
Science
, vol.304
, pp. 581-584
-
-
McVean, G.A.1
Myers, S.R.2
Hunt, S.3
Deloukas, P.4
Bentley, D.R.5
Donnelly, P.6
-
31
-
-
0020654990
-
Multiple DNA fragment polymorphisms associated with immunoglobulin mu chain switch-like regions in man
-
Migone, N., Feder, J., Cann, H., Van West, B., Hwang, J., Takahashi, N., Honjo, T., Piazza, A. & Cavalli-Sforza, L. L. (1983) Multiple DNA fragment polymorphisms associated with immunoglobulin mu chain switch-like regions in man. Proc Natl Acad Sci USA 80, 467-471.
-
(1983)
Proc Natl Acad Sci USA
, vol.80
, pp. 467-471
-
-
Migone, N.1
Feder, J.2
Cann, H.3
Van West, B.4
Hwang, J.5
Takahashi, N.6
Honjo, T.7
Piazza, A.8
Cavalli-Sforza, L.L.9
-
32
-
-
26844482093
-
A fine-scale map of recombination rates and hotspots across the human genome
-
Myers, S., Bottolo, L., Freeman, C., Mcvean, G. & Donnelly, P. (2005) A fine-scale map of recombination rates and hotspots across the human genome. Science 310, 321-324.
-
(2005)
Science
, vol.310
, pp. 321-324
-
-
Myers, S.1
Bottolo, L.2
Freeman, C.3
Mcvean, G.4
Donnelly, P.5
-
33
-
-
0035451450
-
Single nucleotide polymorphisms and recombination rate in humans
-
Nachman, M. W. (2001) Single nucleotide polymorphisms and recombination rate in humans. Trends Genet 17, 481-485.
-
(2001)
Trends Genet
, vol.17
, pp. 481-485
-
-
Nachman, M.W.1
-
34
-
-
0031770039
-
DNA variability and recombination rates at X-linked loci in humans
-
Nachman, M. W., Bauer, V. L., Crowell, S. L. & Aquadro, C. F. (1998) DNA variability and recombination rates at X-linked loci in humans. Genetics 150, 1133-1141.
-
(1998)
Genetics
, vol.150
, pp. 1133-1141
-
-
Nachman, M.W.1
Bauer, V.L.2
Crowell, S.L.3
Aquadro, C.F.4
-
35
-
-
0000655270
-
Genetic distance between populations
-
Nei, M. (1972) Genetic distance between populations. Am Nat 106, 283-292.
-
(1972)
Am Nat
, vol.106
, pp. 283-292
-
-
Nei, M.1
-
36
-
-
0020965531
-
Accuracy of estimated phylogenetic trees from molecular data. II. Gene frequency data
-
Nei, M., Tajima, F. & Tateno, Y. (1983) Accuracy of estimated phylogenetic trees from molecular data. II. Gene frequency data. J Mol Evol 19, 153-170.
-
(1983)
J Mol Evol
, vol.19
, pp. 153-170
-
-
Nei, M.1
Tajima, F.2
Tateno, Y.3
-
37
-
-
31544473725
-
The relationship of nucleotide polymorphism, recombination rate and selection in wild tomato species
-
Roselius, K., Stephan, W. & Stadler, T. (2005) The relationship of nucleotide polymorphism, recombination rate and selection in wild tomato species. Genetics 171, 753-763.
-
(2005)
Genetics
, vol.171
, pp. 753-763
-
-
Roselius, K.1
Stephan, W.2
Stadler, T.3
-
38
-
-
33750437374
-
Clines, clusters, and the effect of study design on the inference of human population structure
-
Rosenberg, N. A., Mahajan, S., Ramachandran, S., Zhao, C., Pritchard, J. K. & Feldman, M. W. (2005) Clines, clusters, and the effect of study design on the inference of human population structure. PLoS Genet 1, 660-671.
-
(2005)
PLoS Genet
, vol.1
, pp. 660-671
-
-
Rosenberg, N.A.1
Mahajan, S.2
Ramachandran, S.3
Zhao, C.4
Pritchard, J.K.5
Feldman, M.W.6
-
39
-
-
0037147189
-
Genetic structure of human populations
-
Rosenberg, N. A., Pritchard, J. K., Weber, J. L., Cann, H. M., Kidd, K. K., Zhivotovsky, L. A. & Feldman, M. W. (2002) Genetic structure of human populations. Science 298, 2381-2385.
-
(2002)
Science
, vol.298
, pp. 2381-2385
-
-
Rosenberg, N.A.1
Pritchard, J.K.2
Weber, J.L.3
Cann, H.M.4
Kidd, K.K.5
Zhivotovsky, L.A.6
Feldman, M.W.7
-
40
-
-
0035865322
-
A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms
-
Sachidanandam, R., Weissman, D., Schmidt, S. C., Kakol, J. M., Stein, L. D., Marth, G., Sherry, S., Mullikin, J. C., Mortimore, B. J., Willey, D. L., Hunt, S. E., Cole, C. G., Coggill, P. C., Rice, C. M., Ning, Z., Rogers, J., Bentley, D. R., Kwok, P. Y., Mardis, E. R., Yeh, R. T., Schultz, B., Cook, L., Davenport, R., Dante, M., Fulton, L., Hillier, L., Waterston, R. H., Mcpherson, J. D., Gilman, B., Schaffner, S., Van Etten, W. J., Reich, D., Higgins, J., Daly, M. J., Blumenstiel, B., Baldwin, J., Stange-Thomann, N., Zody, M. C., Linton, L., Lander, E. S. & Altshuler, D. (2001) A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms. Nature 409, 928-933.
-
(2001)
Nature
, vol.409
, pp. 928-933
-
-
Sachidanandam, R.1
Weissman, D.2
Schmidt, S.C.3
Kakol, J.M.4
Stein, L.D.5
Marth, G.6
Sherry, S.7
Mullikin, J.C.8
Mortimore, B.J.9
Willey, D.L.10
Hunt, S.E.11
Cole, C.G.12
Coggill, P.C.13
Rice, C.M.14
Ning, Z.15
Rogers, J.16
Bentley, D.R.17
Kwok, P.Y.18
Mardis, E.R.19
Yeh, R.T.20
Schultz, B.21
Cook, L.22
Davenport, R.23
Dante, M.24
Fulton, L.25
Hillier, L.26
Waterston, R.H.27
Mcpherson, J.D.28
Gilman, B.29
Schaffner, S.30
Van Etten, W.J.31
Reich, D.32
Higgins, J.33
Daly, M.J.34
Blumenstiel, B.35
Baldwin, J.36
Stange-Thomann, N.37
Zody, M.C.38
Linton, L.39
Lander, E.S.40
Altshuler, D.41
more..
-
41
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou, N. & Nei, M. (1987) The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
-
(1987)
Mol Biol Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
42
-
-
33644974019
-
A fast and flexible statistical model for large-scale population genotype data: Applications to inferring missing genotypes and haplotypic phase
-
Scheet, P. & Stephens, M. (2006) A fast and flexible statistical model for large-scale population genotype data: Applications to inferring missing genotypes and haplotypic phase. Am J Hum Genet 78, 629-644.
-
(2006)
Am J Hum Genet
, vol.78
, pp. 629-644
-
-
Scheet, P.1
Stephens, M.2
-
43
-
-
0141972861
-
Arlequin: A software for population genetics data analysis. Ver 2.000
-
University of Geneva
-
Schneider, S., Roessli, D. & Excoffier, L. (2000) Arlequin: A software for population genetics data analysis. Ver 2.000. Genetics and Biometry Lab, Department of Anthropology, University of Geneva .
-
(2000)
Genetics and Biometry Lab, Department of Anthropology
-
-
Schneider, S.1
Roessli, D.2
Excoffier, L.3
-
44
-
-
0242691208
-
A comparison of Bayesian methods for haplotype reconstruction from population genotype data
-
Stephens, M. & Donnelly, P. (2003) A comparison of Bayesian methods for haplotype reconstruction from population genotype data. Am J Hum Genet 73, 1162-1169.
-
(2003)
Am J Hum Genet
, vol.73
, pp. 1162-1169
-
-
Stephens, M.1
Donnelly, P.2
-
45
-
-
0035071957
-
A new statistical method for haplotype reconstruction from population data
-
Stephens, M., Smith, N. J. & Donnelly, P. (2001) A new statistical method for haplotype reconstruction from population data. Am J Hum Genet 68, 978-989.
-
(2001)
Am J Hum Genet
, vol.68
, pp. 978-989
-
-
Stephens, M.1
Smith, N.J.2
Donnelly, P.3
-
46
-
-
34547781750
-
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
-
Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
47
-
-
72149083621
-
Mapping Human Genetic Diversity in Asia
-
The Hugo Pan-Asian SNP Consortium () .
-
The Hugo Pan-Asian SNP Consortium (2009) Mapping Human Genetic Diversity in Asia. Science 326, 1541-1545.
-
(2009)
Science
, vol.326
, pp. 1541-1545
-
-
-
48
-
-
79959503826
-
The International HapMap Project
-
The International HapMap Consortium () .
-
The International HapMap Consortium (2003) The International HapMap Project. Nature 426, 789-96.
-
(2003)
Nature
, vol.426
, pp. 789-796
-
-
-
49
-
-
79959524146
-
A haplotype map of the human genome
-
The International HapMap Consortium () .
-
The International HapMap Consortium (2005) A haplotype map of the human genome. Nature 437, 1299-1320.
-
(2005)
Nature
, vol.437
, pp. 1299-1320
-
-
-
50
-
-
35348983887
-
A second generation human haplotype map of over 3.1 million SNPs
-
The International HapMap Consortium () .
-
The International HapMap Consortium (2007) A second generation human haplotype map of over 3.1 million SNPs. Nature 449, 851-861.
-
(2007)
Nature
, vol.449
, pp. 851-861
-
-
-
51
-
-
0033762701
-
Y chromosome sequence variation and the history of human populations
-
Underhill, P. A., Shen, P., Lin, A. A., Jin, L., Passarino, G., Yang, W. H., Kauffman, E., Bonne-Tamir, B., Bertranpetit, J., Francalacci, P., Ibrahim, M., Jenkins, T., Kidd, J. R., Mehdi, S. Q., Seielstad, M. T., Wells, R. S., Piazza, A., Davis, R. W., Feldman, M. W., Cavalli-Sforza, L. L. & Oefner, P. J. (2000) Y chromosome sequence variation and the history of human populations. Nat Genet 26, 358-361.
-
(2000)
Nat Genet
, vol.26
, pp. 358-361
-
-
Underhill, P.A.1
Shen, P.2
Lin, A.A.3
Jin, L.4
Passarino, G.5
Yang, W.H.6
Kauffman, E.7
Bonne-Tamir, B.8
Bertranpetit, J.9
Francalacci, P.10
Ibrahim, M.11
Jenkins, T.12
Kidd, J.R.13
Mehdi, S.Q.14
Seielstad, M.T.15
Wells, R.S.16
Piazza, A.17
Davis, R.W.18
Feldman, M.W.19
Cavalli-Sforza, L.L.20
Oefner, P.J.21
more..
-
52
-
-
0026046333
-
African populations and the evolution of human mitochondrial DNA
-
Vigilant, L., Stoneking, M., Harpending, H., Hawkes, K. & Wilson, A. C. (1991) African populations and the evolution of human mitochondrial DNA. Science 253, 1503-1507.
-
(1991)
Science
, vol.253
, pp. 1503-1507
-
-
Vigilant, L.1
Stoneking, M.2
Harpending, H.3
Hawkes, K.4
Wilson, A.C.5
-
53
-
-
0032833421
-
Mitochondrial DNA variation in human evolution and disease
-
Wallace, D. C., Brown, M. D. & Lott, M. T. (1999) Mitochondrial DNA variation in human evolution and disease. Gene 238, 211-230.
-
(1999)
Gene
, vol.238
, pp. 211-230
-
-
Wallace, D.C.1
Brown, M.D.2
Lott, M.T.3
-
54
-
-
0036957370
-
Estimating F-statistics
-
Weir, B. S. & Hill, W. G. (2002) Estimating F-statistics. Annu Rev Genet 36, 721-750.
-
(2002)
Annu Rev Genet
, vol.36
, pp. 721-750
-
-
Weir, B.S.1
Hill, W.G.2
-
55
-
-
41649083148
-
Analysis of genomic admixture in Uyghur and its implication in mapping strategy
-
Xu, S., Huang, W., Qian, J. & Jin, L. (2008) Analysis of genomic admixture in Uyghur and its implication in mapping strategy. Am J Hum Genet 82, 883-894.
-
(2008)
Am J Hum Genet
, vol.82
, pp. 883-894
-
-
Xu, S.1
Huang, W.2
Qian, J.3
Jin, L.4
-
56
-
-
34548462927
-
Dissecting linkage disequilibrium in african-american genomes: Roles of markers and individuals
-
Xu, S., Huang, W., Wang, H., He, Y., Wang, Y., Wang, Y., Qian, J., Xiong, M. & Jin, L. (2007) Dissecting linkage disequilibrium in african-american genomes: Roles of markers and individuals. Mol Biol Evol 24, 2049-2058.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 2049-2058
-
-
Xu, S.1
Huang, W.2
Wang, H.3
He, Y.4
Wang, Y.5
Wang, Y.6
Qian, J.7
Xiong, M.8
Jin, L.9
-
57
-
-
51149090386
-
A genome-wide analysis of admixture in Uyghurs and a high-density admixture map for disease-gene discovery
-
Xu, S. & Jin, L. (2008) A genome-wide analysis of admixture in Uyghurs and a high-density admixture map for disease-gene discovery. Am J Hum Genet 83, 322-336.
-
(2008)
Am J Hum Genet
, vol.83
, pp. 322-336
-
-
Xu, S.1
Jin, L.2
-
58
-
-
70349931488
-
Haplotype-sharing analysis showing Uyghurs are unlikely genetic donors
-
Xu, S., Jin, W. & Jin, L. (2009) Haplotype-sharing analysis showing Uyghurs are unlikely genetic donors. Mol Biol Evol 26, 2197-2206.
-
(2009)
Mol Biol Evol
, vol.26
, pp. 2197-2206
-
-
Xu, S.1
Jin, W.2
Jin, L.3
-
59
-
-
78650448410
-
PEAS V1.0: A package for elementary analysis of SNP data
-
Xu, S., Gupta, S. & Jin, L. (2010) PEAS V1.0: A package for elementary analysis of SNP data. Molecular Ecology Resources 10, 1085-1088.
-
(2010)
Molecular Ecology Resources
, vol.10
, pp. 1085-1088
-
-
Xu, S.1
Gupta, S.2
Jin, L.3
|