-
3
-
-
0001771498
-
Evolution in Mendelian populations
-
Wright, S. Evolution in Mendelian populations. Genetics 16, 97-159 (1931). The first paper to mathematically address the effects of population structure on patterns of genetic variation.
-
(1931)
Genetics
, vol.16
, pp. 97-159
-
-
Wright, S.1
-
5
-
-
0031018637
-
Estimating ancestral population parameters
-
Wakeley, J. & Hey, J. Estimating ancestral population parameters. Genetics 145, 847-855 (1997).
-
(1997)
Genetics
, vol.145
, pp. 847-855
-
-
Wakeley, J.1
Hey, J.2
-
6
-
-
0032736182
-
Nonequilibrium migration in human history
-
Wakeley, J. Nonequilibrium migration in human history, Genetics 153, 1863-1871 (1999).
-
(1999)
Genetics
, vol.153
, pp. 1863-1871
-
-
Wakeley, J.1
-
7
-
-
0000392112
-
Isolation by distance in equilibrium and non-equilibrium populations
-
Slatkin, M. Isolation by distance in equilibrium and non-equilibrium populations. Evolution 47, 264-279 (1993).
-
(1993)
Evolution
, vol.47
, pp. 264-279
-
-
Slatkin, M.1
-
8
-
-
0031884416
-
Delayed maturation in temporally structured populations with non-equilibrium dynamics
-
Van Dooren, T. J. M. & Metz, J. A. J. Delayed maturation in temporally structured populations with non-equilibrium dynamics. J. Evol. Biol. 11, 41-62 (1998).
-
(1998)
J. Evol. Biol.
, vol.11
, pp. 41-62
-
-
Van Dooren, T.J.M.1
Metz, J.A.J.2
-
9
-
-
0023496815
-
Intraspecific phylogeography: The mitochondrial-DNA bridge between population genetics and systematics
-
Avise, J. C. et al. Intraspecific phylogeography: the mitochondrial-DNA bridge between population genetics and systematics. Annu. Rev. Ecol. Syst. 18, 489-522 (1987). This review paper marks the birth of phylogeography.
-
(1987)
Annu. Rev. Ecol. Syst.
, vol.18
, pp. 489-522
-
-
Avise, J.C.1
-
10
-
-
0004187047
-
-
Harvard Univ. Press, Cambridge, Massachusetts
-
Avise, J. C. Phylogeography (Harvard Univ. Press, Cambridge, Massachusetts, 2000).
-
(2000)
Phylogeography
-
-
Avise, J.C.1
-
11
-
-
0000510472
-
Comparative phylogeography: Concepts and applications
-
Bermingham, E. & Mortiz, C. Comparative phylogeography: concepts and applications. Mol. Evol. 7, 367-369 (1998).
-
(1998)
Mol. Evol.
, vol.7
, pp. 367-369
-
-
Bermingham, E.1
Mortiz, C.2
-
12
-
-
33845412091
-
The coalescent
-
Kingman, J. F. C. The coalescent. Stoch. Proc. Appl. 13, 235-248 (1982). The original mathematical description of the coalescent theory.
-
(1982)
Stoch. Proc. Appl.
, vol.13
, pp. 235-248
-
-
Kingman, J.F.C.1
-
13
-
-
0001935493
-
-
eds Futuyma, D. & Antonovics, J., Oxford Univ. Press, New York
-
Hudson, R. R. in Oxford Surveys in Evolutionary Biology (eds Futuyma, D. & Antonovics, J.) 1-44 (Oxford Univ. Press, New York, 1990). A comprehensive review of coalescent theory by one of its developers, which provides computer code for conducting basic simulations of neutral processes.
-
(1990)
Oxford Surveys in Evolutionary Biology
, pp. 1-44
-
-
Hudson, R.R.1
-
14
-
-
0036245438
-
Genealogical trees, coalescent theory and the analysis of genetic polymorphisms
-
Rosenberg, N. A. & Nordborg, M. Genealogical trees, coalescent theory and the analysis of genetic polymorphisms. Nature Rev. Genet. 3, 380-390 (2002).
-
(2002)
Nature Rev. Genet.
, vol.3
, pp. 380-390
-
-
Rosenberg, N.A.1
Nordborg, M.2
-
15
-
-
0021514720
-
Line-of-descent and genealogical processes, and their applications in population genetics models
-
Tavare, S. Line-of-descent and genealogical processes, and their applications in population genetics models. Theor. Popul. Biol. 26, 119-164 (1984).
-
(1984)
Theor. Popul. Biol.
, vol.26
, pp. 119-164
-
-
Tavare, S.1
-
16
-
-
0035576285
-
Prospects for nuclear gene phylogeography
-
Hare, M. P. Prospects for nuclear gene phylogeography. Trends Ecol. Evol. 16, 700-706 (2001).
-
(2001)
Trends Ecol. Evol.
, vol.16
, pp. 700-706
-
-
Hare, M.P.1
-
17
-
-
0027436508
-
Concordant mitochondrial and nuclear DNA phylogenies for populations of the teleost fish Fundulus heteroclitus
-
Bernardi, G., Sordino, P. & Powers, D.A. Concordant mitochondrial and nuclear DNA phylogenies for populations of the teleost fish Fundulus heteroclitus. Proc. Natl Acad. Sci. USA 90, 9271-9274 (1993).
-
(1993)
Proc. Natl Acad. Sci. USA
, vol.90
, pp. 9271-9274
-
-
Bernardi, G.1
Sordino, P.2
Powers, D.A.3
-
18
-
-
0028308584
-
Nuclear and mitochondrial gene genealogies and allozyme polymorphism across a major phylogeographic break in the copepod Tigriopus californicus
-
Burton, R. S. & Lee, B. N. Nuclear and mitochondrial gene genealogies and allozyme polymorphism across a major phylogeographic break in the copepod Tigriopus californicus. Proc. Natl Acad. Sci. USA 91, 5197-5201 (1994).
-
(1994)
Proc. Natl Acad. Sci. USA
, vol.91
, pp. 5197-5201
-
-
Burton, R.S.1
Lee, B.N.2
-
19
-
-
0028354921
-
Contrasting population structure from nuclear intron sequences and mtDNA of humpback whales
-
Palumbi, S. R. & Baker, C. S. Contrasting population structure from nuclear intron sequences and mtDNA of humpback whales. Mol. Biol. Evol. 11, 426-435 (1994).
-
(1994)
Mol. Biol. Evol.
, vol.11
, pp. 426-435
-
-
Palumbi, S.R.1
Baker, C.S.2
-
20
-
-
0031887328
-
Population structure in the American oyster as inferred by nuclear gene genealogies
-
Hare, M. P. & Avise, J. C. Population structure in the American oyster as inferred by nuclear gene genealogies. Mol. Phlogenet. Evol. 15, 119-128 (1998).
-
(1998)
Mol. Phlogenet. Evol.
, vol.15
, pp. 119-128
-
-
Hare, M.P.1
Avise, J.C.2
-
21
-
-
0035999488
-
Genetic evidence on the demography of speciation in allopatric dolphin species
-
Hare, M. P., Cipriano, F. & Palumbi, S. R. Genetic evidence on the demography of speciation in allopatric dolphin species. Evolution 58, 804-816 (2002).
-
(2002)
Evolution
, vol.58
, pp. 804-816
-
-
Hare, M.P.1
Cipriano, F.2
Palumbi, S.R.3
-
22
-
-
0037565090
-
The causes of phylogenetic conflict in a classic Drosophila species group
-
Machado, C. A. & Hey, J. The causes of phylogenetic conflict in a classic Drosophila species group. Proc. Royal Soc. Lond. B 270, 1193-1202 (2003).
-
(2003)
Proc. Royal Soc. Lond. B
, vol.270
, pp. 1193-1202
-
-
Machado, C.A.1
Hey, J.2
-
23
-
-
0023163377
-
Mitochondrial DNA human evolution
-
Cann, R. L., Stoneking, M. & Wilson, A. C. Mitochondrial DNA and human evolution. Nature 325, 31-36 (1987). A much-discussed paper that describes one of the first attempts to use mitochondrial DNA data to study the history of the human species.
-
(1987)
Nature
, vol.325
, pp. 31-36
-
-
Cann, R.L.1
Stoneking, M.2
Wilson, A.C.3
-
24
-
-
0026046333
-
African populations and the evolution of human mitochondrial DNA
-
Vigilant, L., Stoneking, M., Harpending, H., Hawkes, K. & Wilson, A. C. African populations and the evolution of human mitochondrial DNA. Science 253, 1503-1507 (1991).
-
(1991)
Science
, vol.253
, pp. 1503-1507
-
-
Vigilant, L.1
Stoneking, M.2
Harpending, H.3
Hawkes, K.4
Wilson, A.C.5
-
25
-
-
11944249445
-
Geographic origins of human mitochondrial DNA: Phylogenetic evidence from control region sequences
-
Maddison, D. R., Ruvolo, M. & Swofford, D. L. Geographic origins of human mitochondrial DNA: phylogenetic evidence from control region sequences. Syst. Biol. 41, 111-124 (1992).
-
(1992)
Syst. Biol.
, vol.41
, pp. 111-124
-
-
Maddison, D.R.1
Ruvolo, M.2
Swofford, D.L.3
-
26
-
-
0026521195
-
Human origins and analysis of mitochondrial DNA sequences
-
Templeton, A. R. Human origins and analysis of mitochondrial DNA sequences. Science 255, 737 (1992).
-
(1992)
Science
, vol.255
, pp. 737
-
-
Templeton, A.R.1
-
27
-
-
85044815939
-
The "Eve" hypothesis: A genetic critique and reanalysis
-
Templeton, A. R. The "Eve" hypothesis: a genetic critique and reanalysis. Am. Anthropol. 95, 51-72 (1993).
-
(1993)
Am. Anthropol.
, vol.95
, pp. 51-72
-
-
Templeton, A.R.1
-
28
-
-
0031053385
-
Mitochondrial and nuclear genes present conflicting portraits of human origins
-
Hey, J. Mitochondrial and nuclear genes present conflicting portraits of human origins. Mol. Biol. Evol. 14, 166-172 (1997).
-
(1997)
Mol. Biol. Evol.
, vol.14
, pp. 166-172
-
-
Hey, J.1
-
29
-
-
0029058158
-
Separating population structure from population history: A cladistic analysis of the geographical distribution of mitochondrial DNA haplotypes in the tiger salamander, Ambystoma tigrinum
-
Templeton, A. R., Routman, E. & Phillips, C. A. Separating population structure from population history: a cladistic analysis of the geographical distribution of mitochondrial DNA haplotypes in the tiger salamander, Ambystoma tigrinum. Genetics 140, 767-782 (1995). The original description of the nested-clade-analysis method.
-
(1995)
Genetics
, vol.140
, pp. 767-782
-
-
Templeton, A.R.1
Routman, E.2
Phillips, C.A.3
-
30
-
-
0032055149
-
Nested clade analyses of phylogeographic data: Testing hypotheses about gene flow and population history
-
Templeton, A. R. Nested clade analyses of phylogeographic data: testing hypotheses about gene flow and population history. Mol. Ecol. 7, 381-397 (1998).
-
(1998)
Mol. Ecol.
, vol.7
, pp. 381-397
-
-
Templeton, A.R.1
-
31
-
-
0037034778
-
Out of Africa again and again
-
Templeton, A. Out of Africa again and again. Nature 416, 45-51 (2002).
-
(2002)
Nature
, vol.416
, pp. 45-51
-
-
Templeton, A.1
-
32
-
-
0023818575
-
Genetic and fossil evidence for the origins of modern humans
-
Stringer, C. B. & Andrews, P. Genetic and fossil evidence for the origins of modern humans. Science 239, 1263-1268 (1988).
-
(1988)
Science
, vol.239
, pp. 1263-1268
-
-
Stringer, C.B.1
Andrews, P.2
-
33
-
-
0036900040
-
Statistical phylogeography
-
Knowles, L. L. & Maddison, W. P. Statistical phylogeography. Mol. Ecol. 11, 2623-2635 (2002).
-
(2002)
Mol. Ecol.
, vol.11
, pp. 2623-2635
-
-
Knowles, L.L.1
Maddison, W.P.2
-
34
-
-
0034496840
-
Gene divergence, population divergence, and the variance in coalescence time in phylogeographic studies
-
Edwards, S. V. & Beerli, P. Gene divergence, population divergence, and the variance in coalescence time in phylogeographic studies. Evolution 54, 1839-1854 (2000).
-
(2000)
Evolution
, vol.54
, pp. 1839-1854
-
-
Edwards, S.V.1
Beerli, P.2
-
35
-
-
0037286419
-
Stochasticity overrules the "three-times rule": Genetic drift, genetic draft, and coalescence times for nuclear loci versus mitochondrial DNA
-
Hudson, R. R. & Turelli, M. Stochasticity overrules the "three-times rule": genetic drift, genetic draft, and coalescence times for nuclear loci versus mitochondrial DNA. Evolution 57, 182-190 (2003).
-
(2003)
Evolution
, vol.57
, pp. 182-190
-
-
Hudson, R.R.1
Turelli, M.2
-
36
-
-
0036695118
-
Mathematical consequences of the genealogical species concept
-
Hudson, R. R. & Coyne, J. A. Mathematical consequences of the genealogical species concept. Evolution 56, 1557-1565 (2002).
-
(2002)
Evolution
, vol.56
, pp. 1557-1565
-
-
Hudson, R.R.1
Coyne, J.A.2
-
37
-
-
0016220238
-
The hitch-hiking effect of a favourable gene
-
Maynard Smith, J. & Haigh, J. The hitch-hiking effect of a favourable gene. Genome Res. 23, 23-35 (1974).
-
(1974)
Genome Res.
, vol.23
, pp. 23-35
-
-
Maynard Smith, J.1
Haigh, J.2
-
38
-
-
0024152983
-
Phylogenies from molecular sequences: Inference and reliability
-
Feisenstein, J. Phylogenies from molecular sequences: inference and reliability. Annu. Rev. Gen. 22, 521-565 (1988).
-
(1988)
Annu. Rev. Gen.
, vol.22
, pp. 521-565
-
-
Feisenstein, J.1
-
39
-
-
0001336205
-
-
eds. Hillis, D., Mortiz, C. & Mable, B., Sinauer Associates, Sunderland, Massachusetts
-
Swofford, D., Olsen, G., Waddel, P. & Hillis, D. in Molecular Systematics (eds. Hillis, D., Mortiz, C. & Mable, B.) 486-493 (Sinauer Associates, Sunderland, Massachusetts, 1996).
-
(1996)
Molecular Systematics
, pp. 486-493
-
-
Swofford, D.1
Olsen, G.2
Waddel, P.3
Hillis, D.4
-
40
-
-
0022211482
-
Statistical properties of the number of recombination events in the history of a sample of DNA sequences
-
Hudson, R. R. & Kaplan, N. L. Statistical properties of the number of recombination events in the history of a sample of DNA sequences. Genetics 111, 147-164 (1985).
-
(1985)
Genetics
, vol.111
, pp. 147-164
-
-
Hudson, R.R.1
Kaplan, N.L.2
-
41
-
-
0033940849
-
Recombinational and mutational hotspots within the human lipoprotein lipase gene
-
Templeton, A. R. et al. Recombinational and mutational hotspots within the human lipoprotein lipase gene. Am. J. Hum. Genet. 66, 69-83 (2000).
-
(2000)
Am. J. Hum. Genet.
, vol.66
, pp. 69-83
-
-
Templeton, A.R.1
-
42
-
-
0014494672
-
The number of heterozygous nucleotide sites maintained in a finite population due to steady flux of mutations
-
Kimura, M. The number of heterozygous nucleotide sites maintained in a finite population due to steady flux of mutations. Genetics 61, 893-903 (1969).
-
(1969)
Genetics
, vol.61
, pp. 893-903
-
-
Kimura, M.1
-
43
-
-
0015310384
-
The sampling theory of selectively neutral alleles
-
Ewens, W. J. The sampling theory of selectively neutral alleles. Theor. Popul. Biol. 3, 87-112 (1972).
-
(1972)
Theor. Popul. Biol.
, vol.3
, pp. 87-112
-
-
Ewens, W.J.1
-
44
-
-
0016491430
-
On the number of segregating sites in genetical models without recombination
-
Watterson, G. A. On the number of segregating sites in genetical models without recombination. Theor. Popul. Biol. 7, 256-275 (1975).
-
(1975)
Theor. Popul. Biol.
, vol.7
, pp. 256-275
-
-
Watterson, G.A.1
-
45
-
-
84890417804
-
The genetical structure of populations
-
Wright, S. The genetical structure of populations. Ann. Eugen. 15, 323-354 (1951).
-
(1951)
Ann. Eugen.
, vol.15
, pp. 323-354
-
-
Wright, S.1
-
46
-
-
0000862605
-
The interpretation of population structure by F-statistics with special regards to systems of mating
-
Wright, S. The interpretation of population structure by F-statistics with special regards to systems of mating. Evolution 19, 395-420 (1965).
-
(1965)
Evolution
, vol.19
, pp. 395-420
-
-
Wright, S.1
-
47
-
-
0025924545
-
Fst in a hierarchical island model
-
Slatkin, M. & Voelm, L. Fst in a hierarchical island model. Genetics 127, 627-629 (1991).
-
(1991)
Genetics
, vol.127
, pp. 627-629
-
-
Slatkin, M.1
Voelm, L.2
-
48
-
-
0026050476
-
Inbreeding coefficients and coalescence times
-
Slatkin, M. Inbreeding coefficients and coalescence times. Genome Res. 58, 167 (1991).
-
(1991)
Genome Res.
, vol.58
, pp. 167
-
-
Slatkin, M.1
-
49
-
-
0025654424
-
The coalescent and the genealogical process in geographically structured population
-
Notohara, M. The coalescent and the genealogical process in geographically structured population. J. Math. Biol. 29, 59-75 (1990).
-
(1990)
J. Math. Biol.
, vol.29
, pp. 59-75
-
-
Notohara, M.1
-
50
-
-
0032047371
-
Segregating sites in Wright's Island model
-
Wakeley, J. Segregating sites in Wright's Island model. Theor. Popul. Biol. 53, 166-174 (1998).
-
(1998)
Theor. Popul. Biol.
, vol.53
, pp. 166-174
-
-
Wakeley, J.1
-
51
-
-
0033823303
-
The effects of subdivision on the genetic divergence of populations and species
-
Wakeley, J. The effects of subdivision on the genetic divergence of populations and species. Evolution 54, 1092-1101 (2000).
-
(2000)
Evolution
, vol.54
, pp. 1092-1101
-
-
Wakeley, J.1
-
52
-
-
0035989441
-
The coalescent in a continuous, finite, linear population
-
Wilkins, J. F. & Wakeley, J, The coalescent in a continuous, finite, linear population. Genetics 161, 873-888 (2002).
-
(2002)
Genetics
, vol.161
, pp. 873-888
-
-
Wilkins, J.F.1
Wakeley, J.2
-
53
-
-
0033382484
-
Neutral additive genetic variance in a metapopulation
-
Whitlock, M. C. Neutral additive genetic variance in a metapopulation. Genet. Res. 74, 215-221 (1999).
-
(1999)
Genet. Res.
, vol.74
, pp. 215-221
-
-
Whitlock, M.C.1
-
54
-
-
0034758281
-
Gene genealogies in a metapopulation
-
Wakeley, J. & Aliacar, N. Gene genealogies in a metapopulation. Genetics 159, 893-905 (2001).
-
(2001)
Genetics
, vol.159
, pp. 893-905
-
-
Wakeley, J.1
Aliacar, N.2
-
55
-
-
0026113372
-
A multi-dimensional coalascent process applied to multi-allelic selection models and migration models
-
Hey, J. A multi-dimensional coalascent process applied to multi-allelic selection models and migration models. Theor. Popul. Biol. 39, 30-48 (1991).
-
(1991)
Theor. Popul. Biol.
, vol.39
, pp. 30-48
-
-
Hey, J.1
-
56
-
-
0021066244
-
Evolutionary relationships of DNA sequences in finite populations
-
Tajima, F. Evolutionary relationships of DNA sequences in finite populations, Genetics 105, 437-460 (1983).
-
(1983)
Genetics
, vol.105
, pp. 437-460
-
-
Tajima, F.1
-
57
-
-
0027945629
-
Estimating effective population size or mutation rate using the frequencies of mutatoins of various classes in a sample of DNA sequences
-
Fu, Y. X. Estimating effective population size or mutation rate using the frequencies of mutatoins of various classes in a sample of DNA sequences. Genetics 138, 1375-1386 (1994).
-
(1994)
Genetics
, vol.138
, pp. 1375-1386
-
-
Fu, Y.X.1
-
58
-
-
0024762773
-
The effect of change in population size on DNA polymorphism
-
Tajima, F. The effect of change in population size on DNA polymorphism. Genetics 123, 597-601 (1989).
-
(1989)
Genetics
, vol.123
, pp. 597-601
-
-
Tajima, F.1
-
59
-
-
0025951996
-
Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations
-
Slatkin, M. & Hudson, R. R. Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations. Genetics 129, 555-562 (1991).
-
(1991)
Genetics
, vol.129
, pp. 555-562
-
-
Slatkin, M.1
Hudson, R.R.2
-
60
-
-
0026548159
-
Population growth makes waves in the distribution of pairwise genetic differences
-
Rogers, A. R. & Harpending, H. Population growth makes waves in the distribution of pairwise genetic differences. Mol. Biol. Evol. 9, 552-568 (1992).
-
(1992)
Mol. Biol. Evol.
, vol.9
, pp. 552-568
-
-
Rogers, A.R.1
Harpending, H.2
-
61
-
-
0033869527
-
The coalescent in an exponentially growing metapopulation and its application to Arabidopsis thaliana
-
Innan, H. & Stephan, W. The coalescent in an exponentially growing metapopulation and its application to Arabidopsis thaliana. Genetics 155, 2015-2019 (2000).
-
(2000)
Genetics
, vol.155
, pp. 2015-2019
-
-
Innan, H.1
Stephan, W.2
-
62
-
-
0026709389
-
Estimation of levels of gene flow from DNA sequence data
-
Hudson, R. R., Slatkin, M. & Maddison, W. P. Estimation of levels of gene flow from DNA sequence data. Genetics 132, 583-589 (1992).
-
(1992)
Genetics
, vol.132
, pp. 583-589
-
-
Hudson, R.R.1
Slatkin, M.2
Maddison, W.P.3
-
63
-
-
0024423475
-
DNA polymorphism in a subdivided population: The expected number of segregating sites in the two-subpopulation model
-
Tajima, F. DNA polymorphism in a subdivided population: the expected number of segregating sites in the two-subpopulation model. Genetics 123, 229-240 (1989).
-
(1989)
Genetics
, vol.123
, pp. 229-240
-
-
Tajima, F.1
-
64
-
-
0025167690
-
Relationship between migration and DNA polymorphism in a local population
-
Tajima, F. Relationship between migration and DNA polymorphism in a local population. Genetics 126, 231-234 (1990).
-
(1990)
Genetics
, vol.126
, pp. 231-234
-
-
Tajima, F.1
-
65
-
-
0023395824
-
The average number of sites separating DNA sequences drawn from a subdivided population
-
Slatkin, M. The average number of sites separating DNA sequences drawn from a subdivided population. Theor. Popul. Biol. 32, 42-49 (1987).
-
(1987)
Theor. Popul. Biol.
, vol.32
, pp. 42-49
-
-
Slatkin, M.1
-
66
-
-
0001615347
-
Average number of nucleotide differences in a sample from a single subpopulation: A test for population subdivision
-
Strobeck, C. Average number of nucleotide differences in a sample from a single subpopulation: a test for population subdivision. Genetics 117, 149-153 (1987).
-
(1987)
Genetics
, vol.117
, pp. 149-153
-
-
Strobeck, C.1
-
67
-
-
21444445665
-
Pairwise differences under a general model of population subdivision
-
Wakeley, J. Pairwise differences under a general model of population subdivision. J. Genet. 75, 81-89 (1996).
-
(1996)
J. Genet.
, vol.75
, pp. 81-89
-
-
Wakeley, J.1
-
68
-
-
0036909632
-
Estimating divergence times from molecular data on phylogenetic and population genetic timescales
-
Arbogast, B. S., Edwards, S. V., Wakeley, J., Beerli, P. & Slowinski, J. B. Estimating divergence times from molecular data on phylogenetic and population genetic timescales. Annu. Rev. Ecol. Syst. 33, 707-740 (2002).
-
(2002)
Annu. Rev. Ecol. Syst.
, vol.33
, pp. 707-740
-
-
Arbogast, B.S.1
Edwards, S.V.2
Wakeley, J.3
Beerli, P.4
Slowinski, J.B.5
-
69
-
-
0035993631
-
Applications of selective neutrality tests to molecular ecology
-
Ford, M. J. Applications of selective neutrality tests to molecular ecology. Mol. Ecol. 11, 1245-1262 (2002).
-
(2002)
Mol. Ecol.
, vol.11
, pp. 1245-1262
-
-
Ford, M.J.1
-
70
-
-
0029036829
-
The hitchhiking effect on the site frequency spectrum of DNA polymorphisms
-
Braverman, J. M., Hudson, R. R. & Stephan, W. The hitchhiking effect on the site frequency spectrum of DNA polymorphisms. Genetics 140, 783-796 (1990).
-
(1990)
Genetics
, vol.140
, pp. 783-796
-
-
Braverman, J.M.1
Hudson, R.R.2
Stephan, W.3
-
71
-
-
0027453041
-
Statistical tests of neutrality of mutations
-
Fu, Y. X. & Li, W. H. Statistical tests of neutrality of mutations. Genetics 133, 693-709 (1993).
-
(1993)
Genetics
, vol.133
, pp. 693-709
-
-
Fu, Y.X.1
Li, W.H.2
-
72
-
-
0031014291
-
Inferring coalescence times from DNA sequence data
-
Tavare, S., Balding, D. J., Griffiths, R. C. & Donnelly, P. Inferring coalescence times from DNA sequence data. Genetics 145, 505-518 (1997).
-
(1997)
Genetics
, vol.145
, pp. 505-518
-
-
Tavare, S.1
Balding, D.J.2
Griffiths, R.C.3
Donnelly, P.4
-
73
-
-
0036964474
-
Approximate bayesian computation in population genetics
-
Beaumont, M. A., Zhang, W. & Balding, D. J. Approximate bayesian computation in population genetics. Genetics 162, 2025-2035 (2002).
-
(2002)
Genetics
, vol.162
, pp. 2025-2035
-
-
Beaumont, M.A.1
Zhang, W.2
Balding, D.J.3
-
74
-
-
0023339852
-
A test of neutral molecular evolution based on nucleotide data
-
Hudson, R. R., Kreitman, M. & Aguadé, M. A test of neutral molecular evolution based on nucleotide data. Genetics 116, 153-159 (1987).
-
(1987)
Genetics
, vol.116
, pp. 153-159
-
-
Hudson, R.R.1
Kreitman, M.2
Aguadé, M.3
-
75
-
-
0024341852
-
A cladistic measure of gene flow inferred from the phylogenies of alleles
-
Slatkin, M. & Maddison, W. P. A cladistic measure of gene flow inferred from the phylogenies of alleles, Genetics 123, 603-613 (1989). The first method that was developed to estimate migration rates using a gene tree.
-
(1989)
Genetics
, vol.123
, pp. 603-613
-
-
Slatkin, M.1
Maddison, W.P.2
-
76
-
-
0027099659
-
Estimating effective population size from samples of sequences: A bootstrap Monte Carlo integration method
-
Felsenstein, J. Estimating effective population size from samples of sequences: a bootstrap Monte Carlo integration method. Gene. Res. 60, 209-220 (1992). The first study to describe a method to estimate a population-genetic parameter (population size) by integrating over multiple gene trees.
-
(1992)
Gene. Res.
, vol.60
, pp. 209-220
-
-
Felsenstein, J.1
-
77
-
-
0027957337
-
A phylogenetic estimator of effective population size or mutation rate
-
Fu, Y. X. A phylogenetic estimator of effective population size or mutation rate, Genetics 136, 685-692 (1994).
-
(1994)
Genetics
, vol.136
, pp. 685-692
-
-
Fu, Y.X.1
-
78
-
-
0029654016
-
Inferring population history from molecular phylogenies
-
Nee, S., Holmes, E. C., Rambaut, A. & Harvey, P. H. Inferring population history from molecular phylogenies. Phil. Trans. Royal Soc. Lond. B 349, 25-31 (1995).
-
(1995)
Phil. Trans. Royal Soc. Lond. B
, vol.349
, pp. 25-31
-
-
Nee, S.1
Holmes, E.C.2
Rambaut, A.3
Harvey, P.H.4
-
79
-
-
0033911330
-
An integrated framework for the inference of viral population history from reconstructed genealogies
-
Pybus, O. G., Rambaut, A. & Harvey, P. H. An integrated framework for the inference of viral population history from reconstructed genealogies. Genetics 155, 1429-1437 (2000).
-
(2000)
Genetics
, vol.155
, pp. 1429-1437
-
-
Pybus, O.G.1
Rambaut, A.2
Harvey, P.H.3
-
80
-
-
0038242063
-
-
(ed. Seillier-Moiseiwitsch, F.) (Institute of Mathematical Statistics and American Mathematical Soc., Hayward, California)
-
Felsenstein, J., Kuhner, M. K., Yamato, J. & Beerli, P. in Statistics in Genetics and Molecular Biology (ed. Seillier-Moiseiwitsch, F.) (Institute of Mathematical Statistics and American Mathematical Soc., Hayward, California, 1999).
-
(1999)
Statistics in Genetics and Molecular Biology
-
-
Felsenstein, J.1
Kuhner, M.K.2
Yamato, J.3
Beerli, P.4
-
81
-
-
34548452457
-
Simulating probability distributions in the coalescent
-
Griffiths, R. C. & Tavare, S. Simulating probability distributions in the coalescent. Theor. Popul. Biol. 46, 131-159 (1994).
-
(1994)
Theor. Popul. Biol.
, vol.46
, pp. 131-159
-
-
Griffiths, R.C.1
Tavare, S.2
-
82
-
-
0001301442
-
The age of a mutation in a general coalescent tree
-
Griffiths, R. C. & Tavare, S. The age of a mutation in a general coalescent tree. Stochastic Models 14, 273-295 (1998).
-
(1998)
Stochastic Models
, vol.14
, pp. 273-295
-
-
Griffiths, R.C.1
Tavare, S.2
-
83
-
-
0029027992
-
Estimating effective population size and mutation rate from sequence data using Metropolis-Hastings sampling
-
Kuhner, M. K., Yamato, J. & Felsenstein, J. Estimating effective population size and mutation rate from sequence data using Metropolis-Hastings sampling. Genetics 140, 1421-1430 (1995).
-
(1995)
Genetics
, vol.140
, pp. 1421-1430
-
-
Kuhner, M.K.1
Yamato, J.2
Felsenstein, J.3
-
84
-
-
0033994020
-
Inference from gene trees in a subdivided population
-
Bahlo, M. & Griffiths, R. C. Inference from gene trees in a subdivided population. Theor. Popul. Biol. 57, 79-95 (2000).
-
(2000)
Theor. Popul. Biol.
, vol.57
, pp. 79-95
-
-
Bahlo, M.1
Griffiths, R.C.2
-
85
-
-
0031835126
-
Maximum likelihood estimation of population growth rates based on the coalescent
-
Kuhner, M. K., Yamato, J. & Felsenstein, J. Maximum likelihood estimation of population growth rates based on the coalescent. Genetics. 149, 429-434 (1998).
-
(1998)
Genetics
, vol.149
, pp. 429-434
-
-
Kuhner, M.K.1
Yamato, J.2
Felsenstein, J.3
-
86
-
-
0033756316
-
Maximum likelihood estimation of recombination rates from population data
-
Kuhner, M. K., Yamato, J. & Felsenstein, J. Maximum likelihood estimation of recombination rates from population data. Genetics 156, 1393-1401 (2000).
-
(2000)
Genetics
, vol.156
, pp. 1393-1401
-
-
Kuhner, M.K.1
Yamato, J.2
Felsenstein, J.3
-
87
-
-
0033965571
-
Estimation of population parameters and recombination rates from single nucleotide polymorphisms
-
Nielsen, R. Estimation of population parameters and recombination rates from single nucleotide polymorphisms. Genetics 154, 931-942 (2000).
-
(2000)
Genetics
, vol.154
, pp. 931-942
-
-
Nielsen, R.1
-
88
-
-
0032979748
-
Maximum-likelihood estimation of migration rates and effective population numbers in two populations using a coalescent approach
-
Beerli, P. & Felsenstein, J. Maximum-likelihood estimation of migration rates and effective population numbers in two populations using a coalescent approach. Genetics 152, 763-773 (1999).
-
(1999)
Genetics
, vol.152
, pp. 763-773
-
-
Beerli, P.1
Felsenstein, J.2
-
89
-
-
0025618391
-
Genealogy of neutral genes in two partially isolated populations
-
Takahata, N. & Slatkin, M, Genealogy of neutral genes in two partially isolated populations. Theor. Popul. 38, 331-350 (1990). The first paper to address the difficulty of distinguishing the presence of gene flow in a non-equilibrium isolation model.
-
(1990)
Theor. Popul.
, vol.38
, pp. 331-350
-
-
Takahata, N.1
Slatkin, M.2
-
90
-
-
0002234755
-
-
eds. Schierwater, B., Streit, B., Wagner, G. & DeSalle, R., Birkhäuser, Basel
-
Hey, J. in Molecular Approaches to Ecology and Evolution (eds. Schierwater, B., Streit, B., Wagner, G. & DeSalle, R.) 435-449 (Birkhäuser, Basel, 1994).
-
(1994)
Molecular Approaches to Ecology and Evolution
, pp. 435-449
-
-
Hey, J.1
-
91
-
-
0001915726
-
-
eds. DeSalle, R. & Schierwater, B., Birkhäuser, Basel
-
Wakeley, J. & Hey, J. in Molecular Approaches to Ecology and Evolution (eds. DeSalle, R. & Schierwater, B.) 157-175 (Birkhäuser, Basel, 1998).
-
(1998)
Molecular Approaches to Ecology and Evolution
, pp. 157-175
-
-
Wakeley, J.1
Hey, J.2
-
92
-
-
0034967295
-
Distinguishing migration from isolation: A Markov chain Monte Carlo approach
-
Nielsen, R. & Wakeley, J. Distinguishing migration from isolation: a Markov chain Monte Carlo approach. Genetics 156, 885-896 (2001).
-
(2001)
Genetics
, vol.156
, pp. 885-896
-
-
Nielsen, R.1
Wakeley, J.2
-
93
-
-
84949558457
-
Random processes in genetics
-
Moran, P. A. P. Random processes in genetics. Camb. Philos. Soc. Proc. 54, 60-71 (1958).
-
(1958)
Camb. Philos. Soc. Proc.
, vol.54
, pp. 60-71
-
-
Moran, P.A.P.1
-
94
-
-
0026662698
-
A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimating
-
Templeton, A. R., Crandall, K. A. & Sing, C. F. A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimating. Genetics 132, 619-633 (1992).
-
(1992)
Genetics
, vol.132
, pp. 619-633
-
-
Templeton, A.R.1
Crandall, K.A.2
Sing, C.F.3
-
95
-
-
0023425198
-
Cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping. I. Basic theory and an analysis of alcohol dehydrogenase activity in Drosophila
-
Templeton, A. R., Boerwinkle, E. & Sing, C. F. Cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping. I. Basic theory and an analysis of alcohol dehydrogenase activity in Drosophila. Genetics 117, 343-351 (1987).
-
(1987)
Genetics
, vol.117
, pp. 343-351
-
-
Templeton, A.R.1
Boerwinkle, E.2
Sing, C.F.3
-
96
-
-
0027278852
-
A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping IV. Nested analyses with cladogram uncertainty and recombination
-
Templeton, A. R. & Sing, C. F. A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping IV. Nested analyses with cladogram uncertainty and recombination. Genetics 134, 659-669 (1993).
-
(1993)
Genetics
, vol.134
, pp. 659-669
-
-
Templeton, A.R.1
Sing, C.F.2
-
97
-
-
0034100234
-
GeoDis: A program for the cladistic nested analysis of the geographical distribution of genetic haplotypes
-
Posada, D., Crandall, K. A. & Templeton, A. R. GeoDis: a program for the cladistic nested analysis of the geographical distribution of genetic haplotypes. Mol. Ecol. 9, 487-488 (2000).
-
(2000)
Mol. Ecol.
, vol.9
, pp. 487-488
-
-
Posada, D.1
Crandall, K.A.2
Templeton, A.R.3
-
98
-
-
0000439372
-
Breeding structure of populations in relation to speciation
-
Wright, S. Breeding structure of populations in relation to speciation. Am. Nat. 74, 232-248 (1940).
-
(1940)
Am. Nat.
, vol.74
, pp. 232-248
-
-
Wright, S.1
-
99
-
-
0001358930
-
The stepping stone model of population structure and the decrease of genetic correlation with distance
-
Kimura, M. & Weiss, G. H. The stepping stone model of population structure and the decrease of genetic correlation with distance. Genetics 49, 561-576 (1964).
-
(1964)
Genetics
, vol.49
, pp. 561-576
-
-
Kimura, M.1
Weiss, G.H.2
-
100
-
-
0001024012
-
Isolation by distance
-
Wright, S. Isolation by distance. Genetics 28, 114-138 (1943).
-
(1943)
Genetics
, vol.28
, pp. 114-138
-
-
Wright, S.1
-
102
-
-
0017731844
-
Gene flow and genetic drift in a species subject to frequent local extinction
-
Slatkin, M. Gene flow and genetic drift in a species subject to frequent local extinction. Theor. Popul. Biol. 12, 253-262 (1977).
-
(1977)
Theor. Popul. Biol.
, vol.12
, pp. 253-262
-
-
Slatkin, M.1
-
103
-
-
0024256618
-
Extinction and recolonization: Their effects on the genetic differentiation of local populations
-
Wade, M. J. & McCauley, D. E. Extinction and recolonization: their effects on the genetic differentiation of local populations. Evolution 42, 995-1005 (1988).
-
(1988)
Evolution
, vol.42
, pp. 995-1005
-
-
Wade, M.J.1
McCauley, D.E.2
|