메뉴 건너뛰기




Volumn 439, Issue 2, 2011, Pages 341-348

Pathway analysis of NAD + metabolism

Author keywords

Elementary flux mode (EFM); NAD + salvage pathway; NAD + synthesis; Niacin; Preiss Handler pathway; Sirtuin

Indexed keywords

ADENOSINE TRIPHOSPHATE; NICOTINAMIDE ADENINE DINUCLEOTIDE; TRYPTOPHAN;

EID: 80053244653     PISSN: 02646021     EISSN: 14708728     Source Type: Journal    
DOI: 10.1042/BJ20110320     Document Type: Article
Times cited : (53)

References (53)
  • 1
    • 0034609791 scopus 로고    scopus 로고
    • The large-scale organization of metabolic networks
    • Jeong, H., Tombor, B., Albert, R., Oltvai, Z. N. and Barabasi, A. L. (2000) The large-scale organization of metabolic networks. Nature 407, 651-654
    • (2000) Nature , vol.407 , pp. 651-654
    • Jeong, H.1    Tombor, B.2    Albert, R.3    Oltvai, Z.N.4    Barabasi, A.L.5
  • 2
    • 75549090213 scopus 로고    scopus 로고
    • KEGG for representation and analysis of molecular networks involving diseases and drugs
    • Kanehisa, M., Goto, S., Furumichi, M., Tanabe, M. and Hirakawa, M. (2010) KEGG for representation and analysis of molecular networks involving diseases and drugs. Nucleic Acids Res. 38, D355-D360
    • (2010) Nucleic Acids Res. , vol.38
    • Kanehisa, M.1    Goto, S.2    Furumichi, M.3    Tanabe, M.4    Hirakawa, M.5
  • 3
    • 1542346420 scopus 로고    scopus 로고
    • The new life of a centenarian: Signalling functions of NAD(P)
    • DOI 10.1016/j.tibs.2004.01.007, PII S0968000404000246
    • Berger, F., Ramirez-Hernandez, M. H. and Ziegler, M. (2004) The new life of a centenarian: signalling functions of NAD(P). Trends Biochem. Sci. 29, 111-118 (Pubitemid 38314856)
    • (2004) Trends in Biochemical Sciences , vol.29 , Issue.3 , pp. 111-118
    • Berger, F.1    Ramirez-Hernandez, M.H.2    Ziegler, M.3
  • 5
    • 77952547233 scopus 로고    scopus 로고
    • Ten years of NAD-dependent SIR2 family deacetylases: Implications for metabolic diseases
    • Imai, S. and Guarente, L. (2010) Ten years of NAD-dependent SIR2 family deacetylases: implications for metabolic diseases. Trends Pharmacol. Sci. 31, 212-220
    • (2010) Trends Pharmacol. Sci. , vol.31 , pp. 212-220
    • Imai, S.1    Guarente, L.2
  • 7
    • 0033961770 scopus 로고    scopus 로고
    • Enzymatic functions and structures of CD38 and homologs
    • Lee, H. C. (2000) Enzymatic functions and structures of CD38 and homologs. Chem. Immunol. 75, 39-59
    • (2000) Chem. Immunol. , vol.75 , pp. 39-59
    • Lee, H.C.1
  • 8
    • 34848922987 scopus 로고    scopus 로고
    • New molecular mechanisms on the activation of TRPM2 channels by oxidative stress and ADP-ribose
    • Naziroglu, M. (2007) New molecular mechanisms on the activation of TRPM2 channels by oxidative stress and ADP-ribose. Neurochem. Res. 32, 1990-2001
    • (2007) Neurochem. Res. , vol.32 , pp. 1990-2001
    • Naziroglu, M.1
  • 9
    • 0028128083 scopus 로고
    • Cyclic ADP-ribose, the ADP-ribosyl cyclase pathway and calcium signalling
    • Galione, A. (1994) Cyclic ADP-ribose, the ADP-ribosyl cyclase pathway and calcium signalling. Mol. Cell. Endocrinol. 98, 125-131
    • (1994) Mol. Cell. Endocrinol. , vol.98 , pp. 125-131
    • Galione, A.1
  • 11
    • 70449212074 scopus 로고
    • Biosynthesis of diphosphopyridine nucleotide. I. Identification of intermediates
    • Preiss, J. and Handler, P. (1958) Biosynthesis of diphosphopyridine nucleotide. I. Identification of intermediates. J. Biol. Chem. 233, 488-492
    • (1958) J. Biol. Chem. , vol.233 , pp. 488-492
    • Preiss, J.1    Handler, P.2
  • 12
    • 70449213670 scopus 로고
    • Biosynthesis of diphosphopyridine nucleotide. II. Enzymatic aspects
    • Preiss, J. and Handler, P. (1958) Biosynthesis of diphosphopyridine nucleotide. II. Enzymatic aspects. J. Biol. Chem. 233, 493-500
    • (1958) J. Biol. Chem. , vol.233 , pp. 493-500
    • Preiss, J.1    Handler, P.2
  • 14
  • 15
    • 0019327297 scopus 로고
    • Physiology aspects of pyridine nucleotide regulation in mammals
    • Bernofsky, C. (1980) Physiology aspects of pyridine nucleotide regulation in mammals. Mol. Cell. Biochem. 33, 135-143
    • (1980) Mol. Cell. Biochem. , vol.33 , pp. 135-143
    • Bernofsky, C.1
  • 16
    • 2342550554 scopus 로고    scopus 로고
    • + in fungi and humans
    • DOI 10.1016/S0092-8674(04)00416-7, PII S0092867404004167
    • Bieganowski, P. and Brenner, C. (2004) Discoveries of nicotinamide riboside as a nutrient and conserved NRK genes establish a Preiss-Handler independent route to NAD+ in fungi and humans. Cell 117, 495-502 (Pubitemid 38610234)
    • (2004) Cell , vol.117 , Issue.4 , pp. 495-502
    • Bieganowski, P.1    Brenner, C.2
  • 17
    • 0034064689 scopus 로고    scopus 로고
    • A general definition of metabolic pathways useful for systematic organization and analysis of complex metabolic networks
    • DOI 10.1038/73786
    • Schuster, S., Fell, D. A. and Dandekar, T. (2000) A general definition of metabolic pathways useful for systematic organization and analysis of complex metabolic networks. Nat. Biotechnol. 18, 326-332 (Pubitemid 30159487)
    • (2000) Nature Biotechnology , vol.18 , Issue.3 , pp. 326-332
    • Schuster, S.1    Fell, D.A.2    Dandekar, T.3
  • 18
    • 0037079050 scopus 로고    scopus 로고
    • Metabolic network structure determines key aspects of functionality and regulation
    • DOI 10.1038/nature01166
    • Stelling, J., Klamt, S., Bettenbrock, K., Schuster, S. and Gilles, E. D. (2002) Metabolic network structure determines key aspects of functionality and regulation. Nature 420, 190-193 (Pubitemid 35340124)
    • (2002) Nature , vol.420 , Issue.6912 , pp. 190-193
    • Stelling, J.1    Klamt, S.2    Bettenbrock, K.3    Schuster, S.4    Gilles, E.D.5
  • 19
    • 58149154663 scopus 로고    scopus 로고
    • Elementary mode analysis: A useful metabolic pathway analysis tool for characterizing cellular metabolism
    • Trinh, C. T., Wlaschin, A. and Srienc, F. (2009) Elementary mode analysis: a useful metabolic pathway analysis tool for characterizing cellular metabolism. Appl. Microbiol. Biotechnol. 81, 813-826
    • (2009) Appl. Microbiol. Biotechnol. , vol.81 , pp. 813-826
    • Trinh, C.T.1    Wlaschin, A.2    Srienc, F.3
  • 20
    • 0036691976 scopus 로고    scopus 로고
    • Reaction routes in biochemical reaction systems: Algebraic properties, validated calculation procedure and example from nucleotide metabolism
    • DOI 10.1007/s002850200143
    • Schuster, S., Hilgetag, C., Woods, J. H. and Fell, D. A. (2002) Reaction routes in biochemical reaction systems: algebraic properties, validated calculation procedure and example from nucleotide metabolism. J. Math. Biol. 45, 153-181 (Pubitemid 44200164)
    • (2002) Journal of Mathematical Biology , vol.45 , Issue.2 , pp. 153-181
    • Schuster, S.1    Hilgetag, C.2    Woods, J.H.3    Fell, P.A.4
  • 21
    • 10644266747 scopus 로고    scopus 로고
    • Rubisco without the Calvin cycle improves the carbon efficiency of developing green seeds
    • DOI 10.1038/nature03145
    • Schwender, J., Goffman, F., Ohlrogge, J. B. and Shachar-Hill, Y. (2004) Rubisco without the Calvin cycle improves the carbon efficiency of developing green seeds. Nature 432, 779-782 (Pubitemid 39656300)
    • (2004) Nature , vol.432 , Issue.7018 , pp. 779-782
    • Schwender, J.1    Goffman, F.2    Ohlrogge, J.B.3    Shachar-Hill, Y.4
  • 22
    • 67650904950 scopus 로고    scopus 로고
    • Understanding the adaptive growth strategy of Lactobacillus plantarum by in silico optimisation
    • Teusink, B., Wiersma, A., Jacobs, L., Notebaart, R. A. and Smid, E. J. (2009) Understanding the adaptive growth strategy of Lactobacillus plantarum by in silico optimisation. PLoS Comput. Biol. 5, e1000410
    • (2009) PLoS Comput. Biol. , vol.5
    • Teusink, B.1    Wiersma, A.2    Jacobs, L.3    Notebaart, R.A.4    Smid, E.J.5
  • 23
    • 58049211936 scopus 로고    scopus 로고
    • Can sugars be produced from fatty acids? A test case for pathway analysis tools
    • De Figueiredo, L. F., Schuster, S., Kaleta, C. and Fell, D. A. (2009) Can sugars be produced from fatty acids? A test case for pathway analysis tools. Bioinformatics 25, 152-158
    • (2009) Bioinformatics , vol.25 , pp. 152-158
    • De Figueiredo, L.F.1    Schuster, S.2    Kaleta, C.3    Fell, D.A.4
  • 28
    • 0041876231 scopus 로고    scopus 로고
    • The reported human NADsyn2 is ammonia-dependent NAD synthetase from a pseudomonad
    • DOI 10.1074/jbc.M302276200
    • Bieganowski, P. and Brenner, C. (2003) The reported human NADsyn2 is ammonia-dependent NAD synthetase from a pseudomonad. J. Biol. Chem. 278, 33056-33059 (Pubitemid 37055751)
    • (2003) Journal of Biological Chemistry , vol.278 , Issue.35 , pp. 33056-33059
    • Bieganowski, P.1    Brenner, C.2
  • 29
    • 33846693322 scopus 로고    scopus 로고
    • The regulation of nicotinamide adenine dinucleotide biosynthesis by Nampt/PBEF/visfatin in mammals
    • DOI 10.1097/MOG.0b013e32801b3c8f, PII 0000157420070300000011
    • Revollo, J. R., Grimm, A. A. and Imai, S. (2007) The regulation of nicotinamide adenine dinucleotide biosynthesis by Nampt/PBEF/visfatin in mammals. Curr. Opin. Gastroenterol. 23, 164-170 (Pubitemid 46192971)
    • (2007) Current Opinion in Gastroenterology , vol.23 , Issue.2 , pp. 164-170
    • Revollo, J.R.1    Grimm, A.A.2    Imai, S.-I.3
  • 32
    • 0032821997 scopus 로고    scopus 로고
    • Energy coupling through molecular discrimination: Nicotinate phosphoribosyltransferase
    • DOI 10.1016/S0076-6879(99)08004-0
    • Grubmeyer, C. T., Gross, J. W. and Rajavel, M. (1999) Energy coupling through molecular discrimination: nicotinate phosphoribosyltransferase. Methods Enzymol. 308, 28-48 (Pubitemid 29418898)
    • (1999) Methods in Enzymology , vol.308 , pp. 28-48
    • Grubmeyer, C.T.1    Gross, J.W.2    Rajavel, M.3
  • 33
    • 54349088713 scopus 로고    scopus 로고
    • Weak coupling of ATP hydrolysis to the chemical equilibrium of human nicotinamide phosphoribosyltransferase
    • Burgos, E. S. and Schramm, V. L. (2008) Weak coupling of ATP hydrolysis to the chemical equilibrium of human nicotinamide phosphoribosyltransferase. Biochemistry 47, 11086-11096
    • (2008) Biochemistry , vol.47 , pp. 11086-11096
    • Burgos, E.S.1    Schramm, V.L.2
  • 34
    • 33747856186 scopus 로고    scopus 로고
    • Metatool 5.0: Fast and flexible elementary modes analysis
    • Von Kamp, A. and Schuster, S. (2006) Metatool 5.0: fast and flexible elementary modes analysis. Bioinformatics 22, 1930-1931
    • (2006) Bioinformatics , vol.22 , pp. 1930-1931
    • Von Kamp, A.1    Schuster, S.2
  • 36
    • 0036190727 scopus 로고    scopus 로고
    • Identification and functional analysis of the Saccharomyces cerevisiae nicotinamidase gene, PNCI
    • DOI 10.1002/yea.810
    • Ghislain, M., Talla, E. and François, J. M. (2002) Identification and functional analysis of the Saccharomyces cerevisiae nicotinamidase gene, PNC1. Yeast 19, 215-224 (Pubitemid 34189559)
    • (2002) Yeast , vol.19 , Issue.3 , pp. 215-224
    • Ghislain, M.1    Talla, E.2    Francois, J.M.3
  • 37
    • 0036856578 scopus 로고    scopus 로고
    • Pre-B-cell colony-enhancing factor, whose expression is up-regulated in activated lymphocytes, is a nicotinamide phosphoribosyltransferase, a cytosolic enzyme involved in NAF biosynthesis
    • DOI 10.1002/1521-4141(200211)32:11<3225::AID-IMMU3225>3.0.CO;2-L
    • Rongvaux, A., Shea, R. J., Mulks, M. H., Gigot, D., Urbain, J., Leo, O. and Andris, F. (2002) Pre-B-cell colony-enhancing factor, whose expression is up-regulated in activated lymphocytes, is a nicotinamide phosphoribosyltransferase, a cytosolic enzyme involved in NAD biosynthesis. Eur. J. Immunol. 32, 3225-3234 (Pubitemid 35414880)
    • (2002) European Journal of Immunology , vol.32 , Issue.11 , pp. 3225-3234
    • Rongvaux, A.1    She, R.J.2    Mulks, M.H.3    Gigot, D.4    Urbain, J.5    Leo, O.6    Andris, F.7
  • 38
    • 10944270187 scopus 로고    scopus 로고
    • The NAD biosynthesis pathway mediated by nicotinamide phosphoribosyltransferase regulates Sir2 activity in mammalian cells
    • DOI 10.1074/jbc.M408388200
    • Revollo, J. R., Grimm, A. A. and Imai, S. (2004) The NAD biosynthesis pathway mediated by nicotinamide phosphoribosyltransferase regulates Sir2 activity in mammalian cells. J. Biol. Chem. 279, 50754-50763 (Pubitemid 40017813)
    • (2004) Journal of Biological Chemistry , vol.279 , Issue.49 , pp. 50754-50763
    • Revollo, J.R.1    Grimm, A.A.2    Imai, S.-I.3
  • 39
    • 34247502715 scopus 로고    scopus 로고
    • +
    • DOI 10.1016/j.cell.2007.03.024, PII S009286740700390X
    • Belenky, P., Racette, F. G., Bogan, K. L., McClure, J. M., Smith, J. S. and Brenner, C. (2007) Nicotinamide riboside promotes Sir2 silencing and extends lifespan via Nrk and Urh1/Pnp1/Meu1 pathways to NAD+. Cell 129, 473-484 (Pubitemid 46660969)
    • (2007) Cell , vol.129 , Issue.3 , pp. 473-484
    • Belenky, P.1    Racette, F.G.2    Bogan, K.L.3    McClure, J.M.4    Smith, J.S.5    Brenner, C.6
  • 40
    • 27744501798 scopus 로고    scopus 로고
    • Subcellular compartmentation and differential catalytic properties of the three human nicotinamide mononucleotide adenylyltransferase isoforms
    • DOI 10.1074/jbc.M508660200
    • Berger, F., Lau, C., Dahlmann, M. and Ziegler, M. (2005) Subcellular compartmentation and differential catalytic properties of the three human nicotinamide mononucleotide adenylyltransferase isoforms. J. Biol. Chem. 280, 36334-36341 (Pubitemid 41633907)
    • (2005) Journal of Biological Chemistry , vol.280 , Issue.43 , pp. 36334-36341
    • Berger, F.1    Lau, C.2    Dahlmann, M.3    Ziegler, M.4
  • 41
    • 71749096624 scopus 로고    scopus 로고
    • Identification of Isn1 and Sdt1 as glucose- And vitamin-regulated nicotinamide mononucleotide and nicotinic acid mononucleotide 5′-nucleotidases responsible for production of nicotinamide riboside and nicotinic acid riboside
    • Bogan, K. L., Evans, C., Belenky, P., Song, P., Burant, C. F., Kennedy, R. and Brenner, C. (2009) Identification of Isn1 and Sdt1 as glucose- and vitamin-regulated nicotinamide mononucleotide and nicotinic acid mononucleotide 5′-nucleotidases responsible for production of nicotinamide riboside and nicotinic acid riboside. J. Biol. Chem. 284, 34861-34869
    • (2009) J. Biol. Chem. , vol.284 , pp. 34861-34869
    • Bogan, K.L.1    Evans, C.2    Belenky, P.3    Song, P.4    Burant, C.F.5    Kennedy, R.6    Brenner, C.7
  • 46
    • 70349636598 scopus 로고    scopus 로고
    • Can the whole be less than the sum of its parts? Pathway analysis in genome-scale metabolic networks using elementary flux patterns
    • Kaleta, C., De Figueiredo, L. F. and Schuster, S. (2009) Can the whole be less than the sum of its parts? Pathway analysis in genome-scale metabolic networks using elementary flux patterns. Genome Res. 19, 1872-1883
    • (2009) Genome Res. , vol.19 , pp. 1872-1883
    • Kaleta, C.1    De Figueiredo, L.F.2    Schuster, S.3
  • 47
    • 75849154006 scopus 로고    scopus 로고
    • In response to 'Can sugars be produced from fatty acids? A test case for pathway analysis tools'
    • Faust, K., Croes, D. and van Helden, J. (2009) In response to 'Can sugars be produced from fatty acids? A test case for pathway analysis tools'. Bioinformatics 25, 3202-3205
    • (2009) Bioinformatics , vol.25 , pp. 3202-3205
    • Faust, K.1    Croes, D.2    Van Helden, J.3
  • 48
    • 75849128878 scopus 로고    scopus 로고
    • Response to comment on 'Can sugars be produced from fatty acids? A test case for pathway analysis tools'
    • De Figueiredo, L. F., Schuster, S., Kaleta, C. and Fell, D. A. (2009) Response to comment on 'Can sugars be produced from fatty acids? A test case for pathway analysis tools'. Bioinformatics 25, 3330-3331
    • (2009) Bioinformatics , vol.25 , pp. 3330-3331
    • De Figueiredo, L.F.1    Schuster, S.2    Kaleta, C.3    Fell, D.A.4
  • 49
    • 33749140758 scopus 로고
    • Corn as an etiological factor in the production of a nicotinic acid deficiency in the rat
    • Krehl, W. A., Teply, L. J. and Elvehjem, C. A. (1945) Corn as an etiological factor in the production of a nicotinic acid deficiency in the rat. Science 101, 283
    • (1945) Science , vol.101 , pp. 283
    • Krehl, W.A.1    Teply, L.J.2    Elvehjem, C.A.3
  • 50
    • 34548329953 scopus 로고    scopus 로고
    • Elevation of cellular NAD levels by nicotinic acid and involvement of nicotinic acid phosphoribosyltransferase in human cells
    • DOI 10.1074/jbc.M610357200
    • Hara, N., Yamada, K., Shibata, T., Osago, H., Hashimoto, T. and Tsuchiya, M. (2007) Elevation of cellular NAD levels by nicotinic acid and involvement of nicotinic acid phosphoribosyltransferase in human cells. J. Biol. Chem. 282, 24574-24582 (Pubitemid 47347525)
    • (2007) Journal of Biological Chemistry , vol.282 , Issue.34 , pp. 24574-24582
    • Hara, N.1    Yamada, K.2    Shibata, T.3    Osago, H.4    Hashimoto, T.5    Tsuchiya, M.6
  • 51
    • 65249087389 scopus 로고    scopus 로고
    • SIRT5 deacetylates carbamoyl phosphate synthetase 1 and regulates the urea cycle
    • Nakagawa, T., Lomb, D. J., Haigis, M. C. and Guarente, L. (2009) SIRT5 deacetylates carbamoyl phosphate synthetase 1 and regulates the urea cycle. Cell 137, 560-570
    • (2009) Cell , vol.137 , pp. 560-570
    • Nakagawa, T.1    Lomb, D.J.2    Haigis, M.C.3    Guarente, L.4
  • 53
    • 67650550813 scopus 로고    scopus 로고
    • Assimilation of endogenous nicotinamide riboside is essential for calorie restriction-mediated life span extension in Saccharomyces cerevisiae
    • Lu, S. P., Kato, M. and Lin, S. J. (2009) Assimilation of endogenous nicotinamide riboside is essential for calorie restriction-mediated life span extension in Saccharomyces cerevisiae. J. Biol. Chem. 284, 17110-17119
    • (2009) J. Biol. Chem. , vol.284 , pp. 17110-17119
    • Lu, S.P.1    Kato, M.2    Lin, S.J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.