-
1
-
-
0032429154
-
A DNA polymorphism discovery resource for research on human genetic variation
-
Collins F.S., Brooks L.D., Chakravarti A. A DNA polymorphism discovery resource for research on human genetic variation. Genome Res. 1998, 8:1229-1231.
-
(1998)
Genome Res.
, vol.8
, pp. 1229-1231
-
-
Collins, F.S.1
Brooks, L.D.2
Chakravarti, A.3
-
2
-
-
0032991552
-
Characterization of single-nucleotide polymorphisms in coding regions of human genes
-
Cargill M., Altshuler D., Ireland J., Sklar P., Ardlie K., Patil N., Shaw N., Lane C.R., Lim E.P., Kalyanaraman N., Nemesh J., Ziaugra L., Friedland L., Rolfe A., Warrington J., Lipshutz R., Daley G.Q., Lander E.S. Characterization of single-nucleotide polymorphisms in coding regions of human genes. Nat. Genet. 1999, 22:231-238.
-
(1999)
Nat. Genet.
, vol.22
, pp. 231-238
-
-
Cargill, M.1
Altshuler, D.2
Ireland, J.3
Sklar, P.4
Ardlie, K.5
Patil, N.6
Shaw, N.7
Lane, C.R.8
Lim, E.P.9
Kalyanaraman, N.10
Nemesh, J.11
Ziaugra, L.12
Friedland, L.13
Rolfe, A.14
Warrington, J.15
Lipshutz, R.16
Daley, G.Q.17
Lander, E.S.18
-
3
-
-
79959471457
-
Bioinformatics challenges for personalized medicine
-
Fernald G.H., Capriotti E., Daneshjou R., Karczewski K.J., Altman R.B. Bioinformatics challenges for personalized medicine. Bioinformatics 2011, 27:1741-1748.
-
(2011)
Bioinformatics
, vol.27
, pp. 1741-1748
-
-
Fernald, G.H.1
Capriotti, E.2
Daneshjou, R.3
Karczewski, K.J.4
Altman, R.B.5
-
4
-
-
35348983887
-
A second generation human haplotype map of over 3.1million SNPs
-
Frazer K.A., Ballinger D.G., Cox D.R., Hinds D.A., Stuve L.L., Gibbs R.A., Belmont J.W., Boudreau A., Hardenbol P., Leal S.M., Pasternak S., Wheeler D.A., Willis T.D., Yu F., Yang H., Zeng C., Gao Y., Hu H., Hu W., Li C., Lin W., Liu S., Pan H., Tang X., Wang J., Wang W., Yu J., Zhang B., Zhang Q., Zhao H., Zhou J., Gabriel S.B., Barry R., Blumenstiel B., Camargo A., Defelice M., Faggart M., Goyette M., Gupta S., Moore J., Nguyen H., Onofrio R.C., Parkin M., Roy J., Stahl E., Winchester E., Ziaugra L., Altshuler D., Shen Y., Yao Z., Huang W., Chu X., He Y., Jin L., Liu Y., Sun W., Wang H., Wang Y., Xiong X., Xu L., Waye M.M., Tsui S.K., Xue H., Wong J.T., Galver L.M., Fan J.B., Gunderson K., Murray S.S., Oliphant A.R., Chee M.S., Montpetit A., Chagnon F., Ferretti V., Leboeuf M., Olivier J.F., Phillips M.S., Roumy S., Sallee C., Verner A., Hudson T.J., Kwok P.Y., Cai D., Koboldt D.C., Miller R.D., Pawlikowska L., Taillon-Miller P., Xiao M., Tsui L.C., Mak W., Song Y.Q., Tam P.K., Nakamura Y., Kawaguchi T., Kitamoto T., Morizono T., Nagashima A., Ohnishi Y., Sekine A., Tanaka T., Tsunoda T., et al. A second generation human haplotype map of over 3.1million SNPs. Nature 2007, 449:851-861.
-
(2007)
Nature
, vol.449
, pp. 851-861
-
-
Frazer, K.A.1
Ballinger, D.G.2
Cox, D.R.3
Hinds, D.A.4
Stuve, L.L.5
Gibbs, R.A.6
Belmont, J.W.7
Boudreau, A.8
Hardenbol, P.9
Leal, S.M.10
Pasternak, S.11
Wheeler, D.A.12
Willis, T.D.13
Yu, F.14
Yang, H.15
Zeng, C.16
Gao, Y.17
Hu, H.18
Hu, W.19
Li, C.20
Lin, W.21
Liu, S.22
Pan, H.23
Tang, X.24
Wang, J.25
Wang, W.26
Yu, J.27
Zhang, B.28
Zhang, Q.29
Zhao, H.30
Zhou, J.31
Gabriel, S.B.32
Barry, R.33
Blumenstiel, B.34
Camargo, A.35
Defelice, M.36
Faggart, M.37
Goyette, M.38
Gupta, S.39
Moore, J.40
Nguyen, H.41
Onofrio, R.C.42
Parkin, M.43
Roy, J.44
Stahl, E.45
Winchester, E.46
Ziaugra, L.47
Altshuler, D.48
Shen, Y.49
Yao, Z.50
Huang, W.51
Chu, X.52
He, Y.53
Jin, L.54
Liu, Y.55
Sun, W.56
Wang, H.57
Wang, Y.58
Xiong, X.59
Xu, L.60
Waye, M.M.61
Tsui, S.K.62
Xue, H.63
Wong, J.T.64
Galver, L.M.65
Fan, J.B.66
Gunderson, K.67
Murray, S.S.68
Oliphant, A.R.69
Chee, M.S.70
Montpetit, A.71
Chagnon, F.72
Ferretti, V.73
Leboeuf, M.74
Olivier, J.F.75
Phillips, M.S.76
Roumy, S.77
Sallee, C.78
Verner, A.79
Hudson, T.J.80
Kwok, P.Y.81
Cai, D.82
Koboldt, D.C.83
Miller, R.D.84
Pawlikowska, L.85
Taillon-Miller, P.86
Xiao, M.87
Tsui, L.C.88
Mak, W.89
Song, Y.Q.90
Tam, P.K.91
Nakamura, Y.92
Kawaguchi, T.93
Kitamoto, T.94
Morizono, T.95
Nagashima, A.96
Ohnishi, Y.97
Sekine, A.98
Tanaka, T.99
more..
-
5
-
-
55849091378
-
GENETICS. The Human Variome Project
-
Cotton R.G., Auerbach A.D., Axton M., Barash C.I., Berkovic S.F., Brookes A.J., Burn J., Cutting G., den Dunnen J.T., Flicek P., Freimer N., Greenblatt M.S., Howard H.J., Katz M., Macrae F.A., Maglott D., Moslein G., Povey S., Ramesar R.S., Richards C.S., Seminara D., Smith T.D., Sobrido M.J., Solbakk J.H., Tanzi R.E., Tavtigian S.V., Taylor G.R., Utsunomiya J., Watson M. GENETICS. The Human Variome Project. Science 2008, 322:861-862.
-
(2008)
Science
, vol.322
, pp. 861-862
-
-
Cotton, R.G.1
Auerbach, A.D.2
Axton, M.3
Barash, C.I.4
Berkovic, S.F.5
Brookes, A.J.6
Burn, J.7
Cutting, G.8
den Dunnen, J.T.9
Flicek, P.10
Freimer, N.11
Greenblatt, M.S.12
Howard, H.J.13
Katz, M.14
Macrae, F.A.15
Maglott, D.16
Moslein, G.17
Povey, S.18
Ramesar, R.S.19
Richards, C.S.20
Seminara, D.21
Smith, T.D.22
Sobrido, M.J.23
Solbakk, J.H.24
Tanzi, R.E.25
Tavtigian, S.V.26
Taylor, G.R.27
Utsunomiya, J.28
Watson, M.29
more..
-
6
-
-
0032524383
-
Large-scale identification, mapping, and genotyping of single-nucleotide polymorphisms in the human genome
-
Wang D.G., Fan J.B., Siao C.J., Berno A., Young P., Sapolsky R., Ghandour G., Perkins N., Winchester E., Spencer J., Kruglyak L., Stein L., Hsie L., Topaloglou T., Hubbell E., Robinson E., Mittmann M., Morris M.S., Shen N., Kilburn D., Rioux J., Nusbaum C., Rozen S., Hudson T.J., Lipshutz R., Chee M., Lander E.S. Large-scale identification, mapping, and genotyping of single-nucleotide polymorphisms in the human genome. Science 1998, 280:1077-1082.
-
(1998)
Science
, vol.280
, pp. 1077-1082
-
-
Wang, D.G.1
Fan, J.B.2
Siao, C.J.3
Berno, A.4
Young, P.5
Sapolsky, R.6
Ghandour, G.7
Perkins, N.8
Winchester, E.9
Spencer, J.10
Kruglyak, L.11
Stein, L.12
Hsie, L.13
Topaloglou, T.14
Hubbell, E.15
Robinson, E.16
Mittmann, M.17
Morris, M.S.18
Shen, N.19
Kilburn, D.20
Rioux, J.21
Nusbaum, C.22
Rozen, S.23
Hudson, T.J.24
Lipshutz, R.25
Chee, M.26
Lander, E.S.27
more..
-
7
-
-
78650094076
-
1000 genomes project consortium, a map of human genome variation from population-scale sequencing
-
1000 genomes project consortium, a map of human genome variation from population-scale sequencing. Nature 2010, 467:1061-1073.
-
(2010)
Nature
, vol.467
, pp. 1061-1073
-
-
-
8
-
-
84969213492
-
Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls
-
Consortium W.T.C.C. Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls. Nature 2007, 447:661-678.
-
(2007)
Nature
, vol.447
, pp. 661-678
-
-
Consortium, W.T.C.C.1
-
9
-
-
0035173378
-
DbSNP: the NCBI database of genetic variation
-
Sherry S.T., Ward M.H., Kholodov M., Baker J., Phan L., Smigielski E.M., Sirotkin K. dbSNP: the NCBI database of genetic variation. Nucleic Acids Res. 2001, 29:308-311.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 308-311
-
-
Sherry, S.T.1
Ward, M.H.2
Kholodov, M.3
Baker, J.4
Phan, L.5
Smigielski, E.M.6
Sirotkin, K.7
-
10
-
-
40549095676
-
Annotating single amino acid polymorphisms in the UniProt/Swiss-Prot knowledgebase
-
Yip Y.L., Famiglietti M., Gos A., Duek P.D., David F.P., Gateau A., Bairoch A. Annotating single amino acid polymorphisms in the UniProt/Swiss-Prot knowledgebase. Hum. Mutat. 2008, 29:361-366.
-
(2008)
Hum. Mutat.
, vol.29
, pp. 361-366
-
-
Yip, Y.L.1
Famiglietti, M.2
Gos, A.3
Duek, P.D.4
David, F.P.5
Gateau, A.6
Bairoch, A.7
-
11
-
-
77953446523
-
The Human Gene Mutation Database: 2008 update
-
Stenson P.D., Mort M., Ball E.V., Howells K., Phillips A.D., Thomas N.S., Cooper D.N. The Human Gene Mutation Database: 2008 update. Genome Med. 2009, 1:13.
-
(2009)
Genome Med.
, vol.1
, pp. 13
-
-
Stenson, P.D.1
Mort, M.2
Ball, E.V.3
Howells, K.4
Phillips, A.D.5
Thomas, N.S.6
Cooper, D.N.7
-
12
-
-
60749104999
-
Next generation tools for the annotation of human SNPs
-
Karchin R. Next generation tools for the annotation of human SNPs. Brief. Bioinform. 2009, 10:35-52.
-
(2009)
Brief. Bioinform.
, vol.10
, pp. 35-52
-
-
Karchin, R.1
-
13
-
-
17244367767
-
Bioinformatics approaches and resources for single nucleotide polymorphism functional analysis
-
Mooney S. Bioinformatics approaches and resources for single nucleotide polymorphism functional analysis. Brief. Bioinform. 2005, 6:44-56.
-
(2005)
Brief. Bioinform.
, vol.6
, pp. 44-56
-
-
Mooney, S.1
-
14
-
-
55549145156
-
In silico analysis of missense substitutions using sequence-alignment based methods
-
Tavtigian S.V., Greenblatt M.S., Lesueur F., Byrnes G.B. In silico analysis of missense substitutions using sequence-alignment based methods. Hum. Mutat. 2008, 29:1327-1336.
-
(2008)
Hum. Mutat.
, vol.29
, pp. 1327-1336
-
-
Tavtigian, S.V.1
Greenblatt, M.S.2
Lesueur, F.3
Byrnes, G.B.4
-
15
-
-
0043122919
-
SIFT: Predicting amino acid changes that affect protein function
-
Ng P.C., Henikoff S. SIFT: Predicting amino acid changes that affect protein function. Nucleic Acids Res. 2003, 31:3812-3814.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3812-3814
-
-
Ng, P.C.1
Henikoff, S.2
-
16
-
-
0036713510
-
Human non-synonymous SNPs: server and survey
-
Ramensky V., Bork P., Sunyaev S. Human non-synonymous SNPs: server and survey. Nucleic Acids Res. 2002, 30:3894-3900.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 3894-3900
-
-
Ramensky, V.1
Bork, P.2
Sunyaev, S.3
-
17
-
-
7444227970
-
Coding single-nucleotide polymorphisms associated with complex vs. Mendelian disease: evolutionary evidence for differences in molecular effects
-
Thomas P.D., Kejariwal A. Coding single-nucleotide polymorphisms associated with complex vs. Mendelian disease: evolutionary evidence for differences in molecular effects. Proc. Natl. Acad. Sci. U. S. A. 2004, 101:15398-15403.
-
(2004)
Proc. Natl. Acad. Sci. U. S. A.
, vol.101
, pp. 15398-15403
-
-
Thomas, P.D.1
Kejariwal, A.2
-
18
-
-
53749105617
-
SNAP predicts effect of mutations on protein function
-
Bromberg Y., Yachdav G., Rost B. SNAP predicts effect of mutations on protein function. Bioinformatics 2008, 24:2397-2398.
-
(2008)
Bioinformatics
, vol.24
, pp. 2397-2398
-
-
Bromberg, Y.1
Yachdav, G.2
Rost, B.3
-
19
-
-
25144496606
-
PMUT: a web-based tool for the annotation of pathological mutations on proteins
-
Ferrer-Costa C., Gelpi J.L., Zamakola L., Parraga I., de la Cruz X., Orozco M. PMUT: a web-based tool for the annotation of pathological mutations on proteins. Bioinformatics 2005, 21:3176-3178.
-
(2005)
Bioinformatics
, vol.21
, pp. 3176-3178
-
-
Ferrer-Costa, C.1
Gelpi, J.L.2
Zamakola, L.3
Parraga, I.4
de la Cruz, X.5
Orozco, M.6
-
20
-
-
33745862379
-
Predicting deleterious nsSNPs: an analysis of sequence and structural attributes
-
Dobson R.J., Munroe P.B., Caulfield M.J., Saqi M.A. Predicting deleterious nsSNPs: an analysis of sequence and structural attributes. BMC Bioinformatics 2006, 7:217.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 217
-
-
Dobson, R.J.1
Munroe, P.B.2
Caulfield, M.J.3
Saqi, M.A.4
-
21
-
-
0344033683
-
A comparative study of machine-learning methods to predict the effects of single nucleotide polymorphisms on protein function
-
Krishnan V.G., Westhead D.R. A comparative study of machine-learning methods to predict the effects of single nucleotide polymorphisms on protein function. Bioinformatics 2003, 19:2199-2209.
-
(2003)
Bioinformatics
, vol.19
, pp. 2199-2209
-
-
Krishnan, V.G.1
Westhead, D.R.2
-
22
-
-
19544392545
-
Prediction of the phenotypic effects of non-synonymous single nucleotide polymorphisms using structural and evolutionary information
-
Bao L., Cui Y. Prediction of the phenotypic effects of non-synonymous single nucleotide polymorphisms using structural and evolutionary information. Bioinformatics 2005, 21:2185-2190.
-
(2005)
Bioinformatics
, vol.21
, pp. 2185-2190
-
-
Bao, L.1
Cui, Y.2
-
23
-
-
69249115697
-
Cancer-specific high-throughput annotation of somatic mutations: computational prediction of driver missense mutations
-
Carter H., Chen S., Isik L., Tyekucheva S., Velculescu V.E., Kinzler K.W., Vogelstein B., Karchin R. Cancer-specific high-throughput annotation of somatic mutations: computational prediction of driver missense mutations. Cancer Res. 2009, 69:6660-6667.
-
(2009)
Cancer Res.
, vol.69
, pp. 6660-6667
-
-
Carter, H.1
Chen, S.2
Isik, L.3
Tyekucheva, S.4
Velculescu, V.E.5
Kinzler, K.W.6
Vogelstein, B.7
Karchin, R.8
-
24
-
-
34547566118
-
CanPredict: a computational tool for predicting cancer-associated missense mutations
-
Kaminker J.S., Zhang Y., Watanabe C., Zhang Z. CanPredict: a computational tool for predicting cancer-associated missense mutations. Nucleic Acids Res. 2007, 35:W595-W598.
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Kaminker, J.S.1
Zhang, Y.2
Watanabe, C.3
Zhang, Z.4
-
25
-
-
70350671733
-
Automated inference of molecular mechanisms of disease from amino acid substitutions
-
Li B., Krishnan V.G., Mort M.E., Xin F., Kamati K.K., Cooper D.N., Mooney S.D., Radivojac P. Automated inference of molecular mechanisms of disease from amino acid substitutions. Bioinformatics 2009, 25:2744-2750.
-
(2009)
Bioinformatics
, vol.25
, pp. 2744-2750
-
-
Li, B.1
Krishnan, V.G.2
Mort, M.E.3
Xin, F.4
Kamati, K.K.5
Cooper, D.N.6
Mooney, S.D.7
Radivojac, P.8
-
26
-
-
77954290402
-
MuD: an interactive web server for the prediction of non-neutral substitutions using protein structural data
-
Wainreb G., Ashkenazy H., Bromberg Y., Starovolsky-Shitrit A., Haliloglu T., Ruppin E., Avraham K.B., Rost B., Ben-Tal N. MuD: an interactive web server for the prediction of non-neutral substitutions using protein structural data. Nucleic Acids Res. 2010, 38(Suppl):W523-W528.
-
(2010)
Nucleic Acids Res.
, vol.38
, Issue.SUPPL
-
-
Wainreb, G.1
Ashkenazy, H.2
Bromberg, Y.3
Starovolsky-Shitrit, A.4
Haliloglu, T.5
Ruppin, E.6
Avraham, K.B.7
Rost, B.8
Ben-Tal, N.9
-
27
-
-
32044453591
-
Identification and analysis of deleterious human SNPs
-
Yue P., Moult J. Identification and analysis of deleterious human SNPs. J. Mol. Biol. 2006, 356:1263-1274.
-
(2006)
J. Mol. Biol.
, vol.356
, pp. 1263-1274
-
-
Yue, P.1
Moult, J.2
-
28
-
-
67749137351
-
Functional annotations improve the predictive score of human disease-related mutations in proteins
-
Calabrese R., Capriotti E., Fariselli P., Martelli P.L., Casadio R. Functional annotations improve the predictive score of human disease-related mutations in proteins. Hum. Mutat. 2009, 30:1237-1244.
-
(2009)
Hum. Mutat.
, vol.30
, pp. 1237-1244
-
-
Calabrese, R.1
Capriotti, E.2
Fariselli, P.3
Martelli, P.L.4
Casadio, R.5
-
29
-
-
38149120394
-
Use of estimated evolutionary strength at the codon level improves the prediction of disease-related protein mutations in humans
-
Capriotti E., Arbiza L., Casadio R., Dopazo J., Dopazo H., Marti-Renom M.A. Use of estimated evolutionary strength at the codon level improves the prediction of disease-related protein mutations in humans. Hum. Mutat. 2008, 29:198-204.
-
(2008)
Hum. Mutat.
, vol.29
, pp. 198-204
-
-
Capriotti, E.1
Arbiza, L.2
Casadio, R.3
Dopazo, J.4
Dopazo, H.5
Marti-Renom, M.A.6
-
30
-
-
33751013750
-
Predicting the insurgence of human genetic diseases associated to single point protein mutations with support vector machines and evolutionary information
-
Capriotti E., Calabrese R., Casadio R. Predicting the insurgence of human genetic diseases associated to single point protein mutations with support vector machines and evolutionary information. Bioinformatics 2006, 22:2729-2734.
-
(2006)
Bioinformatics
, vol.22
, pp. 2729-2734
-
-
Capriotti, E.1
Calabrese, R.2
Casadio, R.3
-
31
-
-
20844461337
-
LS-SNP: large-scale annotation of coding non-synonymous SNPs based on multiple information sources
-
Karchin R., Diekhans M., Kelly L., Thomas D.J., Pieper U., Eswar N., Haussler D., Sali A. LS-SNP: large-scale annotation of coding non-synonymous SNPs based on multiple information sources. Bioinformatics 2005, 21:2814-2820.
-
(2005)
Bioinformatics
, vol.21
, pp. 2814-2820
-
-
Karchin, R.1
Diekhans, M.2
Kelly, L.3
Thomas, D.J.4
Pieper, U.5
Eswar, N.6
Haussler, D.7
Sali, A.8
-
32
-
-
11844281294
-
A neural-network-based method for predicting protein stability changes upon single point mutations
-
Capriotti E., Fariselli P., Casadio R. A neural-network-based method for predicting protein stability changes upon single point mutations. Bioinformatics 2004, 20(Suppl 1):I63-I68.
-
(2004)
Bioinformatics
, vol.20
, Issue.SUPPL 1
-
-
Capriotti, E.1
Fariselli, P.2
Casadio, R.3
-
33
-
-
23144461249
-
I-Mutant2.0: predicting stability changes upon mutation from the protein sequence or structure
-
Capriotti E., Fariselli P., Casadio R. I-Mutant2.0: predicting stability changes upon mutation from the protein sequence or structure. Nucleic Acids Res. 2005, 33:W306-W310.
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Capriotti, E.1
Fariselli, P.2
Casadio, R.3
-
34
-
-
0037249501
-
PANTHER: a browsable database of gene products organized by biological function, using curated protein family and subfamily classification
-
Thomas P.D., Kejariwal A., Campbell M.J., Mi H., Diemer K., Guo N., Ladunga I., Ulitsky-Lazareva B., Muruganujan A., Rabkin S., Vandergriff J.A., Doremieux O. PANTHER: a browsable database of gene products organized by biological function, using curated protein family and subfamily classification. Nucleic Acids Res. 2003, 31:334-341.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 334-341
-
-
Thomas, P.D.1
Kejariwal, A.2
Campbell, M.J.3
Mi, H.4
Diemer, K.5
Guo, N.6
Ladunga, I.7
Ulitsky-Lazareva, B.8
Muruganujan, A.9
Rabkin, S.10
Vandergriff, J.A.11
Doremieux, O.12
-
35
-
-
77953523121
-
Recent advances in neuroblastoma
-
Maris J.M. Recent advances in neuroblastoma. N. Engl. J. Med. 2010, 362:2202-2211.
-
(2010)
N. Engl. J. Med.
, vol.362
, pp. 2202-2211
-
-
Maris, J.M.1
-
36
-
-
73349121354
-
Clinical Cancer Advances 2009: major research advances in cancer treatment, prevention, and screening-a report from the American Society of Clinical Oncology
-
Petrelli N.J., Winer E.P., Brahmer J., Dubey S., Smith S., Thomas C., Vahdat L.T., Obel J., Vogelzang N., Markman M., Sweetenham J.W., Pfister D., Kris M.G., Schuchter L.M., Sawaya R., Raghavan D., Ganz P.A., Kramer B. Clinical Cancer Advances 2009: major research advances in cancer treatment, prevention, and screening-a report from the American Society of Clinical Oncology. J. Clin. Oncol. 2009, 27:6052-6069.
-
(2009)
J. Clin. Oncol.
, vol.27
, pp. 6052-6069
-
-
Petrelli, N.J.1
Winer, E.P.2
Brahmer, J.3
Dubey, S.4
Smith, S.5
Thomas, C.6
Vahdat, L.T.7
Obel, J.8
Vogelzang, N.9
Markman, M.10
Sweetenham, J.W.11
Pfister, D.12
Kris, M.G.13
Schuchter, L.M.14
Sawaya, R.15
Raghavan, D.16
Ganz, P.A.17
Kramer, B.18
-
37
-
-
77951585057
-
Architecture of inherited susceptibility to common cancer
-
Fletcher O., Houlston R.S. Architecture of inherited susceptibility to common cancer. Nat. Rev. Cancer 2011, 10:353-361.
-
(2011)
Nat. Rev. Cancer
, vol.10
, pp. 353-361
-
-
Fletcher, O.1
Houlston, R.S.2
-
38
-
-
33846650692
-
Distinguishing cancer-associated missense mutations from common polymorphisms
-
Kaminker J.S., Zhang Y., Waugh A., Haverty P.M., Peters B., Sebisanovic D., Stinson J., Forrest W.F., Bazan J.F., Seshagiri S., Zhang Z. Distinguishing cancer-associated missense mutations from common polymorphisms. Cancer Res. 2007, 67:465-473.
-
(2007)
Cancer Res.
, vol.67
, pp. 465-473
-
-
Kaminker, J.S.1
Zhang, Y.2
Waugh, A.3
Haverty, P.M.4
Peters, B.5
Sebisanovic, D.6
Stinson, J.7
Forrest, W.F.8
Bazan, J.F.9
Seshagiri, S.10
Zhang, Z.11
-
39
-
-
75549090603
-
The Pfam protein families database
-
Finn R.D., Mistry J., Tate J., Coggill P., Heger A., Pollington J.E., Gavin O.L., Gunasekaran P., Ceric G., Forslund K., Holm L., Sonnhammer E.L., Eddy S.R., Bateman A. The Pfam protein families database. Nucleic Acids Res. 2010, 38:D211-D222.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Finn, R.D.1
Mistry, J.2
Tate, J.3
Coggill, P.4
Heger, A.5
Pollington, J.E.6
Gavin, O.L.7
Gunasekaran, P.8
Ceric, G.9
Forslund, K.10
Holm, L.11
Sonnhammer, E.L.12
Eddy, S.R.13
Bateman, A.14
-
41
-
-
79952764520
-
Performance of mutation pathogenicity prediction methods on missense variants
-
Thusberg J., Olatubosun A., Vihinen M. Performance of mutation pathogenicity prediction methods on missense variants. Hum. Mutat. 2011, 32:358-368.
-
(2011)
Hum. Mutat.
, vol.32
, pp. 358-368
-
-
Thusberg, J.1
Olatubosun, A.2
Vihinen, M.3
-
42
-
-
34147100153
-
Deleterious SNP prediction: be mindful of your training data!
-
Care M.A., Needham C.J., Bulpitt A.J., Westhead D.R. Deleterious SNP prediction: be mindful of your training data!. Bioinformatics 2007, 23:664-672.
-
(2007)
Bioinformatics
, vol.23
, pp. 664-672
-
-
Care, M.A.1
Needham, C.J.2
Bulpitt, A.J.3
Westhead, D.R.4
-
43
-
-
52949127312
-
An integrated genomic analysis of human glioblastoma multiforme
-
Parsons D.W., Jones S., Zhang X., Lin J.C., Leary R.J., Angenendt P., Mankoo P., Carter H., Siu I.M., Gallia G.L., Olivi A., McLendon R., Rasheed B.A., Keir S., Nikolskaya T., Nikolsky Y., Busam D.A., Tekleab H., Diaz L.A., Hartigan J., Smith D.R., Strausberg R.L., Marie S.K., Shinjo S.M., Yan H., Riggins G.J., Bigner D.D., Karchin R., Papadopoulos N., Parmigiani G., Vogelstein B., Velculescu V.E., Kinzler K.W. An integrated genomic analysis of human glioblastoma multiforme. Science 2008, 321:1807-1812.
-
(2008)
Science
, vol.321
, pp. 1807-1812
-
-
Parsons, D.W.1
Jones, S.2
Zhang, X.3
Lin, J.C.4
Leary, R.J.5
Angenendt, P.6
Mankoo, P.7
Carter, H.8
Siu, I.M.9
Gallia, G.L.10
Olivi, A.11
McLendon, R.12
Rasheed, B.A.13
Keir, S.14
Nikolskaya, T.15
Nikolsky, Y.16
Busam, D.A.17
Tekleab, H.18
Diaz, L.A.19
Hartigan, J.20
Smith, D.R.21
Strausberg, R.L.22
Marie, S.K.23
Shinjo, S.M.24
Yan, H.25
Riggins, G.J.26
Bigner, D.D.27
Karchin, R.28
Papadopoulos, N.29
Parmigiani, G.30
Vogelstein, B.31
Velculescu, V.E.32
Kinzler, K.W.33
more..
-
44
-
-
33749993417
-
The consensus coding sequences of human breast and colorectal cancers
-
Sjoblom T., Jones S., Wood L.D., Parsons D.W., Lin J., Barber T.D., Mandelker D., Leary R.J., Ptak J., Silliman N., Szabo S., Buckhaults P., Farrell C., Meeh P., Markowitz S.D., Willis J., Dawson D., Willson J.K., Gazdar A.F., Hartigan J., Wu L., Liu C., Parmigiani G., Park B.H., Bachman K.E., Papadopoulos N., Vogelstein B., Kinzler K.W., Velculescu V.E. The consensus coding sequences of human breast and colorectal cancers. Science 2006, 314:268-274.
-
(2006)
Science
, vol.314
, pp. 268-274
-
-
Sjoblom, T.1
Jones, S.2
Wood, L.D.3
Parsons, D.W.4
Lin, J.5
Barber, T.D.6
Mandelker, D.7
Leary, R.J.8
Ptak, J.9
Silliman, N.10
Szabo, S.11
Buckhaults, P.12
Farrell, C.13
Meeh, P.14
Markowitz, S.D.15
Willis, J.16
Dawson, D.17
Willson, J.K.18
Gazdar, A.F.19
Hartigan, J.20
Wu, L.21
Liu, C.22
Parmigiani, G.23
Park, B.H.24
Bachman, K.E.25
Papadopoulos, N.26
Vogelstein, B.27
Kinzler, K.W.28
Velculescu, V.E.29
more..
-
45
-
-
36248962105
-
The genomic landscapes of human breast and colorectal cancers
-
Wood L.D., Parsons D.W., Jones S., Lin J., Sjoblom T., Leary R.J., Shen D., Boca S.M., Barber T., Ptak J., Silliman N., Szabo S., Dezso Z., Ustyanksky V., Nikolskaya T., Nikolsky Y., Karchin R., Wilson P.A., Kaminker J.S., Zhang Z., Croshaw R., Willis J., Dawson D., Shipitsin M., Willson J.K., Sukumar S., Polyak K., Park B.H., Pethiyagoda C.L., Pant P.V., Ballinger D.G., Sparks A.B., Hartigan J., Smith D.R., Suh E., Papadopoulos N., Buckhaults P., Markowitz S.D., Parmigiani G., Kinzler K.W., Velculescu V.E., Vogelstein B. The genomic landscapes of human breast and colorectal cancers. Science 2007, 318:1108-1113.
-
(2007)
Science
, vol.318
, pp. 1108-1113
-
-
Wood, L.D.1
Parsons, D.W.2
Jones, S.3
Lin, J.4
Sjoblom, T.5
Leary, R.J.6
Shen, D.7
Boca, S.M.8
Barber, T.9
Ptak, J.10
Silliman, N.11
Szabo, S.12
Dezso, Z.13
Ustyanksky, V.14
Nikolskaya, T.15
Nikolsky, Y.16
Karchin, R.17
Wilson, P.A.18
Kaminker, J.S.19
Zhang, Z.20
Croshaw, R.21
Willis, J.22
Dawson, D.23
Shipitsin, M.24
Willson, J.K.25
Sukumar, S.26
Polyak, K.27
Park, B.H.28
Pethiyagoda, C.L.29
Pant, P.V.30
Ballinger, D.G.31
Sparks, A.B.32
Hartigan, J.33
Smith, D.R.34
Suh, E.35
Papadopoulos, N.36
Buckhaults, P.37
Markowitz, S.D.38
Parmigiani, G.39
Kinzler, K.W.40
Velculescu, V.E.41
Vogelstein, B.42
more..
-
46
-
-
78651330430
-
COSMIC: mining complete cancer genomes in the Catalogue of Somatic Mutations in Cancer
-
Forbes S.A., Bindal N., Bamford S., Cole C., Kok C.Y., Beare D., Jia M., Shepherd R., Leung K., Menzies A., Teague J.W., Campbell P.J., Stratton M.R., Futreal P.A. COSMIC: mining complete cancer genomes in the Catalogue of Somatic Mutations in Cancer. Nucleic Acids Res. 2011, 39:D945-D950.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Forbes, S.A.1
Bindal, N.2
Bamford, S.3
Cole, C.4
Kok, C.Y.5
Beare, D.6
Jia, M.7
Shepherd, R.8
Leung, K.9
Menzies, A.10
Teague, J.W.11
Campbell, P.J.12
Stratton, M.R.13
Futreal, P.A.14
-
47
-
-
0037255072
-
The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003
-
Boeckmann B., Bairoch A., Apweiler R., Blatter M.C., Estreicher A., Gasteiger E., Martin M.J., Michoud K., O'Donovan C., Phan I., Pilbout S., Schneider M. The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003. Nucleic Acids Res. 2003, 31:365-370.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 365-370
-
-
Boeckmann, B.1
Bairoch, A.2
Apweiler, R.3
Blatter, M.C.4
Estreicher, A.5
Gasteiger, E.6
Martin, M.J.7
Michoud, K.8
O'Donovan, C.9
Phan, I.10
Pilbout, S.11
Schneider, M.12
-
48
-
-
0034843597
-
AL2CO: calculation of positional conservation in a protein sequence alignment
-
Pei J., Grishin N.V. AL2CO: calculation of positional conservation in a protein sequence alignment. Bioinformatics 2001, 17:700-712.
-
(2001)
Bioinformatics
, vol.17
, pp. 700-712
-
-
Pei, J.1
Grishin, N.V.2
-
49
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul S.F., Madden T.L., Schaffer A.A., Zhang J., Zhang Z., Miller W., Lipman D.J. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 1997, 25:3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
50
-
-
0034069495
-
Gene ontology: tool for the unification of biology. The Gene Ontology Consortium
-
Ashburner M., Ball C.A., Blake J.A., Botstein D., Butler H., Cherry J.M., Davis A.P., Dolinski K., Dwight S.S., Eppig J.T., Harris M.A., Hill D.P., Issel-Tarver L., Kasarskis A., Lewis S., Matese J.C., Richardson J.E., Ringwald M., Rubin G.M., Sherlock G. Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat. Genet. 2000, 25:25-29.
-
(2000)
Nat. Genet.
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
Harris, M.A.11
Hill, D.P.12
Issel-Tarver, L.13
Kasarskis, A.14
Lewis, S.15
Matese, J.C.16
Richardson, J.E.17
Ringwald, M.18
Rubin, G.M.19
Sherlock, G.20
more..
-
51
-
-
12344269924
-
GO::TermFinder-open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes
-
Boyle E.I., Weng S., Gollub J., Jin H., Botstein D., Cherry J.M., Sherlock G. GO::TermFinder-open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes. Bioinformatics 2004, 20:3710-3715.
-
(2004)
Bioinformatics
, vol.20
, pp. 3710-3715
-
-
Boyle, E.I.1
Weng, S.2
Gollub, J.3
Jin, H.4
Botstein, D.5
Cherry, J.M.6
Sherlock, G.7
-
52
-
-
0000667930
-
Training nu-support vector classifiers: theory and algorithms
-
Chang C.C., Lin C.J. Training nu-support vector classifiers: theory and algorithms. Neural Comput. 2001, 13:2119-2147.
-
(2001)
Neural Comput.
, vol.13
, pp. 2119-2147
-
-
Chang, C.C.1
Lin, C.J.2
-
53
-
-
0033931867
-
Assessing the accuracy of prediction algorithms for classification: an overview
-
Baldi P., Brunak S., Chauvin Y., Andersen C.A., Nielsen H. Assessing the accuracy of prediction algorithms for classification: an overview. Bioinformatics 2000, 16:412-424.
-
(2000)
Bioinformatics
, vol.16
, pp. 412-424
-
-
Baldi, P.1
Brunak, S.2
Chauvin, Y.3
Andersen, C.A.4
Nielsen, H.5
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