메뉴 건너뛰기




Volumn 51, Issue 9, 2011, Pages 2156-2163

Improving similarity-driven library design: Customized matching and regioselective feature trees

Author keywords

[No Author keywords available]

Indexed keywords

BUILDINGS; FORESTRY;

EID: 80053334931     PISSN: 15499596     EISSN: 1549960X     Source Type: Journal    
DOI: 10.1021/ci200014g     Document Type: Article
Times cited : (5)

References (40)
  • 1
    • 0000145750 scopus 로고
    • Computer storage and retrieval of generic chemical structures in patents. 13. Reduced graph generation
    • Gillet, V.; Downs, G.; Holliday, J.; Lynch, M.; Dethlefsen, W. Computer storage and retrieval of generic chemical structures in patents. 13. Reduced graph generation J. Chem. Inf. Model. 1991, 31, 260-270
    • (1991) J. Chem. Inf. Model. , vol.31 , pp. 260-270
    • Gillet, V.1    Downs, G.2    Holliday, J.3    Lynch, M.4    Dethlefsen, W.5
  • 4
    • 33751391841 scopus 로고
    • Automatic identification of molecular similarity using reduced-graph representation of chemical structure
    • Takahashi, Y.; Sukekawa, M.; Sasaki, S. Automatic identification of molecular similarity using reduced-graph representation of chemical structure J. Chem. Inf. Model. 1992, 32, 639-643
    • (1992) J. Chem. Inf. Model. , vol.32 , pp. 639-643
    • Takahashi, Y.1    Sukekawa, M.2    Sasaki, S.3
  • 5
    • 0028194401 scopus 로고
    • Similarity searching on CAS Registry substances. 2. 2D structural similarity
    • Fisanick, W.; Lipkus, A.; Rusinko, A. Similarity searching on CAS Registry substances. 2. 2D structural similarity J. Chem. Inf. Model. 1994, 34, 130-140
    • (1994) J. Chem. Inf. Model. , vol.34 , pp. 130-140
    • Fisanick, W.1    Lipkus, A.2    Rusinko, A.3
  • 6
    • 10044265608 scopus 로고    scopus 로고
    • The Reduced Graph Descriptor in Virtual Screening and Data-Driven Clustering of High-Throughput Screening Data
    • Harper, G.; Bravi, G.; Pickett, S.; Hussain, J.; Green, D. The Reduced Graph Descriptor in Virtual Screening and Data-Driven Clustering of High-Throughput Screening Data J. Chem. Inf. Model. 2004, 44, 2145-2156
    • (2004) J. Chem. Inf. Model. , vol.44 , pp. 2145-2156
    • Harper, G.1    Bravi, G.2    Pickett, S.3    Hussain, J.4    Green, D.5
  • 7
    • 0342645323 scopus 로고    scopus 로고
    • Use of structure-activity data to compare structure-based clustering methods and descriptors for use in compound selection
    • Brown, R.; Martin, Y. Use of Structure-Activity Data To Compare Structure-Based Clustering Methods and Descriptors for Use in Compound Selection J. Chem. Inf. Model. 1996, 36, 572-584 (Pubitemid 126539358)
    • (1996) Journal of Chemical Information and Computer Sciences , vol.36 , Issue.3 , pp. 572-584
    • Brown, R.D.1    Martin, Y.C.2
  • 8
    • 5244364312 scopus 로고    scopus 로고
    • The information content of 2D and 3D structural descriptors relevant to ligand-receptor binding
    • Brown, R.; Martin, Y. The Information Content of 2D and 3D Structural Descriptors Relevant to Ligand-Receptor Binding J. Chem. Inf. Model. 1997, 37, 1-9 (Pubitemid 127601574)
    • (1997) Journal of Chemical Information and Computer Sciences , vol.37 , Issue.1 , pp. 1-9
    • Brown, R.D.1    Martin, Y.C.2
  • 9
    • 0030943408 scopus 로고    scopus 로고
    • Selecting optimally diverse compounds from structure databases: A validation study of two-dimensional and three-dimensional molecular descriptors
    • DOI 10.1021/jm960352+
    • Matter, H. Selecting optimally diverse compounds from structure databases: a validation study of two-dimensional and three-dimensional molecular descriptors J. Med. Chem. 1997, 40, 1219-1229 (Pubitemid 27175101)
    • (1997) Journal of Medicinal Chemistry , vol.40 , Issue.8 , pp. 1219-1229
    • Matter, H.1
  • 10
    • 43049096782 scopus 로고    scopus 로고
    • Similarity searching and scaffold hopping in synthetically accessible combinatorial chemistry spaces
    • DOI 10.1021/jm0707727
    • Boehm, M.; Wu, T.-Y.; Claussen, H.; Lemmen, C. Similarity searching and scaffold hopping in synthetically accessible combinatorial chemistry spaces J. Med. Chem. 2008, 51, 2468-2480 (Pubitemid 351628508)
    • (2008) Journal of Medicinal Chemistry , vol.51 , Issue.8 , pp. 2468-2480
    • Boehm, M.1    Wu, T.-Y.2    Haussen, H.3    Lemmen, C.4
  • 13
    • 0032149905 scopus 로고    scopus 로고
    • Feature trees: A new molecular similarity measure based on tree matching
    • Rarey, M.; Dixon, J. Feature trees: a new molecular similarity measure based on tree matching J. Comput.-Aided Mol. Des. 1998, 12, 471-490 (Pubitemid 128512818)
    • (1998) Journal of Computer-Aided Molecular Design , vol.12 , Issue.5 , pp. 471-490
    • Rarey, M.1    Dixon, J.S.2
  • 14
    • 34547704655 scopus 로고    scopus 로고
    • Feature Trees: Theory and Applications from Large-Scale Virtual Screening to Data Analysis
    • Langer, T. Hoffmann, R. Wiley-VCH: Weinheim, Germany
    • Rarey, M.; Hindle, S.; Maass, P.; Metz, G.; Rummey, C.; Zimmermann, M. Feature Trees: Theory and Applications from Large-Scale Virtual Screening to Data Analysis. In Pharmacophores and Pharmacophore Search; Langer, T.; Hoffmann, R., Eds.; Wiley-VCH: Weinheim, Germany, 2005; Vol. 32; pp 81-116.
    • (2005) Pharmacophores and Pharmacophore Search , vol.32 , pp. 81-116
    • Rarey, M.1    Hindle, S.2    Maass, P.3    Metz, G.4    Rummey, C.5    Zimmermann, M.6
  • 15
    • 34547692851 scopus 로고    scopus 로고
    • SwiFT: An index structure for reduced graph descriptors in virtual screening and clustering
    • DOI 10.1021/ci700007b
    • Fischer, J. R.; Rarey, M. SwiFT: an index structure for reduced graph descriptors in virtual screening and clustering J. Chem. Inf. Model. 2007, 47, 1341-1353 (Pubitemid 47210038)
    • (2007) Journal of Chemical Information and Modeling , vol.47 , Issue.4 , pp. 1341-1353
    • Robert Fischer, J.1    Rarey, M.2
  • 17
    • 0034923575 scopus 로고    scopus 로고
    • Similarity searching in large combinatorial chemistry spaces
    • DOI 10.1023/A:1011144622059
    • Rarey, M.; Stahl, M. Similarity searching in large combinatorial chemistry spaces J. Comput.-Aided Mol. Des. 2001, 15, 497-520 (Pubitemid 32680852)
    • (2001) Journal of Computer-Aided Molecular Design , vol.15 , Issue.6 , pp. 497-520
    • Rarey, M.1    Stahl, M.2
  • 18
    • 0032058905 scopus 로고    scopus 로고
    • RECAP - Retrosynthetic Combinatorial Analysis Procedure: A powerful new technique for identifying privileged molecular fragments with useful applications in combinatorial chemistry
    • Lewell, X.; Judd, D.; Watson, S.; Hann, M. RECAP-retrosynthetic combinatorial analysis procedure: a powerful new technique for identifying privileged molecular fragments with useful applications in combinatorial chemistry J. Chem. Inf. Comput. Sci. 1998, 38, 511-522 (Pubitemid 128594467)
    • (1998) Journal of Chemical Information and Computer Sciences , vol.38 , Issue.3 , pp. 511-522
    • Lewell, X.Q.1    Judd, D.B.2    Watson, S.P.3    Hann, M.M.4
  • 20
    • 54849424115 scopus 로고    scopus 로고
    • On the art of compiling and using drug-like chemical fragment spaces
    • Degen, J.; Wegscheid-Gerlach, C.; Zaliani, A.; Rarey, M. On the art of compiling and using drug-like chemical fragment spaces ChemMedChem 2008, 3, 1503-1507
    • (2008) ChemMedChem , vol.3 , pp. 1503-1507
    • Degen, J.1    Wegscheid-Gerlach, C.2    Zaliani, A.3    Rarey, M.4
  • 21
    • 75749102187 scopus 로고    scopus 로고
    • LoFT: Similarity-Driven Multiobjective Focused Library Design
    • Fischer, J.; Lessel, U.; Rarey, M. LoFT: Similarity-Driven Multiobjective Focused Library Design J. Chem. Inf. Model. 2010, 50, 1-21
    • (2010) J. Chem. Inf. Model. , vol.50 , pp. 1-21
    • Fischer, J.1    Lessel, U.2    Rarey, M.3
  • 24
    • 2942724625 scopus 로고    scopus 로고
    • Automated drawing of structural molecular formulas under constraints
    • Fricker, P.; Gastreich, M.; Rarey, M. Automated drawing of structural molecular formulas under constraints J. Chem. Inf. Comput. Sci. 2004, 44, 1065-1078
    • (2004) J. Chem. Inf. Comput. Sci. , vol.44 , pp. 1065-1078
    • Fricker, P.1    Gastreich, M.2    Rarey, M.3
  • 25
    • 0008556523 scopus 로고
    • On the Theory of Dynamic Programming
    • Bellman, R. On the Theory of Dynamic Programming Proc. Natl. Acad. Sci. U.S.A. 1952, 38, 716-719
    • (1952) Proc. Natl. Acad. Sci. U.S.A. , vol.38 , pp. 716-719
    • Bellman, R.1
  • 26
    • 0020587209 scopus 로고
    • 3) of histamine receptor
    • Arrang, J.-M.; Garbarg, M.; Schwartz, J.-C. Auto-inhibition of brain histamine release mediated by a novel class (H3) of histamine receptor Nature 1983, 302, 832-837 (Pubitemid 13125123)
    • (1983) Nature , vol.302 , Issue.5911 , pp. 832-837
    • Arrang, J.M.1    Garbarg, M.2    Schwartz, J.C.3
  • 27
    • 29144437722 scopus 로고    scopus 로고
    • 3 receptor antagonists reach out for the clinic
    • DOI 10.1016/S1359-6446(05)03625-1, PII S1359644605036251
    • Celanire, S.; Wijtmans, M.; Talaga, P.; Leurs, R.; de Esch, I. Keynote review: histamine H3 receptor antagonists reach out for the clinic Drug Discovery Today 2005, 10, 1613-1627 (Pubitemid 41817610)
    • (2005) Drug Discovery Today , vol.10 , Issue.23-24 , pp. 1613-1627
    • Celanire, S.1    Wijtmans, M.2    Talaga, P.3    Leurs, R.4    De Esch, I.J.P.5
  • 29
    • 33748306055 scopus 로고    scopus 로고
    • 3-antagonist receptor activity-A new scaffold discovered by lead-hopping from cinnamic acid amides
    • DOI 10.1016/j.bmcl.2006.07.093, PII S0960894X06008869
    • Lau, J.; Jeppesen, C.; Rimvall, K.; Hohlweg, R. Ureas with histamine H3-antagonist receptor activity-a new scaffold discovered by lead-hopping from cinnamic acid amides Bioorg. Med. Chem. Lett. 2006, 16, 5303-5308 (Pubitemid 44332223)
    • (2006) Bioorganic and Medicinal Chemistry Letters , vol.16 , Issue.20 , pp. 5303-5308
    • Lau, J.F.1    Jeppesen, C.B.2    Rimvall, K.3    Hohlweg, R.4
  • 31
    • 0029317904 scopus 로고
    • Cyclin-dependent protein kinases: Key regulators of the eukaryotic cell cycle
    • Nigg, E. Cyclin-dependent protein kinases: key regulators of the eukaryotic cell cycle Bioessays 1995, 17, 471-480
    • (1995) Bioessays , vol.17 , pp. 471-480
    • Nigg, E.1
  • 32
    • 0035743983 scopus 로고    scopus 로고
    • Perspectives for cancer therapies with cdk2 inhibitors
    • DOI 10.1054/drup.2001.0224
    • Wadler, S. Perspectives for cancer therapies with cdk2 inhibitors Drug Resist. Update 2001, 4, 347-367 (Pubitemid 34746870)
    • (2001) Drug Resistance Updates , vol.4 , Issue.6 , pp. 347-367
    • Wadler, S.1
  • 34
    • 0034988970 scopus 로고    scopus 로고
    • Inhibitor binding to active and inactive CDK2: The crystal structure of CDK2-cyclin A/indirubin-5-sulphonate
    • DOI 10.1016/S0969-2126(01)00598-6, PII S0969212601005986
    • Davies, T.; Tunnah, P.; Meijer, L.; Marko, D.; Eisenbrand, G.; Endicott, J.; Noble, M. Inhibitor binding to active and inactive CDK2: the crystal structure of CDK2-cyclin A/indirubin-5-sulphonate Structure 2001, 9, 389-397 (Pubitemid 32497266)
    • (2001) Structure , vol.9 , Issue.5 , pp. 389-397
    • Davies, T.G.1    Tunnah, P.2    Meijer, L.3    Marko, D.4    Eisenbrand, G.5    Endicott, J.A.6    Noble, M.E.M.7
  • 35
    • 80053324716 scopus 로고    scopus 로고
    • version 3.1.0; OpenEye Scientific Software: Santa Fe, NM
    • ROCS, version 3.1.0; OpenEye Scientific Software: Santa Fe, NM, 2010.
    • (2010) ROCS
  • 36
    • 80053340540 scopus 로고    scopus 로고
    • version 2010.10; Chemical Computing Group: Quebec, Canada
    • MOE, version 2010.10; Chemical Computing Group: Quebec, Canada, 2010.
    • (2010) MOE
  • 38
    • 0034684780 scopus 로고    scopus 로고
    • Solid-phase synthesis of 2,3- disubstituted indoles: Discovery of a novel, high-affinity, selective h5-HT2A antagonist
    • Smith, A.; Stevenson, G.; Lewis, S.; Patel, S.; Castro, J. Solid-phase synthesis of 2,3- disubstituted indoles: discovery of a novel, high-affinity, selective h5-HT2A antagonist Bioorg. Med. Chem. Lett. 2000, 10, 2693-2696
    • (2000) Bioorg. Med. Chem. Lett. , vol.10 , pp. 2693-2696
    • Smith, A.1    Stevenson, G.2    Lewis, S.3    Patel, S.4    Castro, J.5
  • 39
    • 0032488013 scopus 로고    scopus 로고
    • FLEXS: A method for fast flexible ligand superposition
    • DOI 10.1021/jm981037l
    • Lemmen, C.; Lengauer, T.; Klebe, G. FLEXS: a method for fast flexible ligand superposition J. Med. Chem. 1998, 41, 4502-4520 (Pubitemid 28516449)
    • (1998) Journal of Medicinal Chemistry , vol.41 , Issue.23 , pp. 4502-4520
    • Lemmen, C.1    Lengauer, T.2    Klebe, G.3
  • 40
    • 80053329557 scopus 로고    scopus 로고
    • version 2.0.0; BioSolveIT: St. Augustin, Germany
    • FlexS, version 2.0.0; BioSolveIT: St. Augustin, Germany, 2010.
    • (2010) FlexS


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.