-
1
-
-
57049150206
-
Selection and optimization of microbial hosts for biofuels production
-
10.1016/j.ymben.2008.06.009
-
Selection and optimization of microbial hosts for biofuels production. Fischer CR, Klein-Marcuschamer D, Stephanopoulos G, Metabol Eng 2008 10 295 304 10.1016/j.ymben.2008.06.009
-
(2008)
Metabol Eng
, vol.10
, pp. 295-304
-
-
Fischer, C.R.1
Klein-Marcuschamer, D.2
Stephanopoulos, G.3
-
2
-
-
45049086849
-
Biofuel alternatives to ethanol: Pumping the microbial well
-
10.1016/j.tibtech.2008.03.008
-
Biofuel alternatives to ethanol: pumping the microbial well. Fortman JL, Chhabra S, Mukhopadhyay A, Chou H, Lee TS, Steen E, Keasling JD, Trends in Biotechnol 2008 26 375 381 10.1016/j.tibtech.2008.03.008
-
(2008)
Trends in Biotechnol
, vol.26
, pp. 375-381
-
-
Fortman, J.L.1
Chhabra, S.2
Mukhopadhyay, A.3
Chou, H.4
Lee, T.S.5
Steen, E.6
Keasling, J.D.7
-
3
-
-
57049098094
-
Metabolic engineering of microorganisms for biofuels production: From bugs to synthetic biology to fuels
-
10.1016/j.copbio.2008.10.014 18996194
-
Metabolic engineering of microorganisms for biofuels production: from bugs to synthetic biology to fuels. Lee SK, Chou H, Ham TS, Lee TS, Keasling JD, Curr Opin Biotechnol 2008 19 556 563 10.1016/j.copbio.2008.10.014 18996194
-
(2008)
Curr Opin Biotechnol
, vol.19
, pp. 556-563
-
-
Lee, S.K.1
Chou, H.2
Ham, T.S.3
Lee, T.S.4
Keasling, J.D.5
-
4
-
-
0032143971
-
Bacteria tolerant to organic solvents
-
DOI 10.1007/s007920050065
-
Bacteria tolerant to organic solvents. Isken S, de Bont JAM, Extremophiles 1998 2 229 238 10.1007/s007920050065 9783170 (Pubitemid 28408004)
-
(1998)
Extremophiles
, vol.2
, Issue.3
, pp. 229-238
-
-
Isken, S.1
De Bont, J.A.M.2
-
5
-
-
0036405482
-
Mechanisms of solvent tolerance in gram-negative bacteria
-
DOI 10.1146/annurev.micro.56.012302.161038
-
Mechanisms of solvent tolerance in Gram-negative bacteria. Ramos JL, Duque E, Gallegos M-T, Godoy P, Ramos-Gonzalez MI, Rojas A, Teran W, Segura A, Annu Rev Microbiol 2002 56 743 768 10.1146/annurev.micro.56.012302.161038 12142492 (Pubitemid 35217473)
-
(2002)
Annual Review of Microbiology
, vol.56
, pp. 743-768
-
-
Ramos, J.L.1
Duque, E.2
Gallegos, M.-T.3
Godoy, P.4
Ramos-Gonzalez, M.I.5
Rojas, A.6
Teran, W.7
Segura, A.8
-
6
-
-
33845442201
-
Engineering yeast transcription machinery for improved ethanol tolerance and production
-
DOI 10.1126/science.1131969
-
Engineering yeast transcription machinery for improved ethanol tolerance and production. Alper H, Moxley J, Nevoigt E, Fink GR, Stephanopoulos G, Science 2006 314 1565 1568 10.1126/science.1131969 17158319 (Pubitemid 44907143)
-
(2006)
Science
, vol.314
, Issue.5805
, pp. 1565-1568
-
-
Alper, H.1
Moxley, J.2
Nevoigt, E.3
Fink, G.R.4
Stephanopoulos, G.5
-
7
-
-
79955806186
-
Engineering microbial biofuel tolerance and export using efflux pumps
-
21556065
-
Engineering microbial biofuel tolerance and export using efflux pumps. Dunlop MJ, Dossani ZY, Szmidt HL, Chu HC, Lee TS, Keasling JD, Hadi M, Mukhopadhyay A, Mol Syst Biol 2011 7 487 21556065
-
(2011)
Mol Syst Biol
, vol.7
, pp. 487
-
-
Dunlop, M.J.1
Dossani, Z.Y.2
Szmidt, H.L.3
Chu, H.C.4
Lee, T.S.5
Keasling, J.D.6
Hadi, M.7
Mukhopadhyay, A.8
-
8
-
-
0041527249
-
Overexpression of groESL in Clostridium acetobutylicum results in increased solvent production and tolerance, prolonged metabolism, and changes in the cell's transcriptional program
-
DOI 10.1128/AEM.69.8.4951-4965.2003
-
Overexpression of groESL in Clostridium acetobutylicum results in increased solvent production and tolerance, prolonged metabolism, and changes in the cell's transcriptional program. Tomas C, Welker N, Papoutsakis E, Appl Environ Microbiol 2003 69 4951 4965 10.1128/AEM.69.8.4951-4965.2003 12902291 (Pubitemid 36992961)
-
(2003)
Applied and Environmental Microbiology
, vol.69
, Issue.8
, pp. 4951-4965
-
-
Tomas, C.A.1
Welker, N.E.2
Papoutsakis, E.T.3
-
9
-
-
78650647970
-
Evolution, genomic analysis, and reconstruction of isobutanol tolerance in Escherichia coli
-
21179021
-
Evolution, genomic analysis, and reconstruction of isobutanol tolerance in Escherichia coli. Atsumi S, Wu T-Y, Machado IMP, Huang W-C, Chen P-Y, Pellegrini M, Liao JC, Mol Syst Biol 2010 6 449 21179021
-
(2010)
Mol Syst Biol
, vol.6
, pp. 449
-
-
Atsumi, S.1
Wu, T.-Y.2
MacHado, I.M.P.3
Huang, W.-C.4
Chen, P.-Y.5
Pellegrini, M.6
Liao, J.C.7
-
10
-
-
0001441208
-
Effect of butanol challenge and temperature on lipid composition and membrane fluidity of butanol tolerant Clostridium acetobutylicum
-
16347502
-
Effect of butanol challenge and temperature on lipid composition and membrane fluidity of butanol tolerant Clostridium acetobutylicum. Baer S, Blaschek H, Smith T, Appl Environ Microbiol 1987 53 2854 2861 16347502
-
(1987)
Appl Environ Microbiol
, vol.53
, pp. 2854-2861
-
-
Baer, S.1
Blaschek, H.2
Smith, T.3
-
11
-
-
0037545467
-
Expression of a cloned cyclopropane fatty acid synthase gene reduces solvent formation in Clostridium acetobutylicum ATCC 824
-
DOI 10.1128/AEM.69.5.2831-2841.2003
-
Expression of a cloned cyclopropane fatty acid synthase gene reduces solvent formation in Clostridium acetobutylicum ATCC 824. Zhao Y, Hindorff L, Chuang A, Monroe-Augustus M, Lyristis M, Harrison M, Rudolph F, Bennett G, Appl Environ Microbiol 2003 69 2831 2841 10.1128/AEM.69.5.2831-2841.2003 12732555 (Pubitemid 36560363)
-
(2003)
Applied and Environmental Microbiology
, vol.69
, Issue.5
, pp. 2831-2841
-
-
Zhao, Y.1
Hindorff, L.A.2
Chuang, A.3
Monroe-Augustus, M.4
Lyristis, M.5
Harrison, M.L.6
Rudolph, F.B.7
Bennett, G.N.8
-
12
-
-
77953022341
-
A comparative view of metabolite and substrate stress and tolerance in microbial bioprocessing: From biofuels and chemicals, to biocatalysis and bioremediation
-
10.1016/j.ymben.2010.03.004
-
A comparative view of metabolite and substrate stress and tolerance in microbial bioprocessing: from biofuels and chemicals, to biocatalysis and bioremediation. Nicolaou SA, Gaida SM, Papoutsakis ET, Metabol Eng 2010 12 307 331 10.1016/j.ymben.2010.03.004
-
(2010)
Metabol Eng
, vol.12
, pp. 307-331
-
-
Nicolaou, S.A.1
Gaida, S.M.2
Papoutsakis, E.T.3
-
13
-
-
0029048826
-
Mechanisms of membrane toxicity of hydrocarbons
-
7603409
-
Mechanisms of membrane toxicity of hydrocarbons. Sikkema J, de Bont JAM, Poolman B, Microbiol Rev 1995 59 201 222 7603409
-
(1995)
Microbiol Rev
, vol.59
, pp. 201-222
-
-
Sikkema, J.1
De Bont, J.A.M.2
Poolman, B.3
-
16
-
-
75749125061
-
Microbial production of fatty-acid-derived fuels and chemicals from plant biomass
-
10.1038/nature08721 20111002
-
Microbial production of fatty-acid-derived fuels and chemicals from plant biomass. Steen EJ, Kang YS, Bokinsky G, Hu ZH, Schirmer A, McClure A, del Cardayre SB, Keasling JD, Nature 2010 463 559 562 10.1038/nature08721 20111002
-
(2010)
Nature
, vol.463
, pp. 559-562
-
-
Steen, E.J.1
Kang, Y.S.2
Bokinsky, G.3
Hu, Z.H.4
Schirmer, A.5
McClure, A.6
Del Cardayre, S.B.7
Keasling, J.D.8
-
17
-
-
67649622058
-
Selected Pseudomonas putida strains able to grow in the presence of high butanol concentrations
-
10.1128/AEM.00225-09 19411419
-
Selected Pseudomonas putida strains able to grow in the presence of high butanol concentrations. Rühl J, Schmid A, Blank LM, Appl Environ Microbiol 2009 75 4653 4656 10.1128/AEM.00225-09 19411419
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 4653-4656
-
-
Rühl, J.1
Schmid, A.2
Blank, L.M.3
-
18
-
-
64649096369
-
Mechanisms of RND multidrug efflux pumps
-
19026770
-
Mechanisms of RND multidrug efflux pumps. Nikaido H, Takatsuka Y, Biochim Biophys Acta 2009 1794 769 781 19026770
-
(2009)
Biochim Biophys Acta
, vol.1794
, pp. 769-781
-
-
Nikaido, H.1
Takatsuka, Y.2
-
20
-
-
0034445202
-
Molecular properties of bacterial multidrug transporters
-
DOI 10.1128/MMBR.64.4.672-693.2000
-
Molecular properties of bacterial multidrug transporters. Putman M, van Veen HW, Konings WN, Microbiol Mol Biol Rev 2000 64 672 693 10.1128/MMBR.64.4. 672-693.2000 11104814 (Pubitemid 32475926)
-
(2000)
Microbiology and Molecular Biology Reviews
, vol.64
, Issue.4
, pp. 672-693
-
-
Putman, M.1
Van Veen, H.W.2
Konings, W.N.3
-
21
-
-
0031972688
-
Identification and molecular characterization of an efflux pump involved in Pseudomonas putida S12 solvent tolerance
-
DOI 10.1074/jbc.273.1.85
-
Identification and molecular characterization of an efflux pump involved in Pseudomonas putida S12 solvent tolerance. Kieboom J, Dennis JJ, de Bont JAM, Zylstra GJ, J Biol Chem 1998 273 85 91 10.1074/jbc.273.1.85 9417051 (Pubitemid 28042180)
-
(1998)
Journal of Biological Chemistry
, vol.273
, Issue.1
, pp. 85-91
-
-
Kieboom, J.1
Dennis, J.J.2
De Bont, J.A.M.3
Zylstra, G.J.4
-
22
-
-
0034976599
-
Three efflux pumps are required to provide efficient tolerance to toluene in Pseudomonas putida DOT-T1E
-
DOI 10.1128/JB.183.13.3967-3973.2001
-
Three efflux pumps are required to provide efficient tolerance to toluene in Pseudomonas putida DOT-T1E. Rojas A, Duque E, Mosqueda G, Golden G, Hurtado A, Ramos JL, Segura A, J Bacteriol 2001 183 3967 3973 10.1128/JB.183.13.3967- 3973.2001 11395460 (Pubitemid 32565476)
-
(2001)
Journal of Bacteriology
, vol.183
, Issue.13
, pp. 3967-3973
-
-
Rojas, A.1
Duque, E.2
Mosqueda, G.3
Golden, G.4
Hurtado, A.5
Ramos, J.L.6
Segura, A.7
-
23
-
-
77951074736
-
Mechanism of recognition of compounds of diverse structures by the multidrug efflux pump AcrB of Escherichia coli
-
10.1073/pnas.1001460107 20212112
-
Mechanism of recognition of compounds of diverse structures by the multidrug efflux pump AcrB of Escherichia coli. Takatsuka Y, Chen C, Nikaido H, Proc Natl Acad Sci USA 2010 107 6559 6565 10.1073/pnas.1001460107 20212112
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 6559-6565
-
-
Takatsuka, Y.1
Chen, C.2
Nikaido, H.3
-
24
-
-
0032455186
-
Role of the multidrug efflux systems of Pseudomonas aeruginosa in organic solvent tolerance
-
Role of the multidrug efflux systems of Pseudomonas aeruginosa in organic solvent tolerance. Li XZ, Zhang L, Poole K, J Bacteriol 1998 180 2987 2991 9603892 (Pubitemid 29122130)
-
(1998)
Journal of Bacteriology
, vol.180
, Issue.11
, pp. 2987-2991
-
-
Li, X.-Z.1
Zhang, L.2
Poole, K.3
-
25
-
-
0032439467
-
Active efflux of organic solvents by Pseudomonas putida S12 is induced by solvents
-
Active efflux of organic solvents by Pseudomonas putida S12 is induced by solvents. Kieboom J, Dennis JJ, Zylstra GJ, de Bont JAM, J Bacteriol 1998 180 6769 6772 9852029 (Pubitemid 29006099)
-
(1998)
Journal of Bacteriology
, vol.180
, Issue.24
, pp. 6769-6772
-
-
Kieboom, J.1
Dennis, J.J.2
Zylstra, G.J.3
De Bont, J.A.M.4
-
26
-
-
0030023489
-
The local repressor AcrR plays a modulating role in the regulation of acrAB genes of Escherichia coli by global stress signals
-
The local repressor AcrR plays a modulating role in the regulation of acrAB genes of Escherichia coli by global stress signals. Ma D, Alberti M, Lynch C, Nikaido H, Hearst J, Mol Microbiol 1996 19 101 112 10.1046/j.1365-2958.1996. 357881.x 8821940 (Pubitemid 26025873)
-
(1996)
Molecular Microbiology
, vol.19
, Issue.1
, pp. 101-112
-
-
Ma, D.1
Alberti, M.2
Lynch, C.3
Nikaido, H.4
Hearst, J.E.5
-
27
-
-
77749245785
-
Functional genomic study of exogenous n-butanol stress in Escherichia coli
-
10.1128/AEM.02323-09 20118358
-
Functional genomic study of exogenous n-butanol stress in Escherichia coli. Rutherford BJ, Dahl RH, Price RE, Szmidt HL, Benke PI, Mukhopadhyay A, Keasling JD, Appl Environ Microbiol 2010 76 1935 1945 10.1128/AEM.02323-09 20118358
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 1935-1945
-
-
Rutherford, B.J.1
Dahl, R.H.2
Price, R.E.3
Szmidt, H.L.4
Benke, P.I.5
Mukhopadhyay, A.6
Keasling, J.D.7
-
28
-
-
77951923689
-
Escherichia coli mar and acrAB mutants display no tolerance to simple alcohols
-
10.3390/ijms11041403 20480026
-
Escherichia coli mar and acrAB mutants display no tolerance to simple alcohols. Ankarloo J, Wikman S, Nicholls IA, Int J Mol Sci 2010 11 1403 1412 10.3390/ijms11041403 20480026
-
(2010)
Int J Mol Sci
, vol.11
, pp. 1403-1412
-
-
Ankarloo, J.1
Wikman, S.2
Nicholls, I.A.3
-
29
-
-
79953069562
-
Evolution combined with genomic study elucidates genetic bases of isobutanol tolerance in Escherichia coli
-
10.1186/1475-2859-10-18 21435272
-
Evolution combined with genomic study elucidates genetic bases of isobutanol tolerance in Escherichia coli. Minty JJ, Lesnefsky AA, Lin F, Chen Y, Zaroff TA, Veloso AB, Xie B, McConnell CA, Ward RJ, Schwartz DR, Rouillard JM, Gao Y, Gulari E, Lin XN, Microb Cell Fact 2011 10 18 10.1186/1475-2859-10-18 21435272
-
(2011)
Microb Cell Fact
, vol.10
, pp. 18
-
-
Minty, J.J.1
Lesnefsky, A.A.2
Lin, F.3
Chen, Y.4
Zaroff, T.A.5
Veloso, A.B.6
Xie, B.7
McConnell, C.A.8
Ward, R.J.9
Schwartz, D.R.10
Rouillard, J.M.11
Gao, Y.12
Gulari, E.13
Lin, X.N.14
-
30
-
-
34848823739
-
Consequences of membrane protein overexpression in Escherichia coli
-
DOI 10.1074/mcp.M600431-MCP200
-
Consequences of membrane protein overexpression in Escherichia coli. Wagner S, Baars L, Ytterberg AJ, Klussmeier A, Wagner CS, Nord O, Nygren PA, van Wijk KJ, de Gier JW, Mol Cell Proteomics 2007 6 1527 1550 10.1074/mcp.M600431- MCP200 17446557 (Pubitemid 47506165)
-
(2007)
Molecular and Cellular Proteomics
, vol.6
, Issue.9
, pp. 1527-1550
-
-
Wagner, S.1
Baarst, L.2
Ytterberg, A.J.3
Klussmerer, A.4
Wagner, C.S.5
Nord, O.6
Nygren, P.-A.7
Van Wijks, K.J.8
De Gier, J.-W.9
-
31
-
-
77955852574
-
A model for improving microbial biofuel production using a synthetic feedback loop
-
10.1007/s11693-010-9052-5 20805930
-
A model for improving microbial biofuel production using a synthetic feedback loop. Dunlop MJ, Keasling JD, Mukhopadhyay A, Syst Synth Biol 2010 4 95 104 10.1007/s11693-010-9052-5 20805930
-
(2010)
Syst Synth Biol
, vol.4
, pp. 95-104
-
-
Dunlop, M.J.1
Keasling, J.D.2
Mukhopadhyay, A.3
-
32
-
-
0028867333
-
The heat-shock and ethanol stress responses of yeast exhibit extensive similarity and functional overlap
-
10.1111/j.1574-6968.1995.tb07925.x 8586257
-
The heat-shock and ethanol stress responses of yeast exhibit extensive similarity and functional overlap. Piper P, FEMS Microbiol Lett 1995 134 121 127 10.1111/j.1574-6968.1995.tb07925.x 8586257
-
(1995)
FEMS Microbiol Lett
, vol.134
, pp. 121-127
-
-
Piper, P.1
-
33
-
-
67650685558
-
An integrated network approach identifies the isobutanol response network of Escherichia coli
-
19536200
-
An integrated network approach identifies the isobutanol response network of Escherichia coli. Brynildsen MP, Liao JC, Mol Syst Biol 2009 5 277 19536200
-
(2009)
Mol Syst Biol
, vol.5
, pp. 277
-
-
Brynildsen, M.P.1
Liao, J.C.2
-
34
-
-
1642396325
-
Transcriptional Analysis of Butanol Stress and Tolerance in Clostridium acetobutylicum
-
DOI 10.1128/JB.186.7.2006-2018.2004
-
Transcriptional analysis of butanol stress and tolerance in Clostridium acetobutylicum. Tomas C, Beamish J, Papoutsakis E, J Bacteriol 2004 186 2006 2018 10.1128/JB.186.7.2006-2018.2004 15028684 (Pubitemid 38381188)
-
(2004)
Journal of Bacteriology
, vol.186
, Issue.7
, pp. 2006-2018
-
-
Tomas, C.A.1
Beamish, J.2
Papoutsakis, E.T.3
-
35
-
-
77950629484
-
Metabolite stress and tolerance in the production of biofuels and chemicals: Gene-expression-based systems analysis of butanol, butyrate, and acetate stresses in the anaerobe Clostridium acetobutylicum
-
19998280
-
Metabolite stress and tolerance in the production of biofuels and chemicals: gene-expression-based systems analysis of butanol, butyrate, and acetate stresses in the anaerobe Clostridium acetobutylicum. Alsaker KV, Paredes C, Papoutsakis ET, Biotechnol Bioeng 2010 105 1131 1147 19998280
-
(2010)
Biotechnol Bioeng
, vol.105
, pp. 1131-1147
-
-
Alsaker, K.V.1
Paredes, C.2
Papoutsakis, E.T.3
-
36
-
-
36348946895
-
Improved adaptation to heat, cold, and solvent tolerance in Lactobacillus plantarum
-
DOI 10.1007/s00253-007-1228-x
-
Improved adaptation to heat, cold, and solvent tolerance in Lactobacillus plantarum. Fiocco D, Capozzi V, Goffin P, Hols P, Spano G, Appl Microbiol Biotechnol 2007 77 909 915 10.1007/s00253-007-1228-x 17960374 (Pubitemid 350159875)
-
(2007)
Applied Microbiology and Biotechnology
, vol.77
, Issue.4
, pp. 909-915
-
-
Fiocco, D.1
Capozzi, V.2
Goffin, P.3
Hols, P.4
Spano, G.5
-
37
-
-
79952432805
-
Genomic library screens for genes involved in n-butanol tolerance in Escherichia coli
-
10.1371/journal.pone.0017678 21408113
-
Genomic library screens for genes involved in n-butanol tolerance in Escherichia coli. Reyes LH, Almario MP, Kao KC, PLoS One 2011 6 17678 10.1371/journal.pone.0017678 21408113
-
(2011)
PLoS One
, vol.6
, pp. 517678
-
-
Reyes, L.H.1
Almario, M.P.2
Kao, K.C.3
-
38
-
-
0030712853
-
Cis-trans isomerization of unsaturated fatty acids: Cloning and sequencing of the cti gene from Pseudomonas putida P8
-
cis-trans isomerization of unsaturated fatty acids: cloning and sequencing of the cti gene from Pseudomonas putida P8. Holtwick R, Meinhardt F, Keweloh H, Appl Environ Microb 1997 63 4292 4297 (Pubitemid 27485753)
-
(1997)
Applied and Environmental Microbiology
, vol.63
, Issue.11
, pp. 4292-4297
-
-
Holtwick, R.1
Meinhardt, F.2
Keweloh, H.3
-
39
-
-
0032882545
-
Involvement of the cis/trans isomerase Cti in solvent resistance of Pseudomonas putida DOT-T1E
-
Involvement of the cis/trans isomerase Cti in solvent resistance of Pseudomonas putida DOT-T1E. Junker F, Ramos J, J Bacteriol 1999 181 5693 5700 10482510 (Pubitemid 29437140)
-
(1999)
Journal of Bacteriology
, vol.181
, Issue.18
, pp. 5693-5700
-
-
Junker, F.1
Ramos, J.L.2
-
40
-
-
8744273998
-
Psychrophilic Pseudomonas syringae requires trans-monounsaturated fatty acid for growth at higher temperature
-
DOI 10.1007/s00792-004-0401-8
-
Psychrophilic Pseudomonas syringae requires trans-monounsaturated fatty acid for growth at higher temperature. Kiran M, Prakash J, Annapoorni S, Dube S, Kusano T, Okuyama H, Murata N, Shivaji S, Extremophiles 2004 8 401 410 10.1007/s00792-004-0401-8 15241658 (Pubitemid 39520728)
-
(2004)
Extremophiles
, vol.8
, Issue.5
, pp. 401-410
-
-
Kiran, M.D.1
Prakash, J.S.S.2
Annapoorni, S.3
Dube, S.4
Kusano, T.5
Okuyama, H.6
Murata, N.7
Shivaji, S.8
-
41
-
-
34248196414
-
Dynamics of genomic-library enrichment and identification of solvent tolerance genes for Clostridium acetobutylicum
-
DOI 10.1128/AEM.02296-06
-
Dynamics of genomic-library enrichment and identification of solvent tolerance genes for Clostridium acetobutylicum. Borden JR, Papoutsakis ET, Appl Environ Microb 2007 73 3061 3068 10.1128/AEM.02296-06 (Pubitemid 46718591)
-
(2007)
Applied and Environmental Microbiology
, vol.73
, Issue.9
, pp. 3061-3068
-
-
Borden, J.R.1
Papoutsakis, E.T.2
-
42
-
-
71849110893
-
Next-generation synthetic gene networks
-
10.1038/nbt.1591 20010597
-
Next-generation synthetic gene networks. Lu TK, Khalil AS, Collins JJ, Nat Biotechnol 2009 27 1139 1150 10.1038/nbt.1591 20010597
-
(2009)
Nat Biotechnol
, vol.27
, pp. 1139-1150
-
-
Lu, T.K.1
Khalil, A.S.2
Collins, J.J.3
-
43
-
-
0034024497
-
Improving lycopene production in Escherichia coli by engineering metabolic control
-
DOI 10.1038/75398
-
Improving lycopene production in Escherichia coli by engineering metabolic control. Farmer WR, Liao JC, Nat Biotechnol 2000 18 533 537 10.1038/75398 10802621 (Pubitemid 30313958)
-
(2000)
Nature Biotechnology
, vol.18
, Issue.5
, pp. 533-537
-
-
Farmer, W.R.1
Liao, J.C.2
-
44
-
-
0033797405
-
Improvement of microbial strains and fermentation processes
-
10.1007/s002530000403 11030563
-
Improvement of microbial strains and fermentation processes. Parekh S, Vinci VA, Strobel RJ, Appl Microbiol Biotechnol 2000 54 287 301 10.1007/s002530000403 11030563
-
(2000)
Appl Microbiol Biotechnol
, vol.54
, pp. 287-301
-
-
Parekh, S.1
Vinci, V.A.2
Strobel, R.J.3
-
45
-
-
0035989644
-
Genome shuffling of Lactobacillus for improved acid tolerance
-
DOI 10.1038/nbt0702-707
-
Genome shuffling of Lactobacillus for improved acid tolerance. Patnaik R, Louie S, Gavrilovic V, Perry K, Stemmer W, Ryan C, del Cardayre S, Nat Biotechnol 2002 20 707 712 10.1038/nbt0702-707 12089556 (Pubitemid 34741984)
-
(2002)
Nature Biotechnology
, vol.20
, Issue.7
, pp. 707-712
-
-
Patnaik, R.1
Louie, S.2
Gavrilovic, V.3
Perry, K.4
Stemmer, W.P.C.5
Ryan, C.M.6
Del Cardayre, S.7
-
46
-
-
38949178112
-
Engineering complex phenotypes in industrial strains
-
DOI 10.1021/bp0701214
-
Engineering complex phenotypes in industrial strains. Patnaik R, Biotechnol Progr 2008 24 38 47 10.1021/bp0701214 (Pubitemid 351231248)
-
(2008)
Biotechnology Progress
, vol.24
, Issue.1
, pp. 38-47
-
-
Patnaik, R.1
-
47
-
-
68949161807
-
Programming cells by multiplex genome engineering and accelerated evolution
-
10.1038/nature08187 19633652
-
Programming cells by multiplex genome engineering and accelerated evolution. Wang HH, Isaacs FJ, Carr PA, Sun ZZ, Xu G, Forest CR, Church GM, Nature 2009 460 894 U133 10.1038/nature08187 19633652
-
(2009)
Nature
, vol.460
-
-
Wang, H.H.1
Isaacs, F.J.2
Carr, P.A.3
Sun, Z.Z.4
Xu, G.5
Forest, C.R.6
Church, G.M.7
-
48
-
-
66749161542
-
Genomics enabled approaches in strain engineering
-
10.1016/j.mib.2009.04.005 19467921
-
Genomics enabled approaches in strain engineering. Warner JR, Patnaik R, Gill RT, Curr Opin Microbiol 2009 12 223 230 10.1016/j.mib.2009.04.005 19467921
-
(2009)
Curr Opin Microbiol
, vol.12
, pp. 223-230
-
-
Warner, J.R.1
Patnaik, R.2
Gill, R.T.3
-
49
-
-
77955459156
-
Rapid profiling of a microbial genome using mixtures of barcoded oligonucleotides
-
10.1038/nbt.1653 20639866
-
Rapid profiling of a microbial genome using mixtures of barcoded oligonucleotides. Warner JR, Reeder PJ, Karimpour-Fard A, Woodruff LBA, Gill RT, Nat Biotechnol 2010 28 856 862 10.1038/nbt.1653 20639866
-
(2010)
Nat Biotechnol
, vol.28
, pp. 856-862
-
-
Warner, J.R.1
Reeder, P.J.2
Karimpour-Fard, A.3
Woodruff, L.B.A.4
Gill, R.T.5
-
50
-
-
2942602045
-
Comparative genomic analysis of solvent extrusion pumps in Pseudomonas strains exhibiting different degrees of solvent tolerance
-
DOI 10.1007/s00792-003-0331-x
-
Comparative genomic analysis of solvent extrusion pumps in Pseudomonas strains exhibiting different degrees of solvent tolerance. Segura A, Rojas A, Hurtado A, Huertas MJ, Ramos JL, Extremophiles 2003 7 371 376 10.1007/s00792-003-0331-x 12743835 (Pubitemid 41512715)
-
(2003)
Extremophiles
, vol.7
, Issue.5
, pp. 371-376
-
-
Segura, A.1
Rojas, A.2
Hurtado, A.3
Huertas, M.-J.4
Ramos, J.L.5
-
51
-
-
0032912002
-
Isolation and characterization of the cis-trans-unsaturated fatty acid isomerase of pseudomonas oleovorans gpo12
-
Isolation and characterization of the cis-trans-unsaturated fatty acid isomerase of Pseudomonas oleovorans GPo12. Pedrotta V, Witholt B, J Bacteriol 1999 181 3256 3261 10322030 (Pubitemid 29236934)
-
(1999)
Journal of Bacteriology
, vol.181
, Issue.10
, pp. 3256-3261
-
-
Pedrotta, V.1
Witholt, B.2
-
52
-
-
33747043510
-
Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis
-
DOI 10.1038/nbt1232, PII NBT1232
-
Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis. Schneiker S, Martins dos Santos VA, Bartels D, Bekel T, Brecht M, Buhrmester J, Chernikova TN, Denaro R, Ferrer M, Gertler C, Goesmann A, Golyshina OV, Kaminski F, Khachane AN, Lang S, Linke B, McHardy AC, Meyer F, Nechitaylo T, Pühler A, Regenhardt D, Rupp O, Sabirova JS, Selbitschka W, Yakimov MM, Timmis KN, Vorhölter FJ, Weidner S, Kaiser O, Golyshin PN, Nat Biotechnol 2006 24 997 1004 10.1038/nbt1232 16878126 (Pubitemid 44215394)
-
(2006)
Nature Biotechnology
, vol.24
, Issue.8
, pp. 997-1004
-
-
Schneiker, S.1
Dos Santos, V.A.P.M.2
Bartels, D.3
Bekel, T.4
Brecht, M.5
Buhrmester, J.6
Chernikova, T.N.7
Denaro, R.8
Ferrer, M.9
Gertler, C.10
Goesmann, A.11
Golyshina, O.V.12
Kaminski, F.13
Khachane, A.N.14
Lang, S.15
Linke, B.16
McHardy, A.C.17
Meyer, F.18
Nechitaylo, T.19
Puhler, A.20
Regenhardt, D.21
Rupp, O.22
Sabirova, J.S.23
Selbitschka, W.24
Yakimov, M.M.25
Timmis, K.N.26
Vorholter, F.-J.27
Weidner, S.28
Kaiser, O.29
Golyshin, P.N.30
more..
-
53
-
-
0037357728
-
Gene array-based identification of changes that contribute to ethanol tolerance in ethanologenic Escherichia coli: Comparison of KO11 (parent) to LY01 (resistant mutant)
-
DOI 10.1021/bp025658q
-
Gene array-based identification of changes that contribute to ethanol tolerance in ethanologenic Escherichia coli: comparison of KO11 (parent) to LY01 (resistant mutant). Gonzalez R, Tao H, Purvis JE, York SW, Shanmugam KT, Ingram LO, Biotechnol Progr 2003 19 612 623 10.1021/bp025658q (Pubitemid 36421015)
-
(2003)
Biotechnology Progress
, vol.19
, Issue.2
, pp. 612-623
-
-
Gonzalez, R.1
Tao, H.2
Purvis, J.E.3
York, S.W.4
Shanmugam, K.T.5
Ingram, L.O.6
-
54
-
-
77953237121
-
Regulatory and metabolic rewiring during laboratory evolution of ethanol tolerance in E. coli
-
20531407
-
Regulatory and metabolic rewiring during laboratory evolution of ethanol tolerance in E. coli. Goodarzi H, Bennett BD, Amini S, Reaves ML, Hottes AK, Rabinowitz JD, Tavazoie S, Mol Syst Biol 2010 6 378 20531407
-
(2010)
Mol Syst Biol
, vol.6
, pp. 378
-
-
Goodarzi, H.1
Bennett, B.D.2
Amini, S.3
Reaves, M.L.4
Hottes, A.K.5
Rabinowitz, J.D.6
Tavazoie, S.7
-
55
-
-
76749172275
-
Achievements and perspectives to overcome the poor solvent resistance in acetone and butanol-producing microorganisms
-
10.1007/s00253-009-2390-0 20033401
-
Achievements and perspectives to overcome the poor solvent resistance in acetone and butanol-producing microorganisms. Ezeji T, Milne C, Price ND, Blaschek HP, Appl Microbiol Biotechnol 2010 85 1697 1712 10.1007/s00253-009- 2390-0 20033401
-
(2010)
Appl Microbiol Biotechnol
, vol.85
, pp. 1697-1712
-
-
Ezeji, T.1
Milne, C.2
Price, N.D.3
Blaschek, H.P.4
-
56
-
-
79955804234
-
Sustainable production of industrial chemicals from sugars
-
Sustainable production of industrial chemicals from sugars. Burk MJ, Int Sugar J 2010 112 30 35
-
(2010)
Int Sugar J
, vol.112
, pp. 30-35
-
-
Burk, M.J.1
-
57
-
-
0036360494
-
Bulk chemicals from biotechnology: The case of 1,3-propanediol production and the new trends
-
Bulk chemicals from biotechnology: the case of 1,3-propanediol production and the new trends. Zeng A, Biebl H, Adv Biochem Eng Biotechnol 2010 74 239 258
-
(2010)
Adv Biochem Eng Biotechnol
, vol.74
, pp. 239-258
-
-
Zeng, A.1
Biebl, H.2
-
58
-
-
38049001166
-
Non-fermentative pathways for synthesis of branched-chain higher alcohols as biofuels
-
10.1038/nature06450 18172501
-
Non-fermentative pathways for synthesis of branched-chain higher alcohols as biofuels. Atsumi S, Hanai T, Liao JC, Nature 2008 451 86 U13 10.1038/nature06450 18172501
-
(2008)
Nature
, vol.451
-
-
Atsumi, S.1
Hanai, T.2
Liao, J.C.3
-
59
-
-
0034606690
-
Characterization of recombinant strains of the Clostridium acetobutylicum butyrate kinase inactivation mutant: Need for new phenomenological models for solventogenesis and butanol inhibition?
-
DOI 10.1002/(SI CI)1097-0290(200001 05)67:1<1::AID-B IT1>3.0.CO;2-G
-
Characterization of recombinant strains of the Clostridium acetobutylicum butyrate kinase inactivation mutant: need for new phenomenological models for solventogenesis and butanol inhibition? Harris L, Desai R, Welker N, Papoutsakis E, Biotechnol Bioeng 2000 67 1 11 10.1002/(SICI)1097-0290(20000105)67:1<1:: AID-BIT1>3.0.CO;2-G 10581430 (Pubitemid 30029420)
-
(2000)
Biotechnology and Bioengineering
, vol.67
, Issue.1
, pp. 1-11
-
-
Harris, L.M.1
Desai, R.P.2
Welker, N.E.3
Papoutsakis, E.T.4
-
60
-
-
10944238461
-
Butanol fermentation research: Upstream and downstream manipulations
-
DOI 10.1002/tcr.20023
-
Butanol fermentation research: Upstream and downstream manipulations. Ezeji T, Qureshi N, Blaschek H, Chem Rec 2004 4 305 314 10.1002/tcr.20023 15543610 (Pubitemid 40012824)
-
(2004)
Chemical Record
, vol.4
, Issue.5
, pp. 305-314
-
-
Ezeji, T.C.1
Qureshi, N.2
Blaschek, H.P.3
-
61
-
-
79955611425
-
Driving forces enable high-titer anaerobic 1-butanol synthesis in Escherichia coli
-
10.1128/AEM.03034-10 21398484
-
Driving forces enable high-titer anaerobic 1-butanol synthesis in Escherichia coli. Shen CR, Lan EI, Dekishima Y, Baez A, Cho KM, Liao JC, Appl Environ Microbiol 2011 77 2905 2915 10.1128/AEM.03034-10 21398484
-
(2011)
Appl Environ Microbiol
, vol.77
, pp. 2905-2915
-
-
Shen, C.R.1
Lan, E.I.2
Dekishima, Y.3
Baez, A.4
Cho, K.M.5
Liao, J.C.6
-
62
-
-
71249083129
-
Tolerance and stress response to ethanol in the yeast Saccharomyces cerevisiae
-
10.1007/s00253-009-2223-1 19756577
-
Tolerance and stress response to ethanol in the yeast Saccharomyces cerevisiae. Ding J, Huang X, Zhang L, Zhao N, Yang D, Zhang K, Appl Microbiol Biotechnol 2009 85 253 263 10.1007/s00253-009-2223-1 19756577
-
(2009)
Appl Microbiol Biotechnol
, vol.85
, pp. 253-263
-
-
Ding, J.1
Huang, X.2
Zhang, L.3
Zhao, N.4
Yang, D.5
Zhang, K.6
-
63
-
-
67651037266
-
Stress-tolerance of baker's-yeast (Saccharomyces cerevisiae) cells: Stress-protective molecules and genes involved in stress tolerance
-
10.1042/BA20090029 19476439
-
Stress-tolerance of baker's-yeast (Saccharomyces cerevisiae) cells: stress-protective molecules and genes involved in stress tolerance. Shima J, Takagi H, Biotechnol Appl Biochem 2009 53 155 164 10.1042/BA20090029 19476439
-
(2009)
Biotechnol Appl Biochem
, vol.53
, pp. 155-164
-
-
Shima, J.1
Takagi, H.2
-
64
-
-
34548716431
-
Development of ethanologenic bacteria
-
DOI 10.1007/10-2007-068, Biofuels
-
Development of ethanologenic bacteria. Jarboe LR, Grabar TB, Yomano LP, Shanmugan KT, Ingram LO, Adv Biochem Eng Biotechnol 2007 108 237 261 17665158 (Pubitemid 47434548)
-
(2007)
Advances in Biochemical Engineering/Biotechnology
, vol.108
, pp. 237-261
-
-
Jarboe, L.R.1
Grabar, T.B.2
Yomano, L.P.3
Shanmugan, K.T.4
Ingram, L.O.5
-
65
-
-
0034608443
-
Effect of alcohol compounds found in hemicellulose hydrolysate on the growth and fermentation of ethanologenic Escherichia coli
-
DOI 10.1002/(SIC I)1097-0290(2000060 5)68:5<524::AI D-BIT6>3.0.CO;2-T
-
Effect of alcohol compounds found in hemicellulose hydrolysate on the growth and fermentation of ethanologenic Escherichia coli. Zaldivar J, Martinez A, Ingram L, Biotechnol Bioeng 2000 68 524 530 10.1002/(SICI)1097-0290(20000605) 68:5<524::AID-BIT6>3.0.CO;2-T 10797238 (Pubitemid 30307722)
-
(2000)
Biotechnology and Bioengineering
, vol.68
, Issue.5
, pp. 524-530
-
-
Zaldivar, J.1
Martinez, A.2
Ingram, L.O.3
-
66
-
-
78649736611
-
Challenges in biobutanol production: How to improve the efficiency?
-
10.1016/j.rser.2010.11.008
-
Challenges in biobutanol production: how to improve the efficiency? García V, Päkkilä J, Ojamo H, Muurinen E, Keiski R, Renew Sust Energy Rev 2011 15 964 980 10.1016/j.rser.2010.11.008
-
(2011)
Renew Sust Energy Rev
, vol.15
, pp. 964-980
-
-
García, V.1
Päkkilä, J.2
Ojamo, H.3
Muurinen, E.4
Keiski, R.5
-
67
-
-
33947286326
-
Increased tolerance and conversion of inhibitors in lignocellulosic hydrolysates by Saccharomyces cerevisiae
-
DOI 10.1002/jctb.1676
-
Increased tolerance and conversion of inhibitors in lignocellulosic hydrolysates by Saccharomyces cerevisiae. Almeida JRM, Modig T, Petersson A, Hahn-Hagerdal B, Liden G, Gorwa-Grauslund MF, J Chem Technol Biot 2007 82 340 349 10.1002/jctb.1676 (Pubitemid 46672130)
-
(2007)
Journal of Chemical Technology and Biotechnology
, vol.82
, Issue.4
, pp. 340-349
-
-
Almeida, J.R.M.1
Modig, T.2
Petersson, A.3
Hahn-Hagerdal, B.4
Liden, G.5
Gorwa-Grauslund, M.-F.6
-
68
-
-
70449413186
-
Cellulosic hydrolysate toxicity and tolerance mechanisms in Escherichia coli
-
10.1186/1754-6834-2-26 19832972
-
Cellulosic hydrolysate toxicity and tolerance mechanisms in Escherichia coli. Mills TY, Sandoval NR, Gill RT, Biotechnol Biofuels 2009 2 26 10.1186/1754-6834-2-26 19832972
-
(2009)
Biotechnol Biofuels
, vol.2
, pp. 26
-
-
Mills, T.Y.1
Sandoval, N.R.2
Gill, R.T.3
-
69
-
-
68149124672
-
Role of pretreatment and conditioning processes on toxicity of lignocellulosic biomass hydrolysates
-
10.1007/s10570-009-9309-x
-
Role of pretreatment and conditioning processes on toxicity of lignocellulosic biomass hydrolysates. Pienkos P, Zhang M, Cellulose 2009 16 743 762 10.1007/s10570-009-9309-x
-
(2009)
Cellulose
, vol.16
, pp. 743-762
-
-
Pienkos, P.1
Zhang, M.2
-
70
-
-
76649111044
-
Advanced biofuel production in microbes
-
10.1002/biot.200900220 20084640
-
Advanced biofuel production in microbes. Peralta-Yahya PP, Keasling JD, Biotechnol J 2010 5 147 162 10.1002/biot.200900220 20084640
-
(2010)
Biotechnol J
, vol.5
, pp. 147-162
-
-
Peralta-Yahya, P.P.1
Keasling, J.D.2
-
71
-
-
77950626597
-
3-Methyl-1-butanol production in Escherichia coli: Random mutagenesis and two-phase fermentation
-
10.1007/s00253-009-2401-1 20072783
-
3-Methyl-1-butanol production in Escherichia coli: random mutagenesis and two-phase fermentation. Connor MR, Cann AF, Liao JC, Appl Microbiol Biotechnol 2010 86 1155 1164 10.1007/s00253-009-2401-1 20072783
-
(2010)
Appl Microbiol Biotechnol
, vol.86
, pp. 1155-1164
-
-
Connor, M.R.1
Cann, A.F.2
Liao, J.C.3
-
72
-
-
0032142728
-
Improvement of organic solvent tolerance level of Escherichia coli by overexpression of stress-responsive genes
-
DOI 10.1007/s007920050066
-
Improvement of organic solvent tolerance level of Escherichia coli by overexpression of stress-responsive genes. Aono R, Extremophiles 1998 2 239 248 10.1007/s007920050066 9783171 (Pubitemid 28408005)
-
(1998)
Extremophiles
, vol.2
, Issue.3
, pp. 239-248
-
-
Aono, R.1
-
73
-
-
0035091452
-
Suppression of hypersensitivity of Escherichia coli acrB mutant to organic solvents by integrational activation of the acrEF operon with the IS1 or IS2 element
-
DOI 10.1128/JB.183.8.2646-2653.2001
-
Suppression of hypersensitivity of Escherichia coli acrB mutant to organic solvents by integrational activation of the acrEF operon with the IS1 of IS2 element. Kobayashi K, Tsukagoshi N, Aono R, J Bacteriol 2001 183 2646 2653 10.1128/JB.183.8.2646-2653.2001 11274125 (Pubitemid 32249774)
-
(2001)
Journal of Bacteriology
, vol.183
, Issue.8
, pp. 2646-2653
-
-
Kobayashi, K.1
Tsukagoshi, N.2
Aono, R.3
|