Whole genome association mapping identifies naked grain locus NUD as determinant of β-glucan content in barley;Genomo asociacijų genolapio sudarymas, identifikuojant nud lokusą - β gliukanų kiekio miežiuose determinantą

Zemdirbyste

Volumn 98, Issue 3, 2011, Pages 283-292

  Mežaka, Ieva ^a   Bleidere, Mara ^a   Legzdiņa, Linda ^a   Rostoks, Nils ^b  

^a INSTITUTE OF AGRICULTURAL RESOURCES AND ECONOMICS   (Latvia)

^b UNIVERSITY OF LATVIA   (Latvia)

Author keywords

Association mapping; Barley; Hulless barley; NUD gene; glucan content

Indexed keywords

HORDEUM;

EID: 80053486253     PISSN: 13923196     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (30)

1. Ames N. P., Rhymer C. R. Issues surrounding health claims for barley // Journal of Nutrition. - 2008, vol. 138, iss. 6, p. - 1237S-1243S
2. Balding J. D. A tutorial on statistical methods for population association studies // Genetics. - 2006, vol. 7, p. 781-791
3. Barrett J. C., Fry B., Maller J. et al. Haploview: analysis and visualization of LD and haplotype maps // Bioinformatics. - 2005, vol. 21, p. 263-265
4. Bradbury P. J., Zhang Z., Kroon D. E. et al. TASSEL: software for association mapping of complex traits in diverse samples // Bioinformatics. - 2007, vol. 23, iss. 19, p. - 2633-2635
5. Caldwell K. S., Russell J., Langridge P. et al. Extreme population-dependent linkage disequilibrium detected in an inbreeding plant species, Hordeum vulgare // Genetics. - 2006, vol. 172, iss. 1, p. 557-567
6. Close T. J., Bhat P. R., Lonardi S. et al. Development and implementation of high-throughput SNP genotyping in barley // BMC Genomics. - 2009, vol. 10:582. [accessed 08 08 2011]
7. Ehrenbergerová J., Březinová Belcredi N., Psota V. et al. Changes caused by genotype and environmental conditions in ß-glucan content of spring barley for dietically beneficial human nutrition // Plant Foods for Human Nutrition. - 2008, vol. 63, p. 111-117
8. Ehrenbergerová J., Vaculová K., Psota V. et al. Effects of cropping system and genotype on variability in important phytonutrients content of the barley grain for direct food use // Plant, Soil and Environment. - 2003, vol. 49, iss. 10, p. 443-450
9. Ehrenreich I. M., Hanzawa Y., Chou L. et al. Candidate gene association mapping of Arabidopsis flowering time // Genetics. - 2009, vol. 183, p. 325-335
10. Evanno G., Regnaut S., Goudet J. Detecting the number of clusters of individuals using the software STRUC- TURE: a simulation study // Molecular Biology. - 2005, vol. 14, p. - 2611-2620
11. Fastnaught C. E., Berglund P. T., Holm E. T. Genetic and environmental variation in ß-glucan content and quality parameters of barley for food // Crop Science. - 1996, vol. 36, p. 941-946
12. Gordon I. L., Byth D. E., Balaam L. N. Variance of heritability ratios estimated from phenotypic variancecomponents // Biometrics. - 1972, vol. 28, p. 401-415
13. Han F., Ullrich S. E., Chirat S. et al. Mapping of ß-glucan content and ß-glucanase activity loci in barley grain and malt // Theoretical andApplied Genetics. - 1995, vol. 91, p. 921-927
14. Hardy O. J., Vekemans X. SPAGeDi: a versatile computer program to analyse spatial genetic structure at the individual or population levels // Molecular Ecology Notes. - 2002, vol. 2, p. 618-620
15. th International Barley Genetics Symposium. - Brno, Czechia, 2004, p. 543-548
16. Kruglyak L. The use of a genetic map of biallelic markers in linkage studies // Nature Genetics. - 1997, vol. 17, p. 21-24
17. Li J., Båga M., Rossnagel B. G. et al. Identification of quantitative trait loci for β-glucan concentration in barley grain // Journal of Cereal Science. - 2008, vol. 48, p. 678-655
18. McNab J. M., Smithard R. R. Barley β-glucan: an antinutritional factor in poultry feeding // Nutrition Research Reviews. - 1992, vol. 5, p. 45-60
19. Molina-Cano J. L., Molina-Cano M., Moralejo M. QTL analysis of a cross between European and North American malting barleys reveals a putative candidate gene for β-glucan content on chromosome 1H // Molecular Breeding. - 2007, vol. 19, No. 3, p. 275-284
20. Nordborg M., Borevitz J. O., Bergelson J. et al. The extent of linkage disequilibrium in Arabidopsis thaliana // Nature Genetics. - 2002, vol. 30, p. 190-193
21. Pritchard J. K., Stephens M., Donnely P. Inference of population structure using multilocus genotype data // Genetics. - 2000, vol. 155, p. 945-959
22. Remington D. L., Thornsberry J. M., Matsuoka Y., Wilson L. Structure of linkage disequilibrium and phenotypic associations in the maize genome // Proceedings of the National Academy of Sciences of the United States of America. - 2001, vol. 98, p. - 11479-11484
23. Rostoks N., Mudie S., Cardle L. et al. Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress // Molecular Genetics and Genomics. - 2005, vol. 274, No. 5, p. 515-527
24. Rostoks N., Ramsay L., MacKenzie K. et al. Arecent history of artificial outcrossing facilitates whole genome association mapping in elite inbred crop varieties // Proceedings of the National Academy of Sciences of the United States of America. - 2006, vol. 103, p. - 18656-18661
25. Swanston J. S. Effects on barley grain size, texture and modification during malting associated with three genes on chromosome 1 // Journal of Cereal Sciences. - 1995, vol. 22, p. 157-161
26. Taketa S., Amano S., Tsujino Y. et al. Barley grain with adhering hulls is controlled by an EFR family transcription factor gene regulating a lipid biosynthesis pathway // Proceedings of the National Academy of Sciences of the United States of America. - 2008, vol. 105, iss. 10, p. - 4062-4067
27. Taketa S., Kikuchi S., Awayama T. et al. Monophyletic origin of naked barley inferred from molecular analysis of a marker closely linked to the naked caryopsis gene (nud) // Theoretical and Applied Genetics. - 2004, vol. 108, p. - 1236-1242
28. Tonooka T., Aoki E., Yoshioka T. et al. A novel mutant gene for (1-3, 1-4) - β-D-glucanless grain on barley (Hordeum vulgare L.) chromosome 7H // Breeding Science. - 2009, vol. 59, p. 47-54
29. Zhao K., Aranzana M. J., Kim S. et al. An Arabidopsis example of association mapping in structured samples // PloS Genetics. - 2007, vol. 3, iss. 1, p. 71-84
30. Wang J., Zhang F., Chen J. et al. The changes of β-glucan content and β-glucanase activity in barley before and after malting and their relationships to malt qualities // Food Chemistry. - 2004, vol. 2, p. 223-228