메뉴 건너뛰기




Volumn 24, Issue 9, 2007, Pages 2049-2058

Dissecting linkage disequilibrium in African-American genomes: Roles of markers and individuals

Author keywords

Admixture population; African American; Ancestry informative markers; Linkage disequilibrium; Single nucleotide polymorphism

Indexed keywords

ADULT; AFRICAN AMERICAN; ARTICLE; CHROMOSOME 21; FEMALE; GENE LINKAGE DISEQUILIBRIUM; GENE MAPPING; GENETIC ANALYSIS; GENETIC LINKAGE; GENETIC MARKER; GENOME ANALYSIS; GENOTYPE; HERITABILITY; HUMAN; MALE; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 34548462927     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msm135     Document Type: Article
Times cited : (16)

References (43)
  • 1
    • 0036208832 scopus 로고    scopus 로고
    • Patterns of linkage disequilibrium in the human genome
    • Ardlie KG, Kruglyak L, Seielstad M. 2002. Patterns of linkage disequilibrium in the human genome. Nat Rev Genet. 3:299-309.
    • (2002) Nat Rev Genet , vol.3 , pp. 299-309
    • Ardlie, K.G.1    Kruglyak, L.2    Seielstad, M.3
  • 2
    • 0022994259 scopus 로고
    • Human genetics: The molecular challenge
    • Bodmer WF. 1986. Human genetics: the molecular challenge. Cold Spring Harb Symp Quant Biol. 51(Pt 1):1-13.
    • (1986) Cold Spring Harb Symp Quant Biol , vol.51 , Issue.PART 1 , pp. 1-13
    • Bodmer, W.F.1
  • 3
    • 0024209791 scopus 로고
    • Admixture as a tool for finding linked genes and detecting that difference from allelic association between loci
    • Chakraborty R, Weiss KM. 1988. Admixture as a tool for finding linked genes and detecting that difference from allelic association between loci. Proc Natl Acad Sci USA. 85:9119-9123.
    • (1988) Proc Natl Acad Sci USA , vol.85 , pp. 9119-9123
    • Chakraborty, R.1    Weiss, K.M.2
  • 4
    • 0041564051 scopus 로고    scopus 로고
    • Markers informative for ancestry demonstrate consistent megabase-length linkage disequilibrium in the African American population
    • Collins-Schramm HE, Chima B, Operario DJ, Criswell LA, Seldin MF. 2003. Markers informative for ancestry demonstrate consistent megabase-length linkage disequilibrium in the African American population. Hum Genet. 113:211-219.
    • (2003) Hum Genet , vol.113 , pp. 211-219
    • Collins-Schramm, H.E.1    Chima, B.2    Operario, D.J.3    Criswell, L.A.4    Seldin, M.F.5
  • 5
    • 17144371712 scopus 로고    scopus 로고
    • De La Vega FM, Isaac H, Collins A, et al. (29 co-authors). 2005. The linkage disequilibrium maps of three human chromosomes across four populations reflect their demographic history and a common underlying recombination pattern. Genome Res. 15:454-462.
    • De La Vega FM, Isaac H, Collins A, et al. (29 co-authors). 2005. The linkage disequilibrium maps of three human chromosomes across four populations reflect their demographic history and a common underlying recombination pattern. Genome Res. 15:454-462.
  • 6
    • 0041817568 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data: Linked loci and correlated allele frequencies
    • Falush D, Stephens M, Pritchard JK. 2003. Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics. 164:1567-1587.
    • (2003) Genetics , vol.164 , pp. 1567-1587
    • Falush, D.1    Stephens, M.2    Pritchard, J.K.3
  • 7
    • 18444369013 scopus 로고    scopus 로고
    • Gabriel SB, Schaffner SF, Nguyen H, et al. (18 co-authors). 2002. The structure of haplotype blocks in the human genome. Science. 296:2225-2229.
    • Gabriel SB, Schaffner SF, Nguyen H, et al. (18 co-authors). 2002. The structure of haplotype blocks in the human genome. Science. 296:2225-2229.
  • 8
    • 0028298036 scopus 로고
    • Maximum-likelihood estimation of gene location by linkage disequilibrium
    • Hill WG, Weir BS. 1994. Maximum-likelihood estimation of gene location by linkage disequilibrium. Am J Hum Genet. 54:705-714.
    • (1994) Am J Hum Genet , vol.54 , pp. 705-714
    • Hill, W.G.1    Weir, B.S.2
  • 10
    • 31944450654 scopus 로고    scopus 로고
    • Huang W, He Y, Wang H, et al. (21 co-authors). 2006. Linkage disequilibrium sharing and haplotype-tagged SNP portability between populations. Proc Natl Acad Sci USA. 103: 1418-1421.
    • Huang W, He Y, Wang H, et al. (21 co-authors). 2006. Linkage disequilibrium sharing and haplotype-tagged SNP portability between populations. Proc Natl Acad Sci USA. 103: 1418-1421.
  • 11
    • 0344500841 scopus 로고    scopus 로고
    • A scan for linkage disequilibrium across the human genome
    • Huttley GA, Smith MW, Carrington M, O'Brien SJ. 1999. A scan for linkage disequilibrium across the human genome. Genetics. 152:1711-1722.
    • (1999) Genetics , vol.152 , pp. 1711-1722
    • Huttley, G.A.1    Smith, M.W.2    Carrington, M.3    O'Brien, S.J.4
  • 12
    • 0034789532 scopus 로고    scopus 로고
    • Johnson GC, Esposito L, Barratt BJ, et al. (21 co-authors). 2001. Haplotype tagging for the identification of common disease genes. Nat Genet. 29:233-237.
    • Johnson GC, Esposito L, Barratt BJ, et al. (21 co-authors). 2001. Haplotype tagging for the identification of common disease genes. Nat Genet. 29:233-237.
  • 13
    • 0028894185 scopus 로고
    • Linkage disequilibrium as a gene-mapping tool
    • Jorde LB. 1995. Linkage disequilibrium as a gene-mapping tool. Am J Hum Genet. 56:11-14.
    • (1995) Am J Hum Genet , vol.56 , pp. 11-14
    • Jorde, L.B.1
  • 14
    • 12144290432 scopus 로고    scopus 로고
    • Ke X, Hunt S, Tapper W, et al. (12 co-authors). 2004. The impact of SNP density on fine-scale patterns of linkage disequilibrium. Hum Mol Genet. 13:577-588.
    • Ke X, Hunt S, Tapper W, et al. (12 co-authors). 2004. The impact of SNP density on fine-scale patterns of linkage disequilibrium. Hum Mol Genet. 13:577-588.
  • 16
    • 0033039497 scopus 로고    scopus 로고
    • Prospects for whole-genome linkage disequilibrium mapping of common disease genes
    • Kruglyak L. 1999. Prospects for whole-genome linkage disequilibrium mapping of common disease genes. Nat Genet. 22:139-144.
    • (1999) Nat Genet , vol.22 , pp. 139-144
    • Kruglyak, L.1
  • 17
    • 0030667521 scopus 로고    scopus 로고
    • Demographic history and linkage disequilibrium in human populations
    • Laan M, Paabo S. 1997. Demographic history and linkage disequilibrium in human populations. Nat Genet. 17:435-438.
    • (1997) Nat Genet , vol.17 , pp. 435-438
    • Laan, M.1    Paabo, S.2
  • 18
    • 0033912677 scopus 로고    scopus 로고
    • Significant admixture linkage disequilibrium across 30 cM around the FY locus in African Americans
    • Lautenberger JA, Stephens JC, O'Brien SJ, Smith MW. 2000. Significant admixture linkage disequilibrium across 30 cM around the FY locus in African Americans. Am J Hum Genet. 66:969-978.
    • (2000) Am J Hum Genet , vol.66 , pp. 969-978
    • Lautenberger, J.A.1    Stephens, J.C.2    O'Brien, S.J.3    Smith, M.W.4
  • 19
    • 0000356980 scopus 로고
    • The interaction of selection and linkage. II. Optimum models
    • Lewontin RC. 1964. The interaction of selection and linkage. II. Optimum models. Genetics. 50:757-782.
    • (1964) Genetics , vol.50 , pp. 757-782
    • Lewontin, R.C.1
  • 20
    • 0032231748 scopus 로고    scopus 로고
    • Mapping genes that underlie ethnic differences in disease risk: Methods for detecting linkage in admixed populations, by conditioning on parental admixture
    • McKeigue PM. 1998. Mapping genes that underlie ethnic differences in disease risk: methods for detecting linkage in admixed populations, by conditioning on parental admixture. Am J Hum Genet. 63:241-251.
    • (1998) Am J Hum Genet , vol.63 , pp. 241-251
    • McKeigue, P.M.1
  • 21
    • 0033661647 scopus 로고    scopus 로고
    • Efficiency of estimation of haplotype frequencies: Use of marker phenotypes of unrelated individuals versus counting of phase-known gametes
    • McKeigue PM. 2000. Efficiency of estimation of haplotype frequencies: use of marker phenotypes of unrelated individuals versus counting of phase-known gametes. Am J Hum Genet. 67:1626-1627.
    • (2000) Am J Hum Genet , vol.67 , pp. 1626-1627
    • McKeigue, P.M.1
  • 22
    • 11144296825 scopus 로고    scopus 로고
    • Prospects for admixture mapping of complex traits
    • McKeigue PM. 2005. Prospects for admixture mapping of complex traits. Am J Hum Genet. 76:1-7.
    • (2005) Am J Hum Genet , vol.76 , pp. 1-7
    • McKeigue, P.M.1
  • 23
    • 0033930943 scopus 로고    scopus 로고
    • Estimation of admixture and detection of linkage in admixed populations by a Bayesian approach: Application to African-American populations
    • McKeigue PM, Carpenter JR, Parra EJ, Shriver MD. 2000. Estimation of admixture and detection of linkage in admixed populations by a Bayesian approach: application to African-American populations. Ann Hum Genet. 64:171-186.
    • (2000) Ann Hum Genet , vol.64 , pp. 171-186
    • McKeigue, P.M.1    Carpenter, J.R.2    Parra, E.J.3    Shriver, M.D.4
  • 24
    • 0032472024 scopus 로고
    • (11 co-authors). 1998. Estimating African American admixture proportions by use of population-specific alleles
    • Parra EJ, Marcini A, Akey J, et al. (11 co-authors). 1998. Estimating African American admixture proportions by use of population-specific alleles. Am J Hum Genet. 63: 1839-1851.
    • (1839) Am J Hum Genet , vol.63
    • Parra, E.J.1    Marcini, A.2    Akey, J.3
  • 25
    • 2342622086 scopus 로고    scopus 로고
    • Patterson N, Hattangadi N, Lane B, et al. (12 co-authors). 2004. Methods for high-density admixture mapping of disease genes. Am J Hum Genet. 74:979-1000.
    • Patterson N, Hattangadi N, Lane B, et al. (12 co-authors). 2004. Methods for high-density admixture mapping of disease genes. Am J Hum Genet. 74:979-1000.
  • 27
    • 0034977045 scopus 로고    scopus 로고
    • Linkage disequilibrium in humans: Models and data
    • Pritchard JK, Przeworski M. 2001. Linkage disequilibrium in humans: models and data. Am J Hum Genet. 69:1-14.
    • (2001) Am J Hum Genet , vol.69 , pp. 1-14
    • Pritchard, J.K.1    Przeworski, M.2
  • 28
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data
    • Pritchard JK, Stephens M, Donnelly P. 2000. Inference of population structure using multilocus genotype data. Genetics. 155:945-959.
    • (2000) Genetics , vol.155 , pp. 945-959
    • Pritchard, J.K.1    Stephens, M.2    Donnelly, P.3
  • 29
    • 0035837267 scopus 로고    scopus 로고
    • Reich DE, Cargill M, Bolk S, et al. (11 co-authors). 2001. Linkage disequilibrium in the human genome. Nature. 411:199-204.
    • Reich DE, Cargill M, Bolk S, et al. (11 co-authors). 2001. Linkage disequilibrium in the human genome. Nature. 411:199-204.
  • 31
    • 21344471888 scopus 로고    scopus 로고
    • Salari K, Choudhry S, Tang H, et al. (23 co-authors). 2005. Genetic admixture and asthma-related phenotypes in Mexican American and Puerto Rican asthmatics. Genet Epidemiol. 29:76-86.
    • Salari K, Choudhry S, Tang H, et al. (23 co-authors). 2005. Genetic admixture and asthma-related phenotypes in Mexican American and Puerto Rican asthmatics. Genet Epidemiol. 29:76-86.
  • 32
    • 34548433218 scopus 로고    scopus 로고
    • Schneider S, Roessli D, Excoffier L. 2000. Arlequin: a software for population genetics data analysis. Version 2.000. Geneva Switzerland, Genetics and Biometry Lab, Department of Anthropology: University of Geneva
    • Schneider S, Roessli D, Excoffier L. 2000. Arlequin: a software for population genetics data analysis. Version 2.000. Geneva (Switzerland): Genetics and Biometry Lab, Department of Anthropology: University of Geneva.
  • 33
    • 3042616060 scopus 로고    scopus 로고
    • Putative ancestral origins of chromosomal segments in individual African Americans: Implications for admixture mapping
    • Seldin MF, Morii T, Collins-Schramm HE, Chima B, Kittles R, Criswell LA, Li H. 2004. Putative ancestral origins of chromosomal segments in individual African Americans: implications for admixture mapping. Genome Res. 14:1076-1084.
    • (2004) Genome Res , vol.14 , pp. 1076-1084
    • Seldin, M.F.1    Morii, T.2    Collins-Schramm, H.E.3    Chima, B.4    Kittles, R.5    Criswell, L.A.6    Li, H.7
  • 35
    • 22944467804 scopus 로고    scopus 로고
    • Mapping by admixture linkage disequilibrium: Advances, limitations and guidelines
    • Smith MW, O'Brien SJ. 2005. Mapping by admixture linkage disequilibrium: advances, limitations and guidelines. Nat Rev Genet. 6:623-632.
    • (2005) Nat Rev Genet , vol.6 , pp. 623-632
    • Smith, M.W.1    O'Brien, S.J.2
  • 36
    • 0028001245 scopus 로고
    • Mapping by admixture linkage disequilibrium in human populations: Limits and guidelines
    • Stephens JC, Briscoe D, O'Brien SJ. 1994. Mapping by admixture linkage disequilibrium in human populations: limits and guidelines. Am J Hum Genet. 55:809-824.
    • (1994) Am J Hum Genet , vol.55 , pp. 809-824
    • Stephens, J.C.1    Briscoe, D.2    O'Brien, S.J.3
  • 37
    • 0242691208 scopus 로고    scopus 로고
    • A comparison of Bayesian methods for haplotype reconstruction from population genotype data
    • Stephens M, Donnelly P. 2003. A comparison of Bayesian methods for haplotype reconstruction from population genotype data. Am J Hum Genet. 73:1162-1169.
    • (2003) Am J Hum Genet , vol.73 , pp. 1162-1169
    • Stephens, M.1    Donnelly, P.2
  • 38
    • 0035071957 scopus 로고    scopus 로고
    • A new statistical method for haplotype reconstruction from population data
    • Stephens M, Smith NJ, Donnelly P. 2001. A new statistical method for haplotype reconstruction from population data. Am J Hum Genet. 68:978-989.
    • (2001) Am J Hum Genet , vol.68 , pp. 978-989
    • Stephens, M.1    Smith, N.J.2    Donnelly, P.3
  • 39
    • 20444378173 scopus 로고    scopus 로고
    • Linkage disequilibrium grouping of single nucleotide polymorphisms (SNPs) reflecting haplotype phylogeny for efficient selection of tag SNPs
    • Takeuchi F, Yanai K, Morii T, Ishinaga Y, Taniguchi-Yanai K, Nagano S, Kato N. 2005. Linkage disequilibrium grouping of single nucleotide polymorphisms (SNPs) reflecting haplotype phylogeny for efficient selection of tag SNPs. Genetics. 170:291-304.
    • (2005) Genetics , vol.170 , pp. 291-304
    • Takeuchi, F.1    Yanai, K.2    Morii, T.3    Ishinaga, Y.4    Taniguchi-Yanai, K.5    Nagano, S.6    Kato, N.7
  • 40
    • 79959503826 scopus 로고    scopus 로고
    • The International HapMap Project
    • The International HapMap Consortium
    • The International HapMap Consortium. 2003. The International HapMap Project. Nature. 426:789-796.
    • (2003) Nature , vol.426 , pp. 789-796
  • 41
    • 84982339813 scopus 로고
    • Zusammensetzung von Populationen und Korrelationserscheinungen von Standpunkt der Vererbungslehre aus betrachtet
    • Wahlund S. 1928. Zusammensetzung von Populationen und Korrelationserscheinungen von Standpunkt der Vererbungslehre aus betrachtet. Hereditas. 11:65-106.
    • (1928) Hereditas , vol.11 , pp. 65-106
    • Wahlund, S.1
  • 42
    • 0036137130 scopus 로고    scopus 로고
    • Linkage disequilibrium and the mapping of complex human traits
    • Weiss KM, Clark AG. 2002. Linkage disequilibrium and the mapping of complex human traits. Trends Genet. 18:19-24.
    • (2002) Trends Genet , vol.18 , pp. 19-24
    • Weiss, K.M.1    Clark, A.G.2
  • 43
    • 13944250687 scopus 로고    scopus 로고
    • Zhu X, Luke A, Cooper RS, et al. (11 co-authors). 2005. Admixture mapping for hypertension loci with genome-scan markers. Nat Genet. 37:177-181.
    • Zhu X, Luke A, Cooper RS, et al. (11 co-authors). 2005. Admixture mapping for hypertension loci with genome-scan markers. Nat Genet. 37:177-181.


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.