-
1
-
-
0033954256
-
The protein data bank
-
Berman, H.M., Westbrook, J., Feng, Z., Gilliland, G., Bhat, T.N., Weissig, H., Shindyalov, I.N. and Bourne, P.E. (2000) The Protein Data Bank. Nucleic Acids Res., 28, 235-242.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
2
-
-
0029196973
-
Predicting free energy contributions to the conformational stability of folded proteins from the residue sequence with radial basis function networks
-
Casadio, R., Compiani, M., Fariselli, P. and Vivarelli, F. (1995) Predicting free energy contributions to the conformational stability of folded proteins from the residue sequence with radial basis function networks. Proc. Int. Conf. Intell. Syst. Mol. Biol., 3, 81-88.
-
(1995)
Proc. Int. Conf. Intell. Syst. Mol. Biol.
, vol.3
, pp. 81-88
-
-
Casadio, R.1
Compiani, M.2
Fariselli, P.3
Vivarelli, F.4
-
3
-
-
0037221599
-
Is there a unifying mechanism for protein folding?
-
Daggett, V. and Fersht, A.R. (2003) Is there a unifying mechanism for protein folding? Trends Biochem. Sci., 28, 18-25.
-
(2003)
Trends Biochem. Sci.
, vol.28
, pp. 18-25
-
-
Daggett, V.1
Fersht, A.R.2
-
4
-
-
0033047710
-
Neural network based predictor of residue contacts in proteins
-
Fariselli, P. and Casadio, R. (1999) Neural network based predictor of residue contacts in proteins. Protein Eng., 12, 15-21.
-
(1999)
Protein Eng.
, vol.12
, pp. 15-21
-
-
Fariselli, P.1
Casadio, R.2
-
5
-
-
0035037981
-
Are the parameters of various stabilization factors estimated from mutant human lysozymes compatible with other proteins?
-
Funahashi, J., Takano, K. and Yutani, K. (2001) Are the parameters of various stabilization factors estimated from mutant human lysozymes compatible with other proteins? Protein Eng., 14, 127-134.
-
(2001)
Protein Eng.
, vol.14
, pp. 127-134
-
-
Funahashi, J.1
Takano, K.2
Yutani, K.3
-
6
-
-
0030777760
-
Predicting protein stability changes upon mutation using database-derived potentials: Solvent accessibility determines the importance of local versus non-local interactions along the sequence
-
Gilis, D. and Rooman, M. (1997) Predicting protein stability changes upon mutation using database-derived potentials: solvent accessibility determines the importance of local versus non-local interactions along the sequence. J. Mol. Biol., 272, 276-290.
-
(1997)
J. Mol. Biol.
, vol.272
, pp. 276-290
-
-
Gilis, D.1
Rooman, M.2
-
7
-
-
0033976585
-
ProTherm, version 2.0: Thermodynamic database for proteins and mutants
-
Gromiha, M.M., An, J., Kono, H., Oobatake, M., Uedaira, H., Prabakaran, P. and Sarai, A. (2000) ProTherm, version 2.0: thermodynamic database for proteins and mutants. Nucleic Acids Res., 28, 283-285.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 283-285
-
-
Gromiha, M.M.1
An, J.2
Kono, H.3
Oobatake, M.4
Uedaira, H.5
Prabakaran, P.6
Sarai, A.7
-
8
-
-
0036291145
-
Predicting changes in the stability of proteins and protein complexes: A study of more than 1000 mutations
-
Guerois, R., Nielsen, J.E. and Serrano, L. (2002) Predicting changes in the stability of proteins and protein complexes: a study of more than 1000 mutations. J. Mol. Biol., 320, 369-387.
-
(2002)
J. Mol. Biol.
, vol.320
, pp. 369-387
-
-
Guerois, R.1
Nielsen, J.E.2
Serrano, L.3
-
9
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern of hydrogen-bonded and geometrical features
-
Kabsch, W. and Sander, C. (1983) Dictionary of protein secondary structure: pattern of hydrogen-bonded and geometrical features. Biopolymers, 22, 2577-2637.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
10
-
-
0036948069
-
PoPMuSiC, rationally designing point mutations in protein structures
-
Kwasigroch, J.M., Gilis, D., Dehouck, Y. and Rooman, M. (2002) PoPMuSiC, rationally designing point mutations in protein structures. Bioinformatics, 18, 1701-1702.
-
(2002)
Bioinformatics
, vol.18
, pp. 1701-1702
-
-
Kwasigroch, J.M.1
Gilis, D.2
Dehouck, Y.3
Rooman, M.4
-
11
-
-
0034669841
-
Exhaustive mutagenesis in silico: Multicoordinate free energy calculations on proteins and peptides
-
Pitera, J.W. and Kollman, P.A (2000) Exhaustive mutagenesis in silico: multicoordinate free energy calculations on proteins and peptides. Proteins, 41, 385-397.
-
(2000)
Proteins
, vol.41
, pp. 385-397
-
-
Pitera, J.W.1
Kollman, P.A.2
-
12
-
-
0036568293
-
Prediction of coordination number and relative solvent accessibility in proteins
-
Pollastri, G., Baldi, P., Fariselli, P. and Casadio, R. (2002) Prediction of coordination number and relative solvent accessibility in proteins. Proteins, 47, 142-153.
-
(2002)
Proteins
, vol.47
, pp. 142-153
-
-
Pollastri, G.1
Baldi, P.2
Fariselli, P.3
Casadio, R.4
-
13
-
-
0025787845
-
Contribution of the hydrophobic effect to protein stability: Analysis based on simulations of the Ile-96-Ala mutation in barnase
-
Prevost, M., Wodak, S.J., Tidor, B. and Karplus, M. (1991) Contribution of the hydrophobic effect to protein stability: analysis based on simulations of the Ile-96-Ala mutation in barnase. Proc. Natl Acad. Sci. USA, 88, 10880-10884.
-
(1991)
Proc. Natl Acad. Sci. USA
, vol.88
, pp. 10880-10884
-
-
Prevost, M.1
Wodak, S.J.2
Tidor, B.3
Karplus, M.4
-
14
-
-
0036838311
-
Distance-scaled, finite ideal-gas reference state improves structure-derived potentials of mean force for structure selection and stability prediction
-
Zhou, H. and Zhou, Y. (2002) Distance-scaled, finite ideal-gas reference state improves structure-derived potentials of mean force for structure selection and stability prediction. Protein Sci., 11, 2714-2726.
-
(2002)
Protein Sci.
, vol.11
, pp. 2714-2726
-
-
Zhou, H.1
Zhou, Y.2
-
15
-
-
0345827721
-
Quantifying the effect of burial of amino acid residues on protein stability
-
Zhou, H. and Zhou, Y. (2004) Quantifying the effect of burial of amino acid residues on protein stability. Proteins, 54, 315-322.
-
(2004)
Proteins
, vol.54
, pp. 315-322
-
-
Zhou, H.1
Zhou, Y.2
|