메뉴 건너뛰기




Volumn 6, Issue 9, 2011, Pages

Inferring species trees from gene trees in a radiation of california trapdoor spiders (Araneae, Antrodiaetidae, Aliatypus)

Author keywords

[No Author keywords available]

Indexed keywords

RNA 28S;

EID: 80053148534     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0025355     Document Type: Article
Times cited : (42)

References (77)
  • 2
    • 0034838124 scopus 로고    scopus 로고
    • Stream incision, tectonics, uplift, and evolution of topography of the Sierra Nevada, California
    • Wakabayashi J, Sawyer TL, (2001) Stream incision, tectonics, uplift, and evolution of topography of the Sierra Nevada, California. Journal of Geology 109: 539-562.
    • (2001) Journal of Geology , vol.109 , pp. 539-562
    • Wakabayashi, J.1    Sawyer, T.L.2
  • 3
    • 0036657007 scopus 로고    scopus 로고
    • Falling apart and merging: diversification of slender salamanders (Plethodontidae: Batrachoseps) in the American West
    • Jockusch EL, Wake DB, (2002) Falling apart and merging: diversification of slender salamanders (Plethodontidae: Batrachoseps) in the American West. Biological Journal of the Linnean Society 76: 361-391.
    • (2002) Biological Journal of the Linnean Society , vol.76 , pp. 361-391
    • Jockusch, E.L.1    Wake, D.B.2
  • 4
    • 33745020268 scopus 로고    scopus 로고
    • Comparative phylogeography of woodland reptiles in California: repeated patterns of cladogenesis and population expansion
    • Feldman CR, Spicer GS, (2006) Comparative phylogeography of woodland reptiles in California: repeated patterns of cladogenesis and population expansion. Molecular Ecology 15: 2201-2222.
    • (2006) Molecular Ecology , vol.15 , pp. 2201-2222
    • Feldman, C.R.1    Spicer, G.S.2
  • 5
    • 33846483825 scopus 로고    scopus 로고
    • Multilocus genealogies reveal multiple cryptic species and biogeographical complexity in the California turret spider Antrodiaetus riversi (Mygalomorphae, Antrodiaetidae)
    • Starrett J, Hedin M, (2007) Multilocus genealogies reveal multiple cryptic species and biogeographical complexity in the California turret spider Antrodiaetus riversi (Mygalomorphae, Antrodiaetidae). Molecular Ecology 16: 583-604.
    • (2007) Molecular Ecology , vol.16 , pp. 583-604
    • Starrett, J.1    Hedin, M.2
  • 6
    • 61849120412 scopus 로고    scopus 로고
    • An integrative method for delimiting cohesion species: Finding the population: species interface in a group of Californian trapdoor spiders with extreme genetic divergence and geographic structuring
    • Bond JE, Stockman AK, (2008) An integrative method for delimiting cohesion species: Finding the population: species interface in a group of Californian trapdoor spiders with extreme genetic divergence and geographic structuring. Syst Biol 57: 628-646.
    • (2008) Syst Biol , vol.57 , pp. 628-646
    • Bond, J.E.1    Stockman, A.K.2
  • 7
    • 37349126038 scopus 로고    scopus 로고
    • The California hotspots project: identifying regions of rapid diversification of mammals
    • Davis EB, Koo MS, Conroy C, Patton JL, Moritz C, (2008) The California hotspots project: identifying regions of rapid diversification of mammals. Molecular Ecology 17: 120-138.
    • (2008) Molecular Ecology , vol.17 , pp. 120-138
    • Davis, E.B.1    Koo, M.S.2    Conroy, C.3    Patton, J.L.4    Moritz, C.5
  • 8
    • 64749112839 scopus 로고    scopus 로고
    • Closing the ring: historical biogeography of the salamander ring species Ensatina eschscholtzii
    • Kuchta SR, Parks DS, Mueller RL, Wake DB, (2009a) Closing the ring: historical biogeography of the salamander ring species Ensatina eschscholtzii. J Biogeogr 36: 982-995.
    • (2009) J Biogeogr , vol.36 , pp. 982-995
    • Kuchta, S.R.1    Parks, D.S.2    Mueller, R.L.3    Wake, D.B.4
  • 9
    • 78649278541 scopus 로고    scopus 로고
    • Lineage divergence and speciation in the Web-toed Salamanders (Plethodontida: Hydromantes) of the Sierra Nevada, California
    • Rovito SM, (2010) Lineage divergence and speciation in the Web-toed Salamanders (Plethodontida: Hydromantes) of the Sierra Nevada, California. Molecular Ecology 19: 4554-4571.
    • (2010) Molecular Ecology , vol.19 , pp. 4554-4571
    • Rovito, S.M.1
  • 10
    • 0036828489 scopus 로고    scopus 로고
    • Phylogeny and taxonomy of the genera of south-western North American Euctenizinae trapdoor spiders and their relatives (Araneae: Mygalomorphae: Cyrtaucheniidae)
    • Bond JE, Opell BD, (2002) Phylogeny and taxonomy of the genera of south-western North American Euctenizinae trapdoor spiders and their relatives (Araneae: Mygalomorphae: Cyrtaucheniidae). Zool J Linn Soc 136: 487-534.
    • (2002) Zool J Linn Soc , vol.136 , pp. 487-534
    • Bond, J.E.1    Opell, B.D.2
  • 11
    • 0000782844 scopus 로고
    • Systematics of the trapdoor spider genus Aliatypus (Araneae: Antrodiaetidae)
    • Coyle FA, (1974) Systematics of the trapdoor spider genus Aliatypus (Araneae: Antrodiaetidae). Psyche 81: 431-500.
    • (1974) Psyche , vol.81 , pp. 431-500
    • Coyle, F.A.1
  • 12
    • 0028251440 scopus 로고
    • Natural history of the Californian trapdoor spider genus Aliatypus (Araneae, Antrodiaetidae)
    • Coyle FA, Icenogle WR, (1994) Natural history of the Californian trapdoor spider genus Aliatypus (Araneae, Antrodiaetidae). The Journal of Arachnology 22: 225-255.
    • (1994) The Journal of Arachnology , vol.22 , pp. 225-255
    • Coyle, F.A.1    Icenogle, W.R.2
  • 13
    • 33745590866 scopus 로고    scopus 로고
    • Problems with species: Patterns and processes of species formation in salamanders
    • Wake DB, (2006) Problems with species: Patterns and processes of species formation in salamanders. Ann Missouri Bot Gard 93: 8-23.
    • (2006) Ann Missouri Bot Gard , vol.93 , pp. 8-23
    • Wake, D.B.1
  • 14
    • 1642304378 scopus 로고
    • A reinterpretation of the concepts "sympatric" and "allopatric" with proposal of the additional terms "syntopic" and "allotropic."
    • Rivas LR, (1964) A reinterpretation of the concepts "sympatric" and "allopatric" with proposal of the additional terms "syntopic" and "allotropic." Syst Zool 13: 42-43.
    • (1964) Syst Zool , vol.13 , pp. 42-43
    • Rivas, L.R.1
  • 15
    • 21844483531 scopus 로고
    • Cladistic analysis of the species of the trapdoor spider genus Aliatypus (Araneae, Antrodiaetidae)
    • Coyle FA, (1994) Cladistic analysis of the species of the trapdoor spider genus Aliatypus (Araneae, Antrodiaetidae). The Journal of Arachnology 22: 218-224.
    • (1994) The Journal of Arachnology , vol.22 , pp. 218-224
    • Coyle, F.A.1
  • 16
    • 79960264785 scopus 로고    scopus 로고
    • A new trapdoor spider species from the southern Coast Ranges of California (Mygalomorphae, Antrodiaetidae, Aliatypus coylei, sp. nov,), including consideration of mitochondrial phylogeographic structuring
    • Hedin H, Carlson D, (2011) A new trapdoor spider species from the southern Coast Ranges of California (Mygalomorphae, Antrodiaetidae, Aliatypus coylei, sp. nov,), including consideration of mitochondrial phylogeographic structuring. Zootaxa 2963: 55-68.
    • (2011) Zootaxa , vol.2963 , pp. 55-68
    • Hedin, H.1    Carlson, D.2
  • 17
    • 34547442865 scopus 로고    scopus 로고
    • Mitochondrial markers reveal deep population subdivision in the European protected spider Macrothele calpeiana (Walckenaer, 1805) (Araneae, Hexathelidae)
    • Arnedo MA, Ferrandez M, (2007) Mitochondrial markers reveal deep population subdivision in the European protected spider Macrothele calpeiana (Walckenaer, 1805) (Araneae, Hexathelidae). Conserv Genet 8: 1147-1162.
    • (2007) Conserv Genet , vol.8 , pp. 1147-1162
    • Arnedo, M.A.1    Ferrandez, M.2
  • 18
    • 77958056150 scopus 로고    scopus 로고
    • Estimating species trees: an introduction to concepts and models
    • In: Knowles LL, Kubatko LS, editors, Wiley-Blackwell
    • Knowles LL, Kubatko LS, (2010) Estimating species trees: an introduction to concepts and models. In: Knowles LL, Kubatko LS, editors. Estimating species trees: practical and theoretical aspects Wiley-Blackwell pp. 1-14.
    • (2010) Estimating Species Trees: Practical and Theoretical Aspects , pp. 1-14
    • Knowles, L.L.1    Kubatko, L.S.2
  • 19
    • 78650161506 scopus 로고    scopus 로고
    • Species delimitation - a geneious plugin for the exploration of species boundaries
    • Master BC, Fan V, Ross HA, (2011) Species delimitation - a geneious plugin for the exploration of species boundaries. Molecular Ecology Resources 11: 154-157.
    • (2011) Molecular Ecology Resources , vol.11 , pp. 154-157
    • Master, B.C.1    Fan, V.2    Ross, H.A.3
  • 21
    • 41849149675 scopus 로고    scopus 로고
    • Testing the reliability of genetic methods of species identification via simulation
    • Ross HA, Murugan S, Li WLS, (2008) Testing the reliability of genetic methods of species identification via simulation. Syst Biol 57: 216-230.
    • (2008) Syst Biol , vol.57 , pp. 216-230
    • Ross, H.A.1    Murugan, S.2    Li, W.L.S.3
  • 22
    • 33847303503 scopus 로고    scopus 로고
    • Molecular phylogeny and biogeography of an ancient Holarctic lineage of mygalomorph spiders (Araneae: Antrodiaetidae: Antrodiaetus)
    • Hendrixson BE, Bond JE, (2007) Molecular phylogeny and biogeography of an ancient Holarctic lineage of mygalomorph spiders (Araneae: Antrodiaetidae: Antrodiaetus). Molecular Phylogenetics and Evolution 42: 738-755.
    • (2007) Molecular Phylogenetics and Evolution , vol.42 , pp. 738-755
    • Hendrixson, B.E.1    Bond, J.E.2
  • 23
    • 4444299144 scopus 로고    scopus 로고
    • TOPALi: software for automatic identification of recombinant sequences within DNA multiple alignments
    • Milne I, Wright F, Rowe G, Marshall DF, Husmeier D, et al. (2004) TOPALi: software for automatic identification of recombinant sequences within DNA multiple alignments. Bioinformatics 20: 1806-1807.
    • (2004) Bioinformatics , vol.20 , pp. 1806-1807
    • Milne, I.1    Wright, F.2    Rowe, G.3    Marshall, D.F.4    Husmeier, D.5
  • 24
    • 58049218990 scopus 로고    scopus 로고
    • TOPALi v2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops
    • Milne I, Lindner D, Bayer M, Husmeier D, McGuire G, et al. (2009) TOPALi v2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops. Bioinformatics 25: 126-127.
    • (2009) Bioinformatics , vol.25 , pp. 126-127
    • Milne, I.1    Lindner, D.2    Bayer, M.3    Husmeier, D.4    McGuire, G.5
  • 25
    • 13744252890 scopus 로고    scopus 로고
    • MAFFT version 5: improvement in accuracy of multiple sequence alignment
    • Katoh K, Kuma K, Toh H, Miyata T, (2005) MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Research 33: 511-518.
    • (2005) Nucleic Acids Research , vol.33 , pp. 511-518
    • Katoh, K.1    Kuma, K.2    Toh, H.3    Miyata, T.4
  • 26
    • 34248374330 scopus 로고    scopus 로고
    • An enhanced RNA alignment benchmark for sequence alignment programs
    • Wilm A, Mainz I, Steger G, (2006) An enhanced RNA alignment benchmark for sequence alignment programs. Algorithms for Molecular Biology 1: 19.
    • (2006) Algorithms for Molecular Biology , vol.1 , pp. 19
    • Wilm, A.1    Mainz, I.2    Steger, G.3
  • 27
    • 0034043778 scopus 로고    scopus 로고
    • Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
    • Castresana J, (2000) Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 17: 540-552.
    • (2000) Mol Biol Evol , vol.17 , pp. 540-552
    • Castresana, J.1
  • 28
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast and accurate method to estimate large phylogenies by maximum-likelihood
    • Guindon S, Gascuel O, (2003) A simple, fast and accurate method to estimate large phylogenies by maximum-likelihood. Syst Biol 52: 696-704.
    • (2003) Syst Biol , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 29
    • 45849154165 scopus 로고    scopus 로고
    • jModelTest: Phylogenetic model averaging
    • Posada D, (2008) jModelTest: Phylogenetic model averaging. Molecular Biology and Evolution 25: 1253-1256.
    • (2008) Molecular Biology and Evolution , vol.25 , pp. 1253-1256
    • Posada, D.1
  • 30
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: Bayesian inference of phylogeny
    • Huelsenbeck JP, Ronquist F, (2001) MRBAYES: Bayesian inference of phylogeny. Bioinformatics 17: 754-755.
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 31
    • 0041386108 scopus 로고    scopus 로고
    • MRBAYES 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F, Huelsenbeck JP, (2003) MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 32
    • 77955300661 scopus 로고    scopus 로고
    • Tracer v1.5
    • Available:. Accessed 2010 Apr 21
    • Rambaut A, Drummond AJ, (2007) Tracer v1.5. Available: http://beast.bio.ed.ac.uk/Tracer. Accessed 2010 Apr 21.
    • (2007)
    • Rambaut, A.1    Drummond, A.J.2
  • 33
    • 0031504952 scopus 로고    scopus 로고
    • Gene trees in species trees
    • Maddison WP, (1997) Gene trees in species trees. Syst Biol 46: 523-536.
    • (1997) Syst Biol , vol.46 , pp. 523-536
    • Maddison, W.P.1
  • 34
    • 58249100073 scopus 로고    scopus 로고
    • Is a new and general theory of molecular systematics emerging?
    • Edwards SV, (2009) Is a new and general theory of molecular systematics emerging? Evolution 63: 1-19.
    • (2009) Evolution , vol.63 , pp. 1-19
    • Edwards, S.V.1
  • 36
    • 58149236596 scopus 로고    scopus 로고
    • Resolving arthropod phylogeny: Exploring phylogenetic signal within 41 kb of protein-coding nuclear gene sequence
    • Regier JC, Shultz JW, Ganley ARD, Hussey A, Shi D, et al. (2008) Resolving arthropod phylogeny: Exploring phylogenetic signal within 41 kb of protein-coding nuclear gene sequence. Syst Biol 57: 920-938.
    • (2008) Syst Biol , vol.57 , pp. 920-938
    • Regier, J.C.1    Shultz, J.W.2    Ganley, A.R.D.3    Hussey, A.4    Shi, D.5
  • 37
    • 43749109878 scopus 로고    scopus 로고
    • Branch lengths, support, and congruence: Testing the phylogenomic approach with 20 nuclear loci in snakes
    • Wiens JJ, Kuczynski CA, Smith SA, Mulcahy DG, Sites JW Jr, et al. (2008) Branch lengths, support, and congruence: Testing the phylogenomic approach with 20 nuclear loci in snakes. Syst Biol 57: 420-431.
    • (2008) Syst Biol , vol.57 , pp. 420-431
    • Wiens, J.J.1    Kuczynski, C.A.2    Smith, S.A.3    Mulcahy, D.G.4    Sites Jr., J.W.5
  • 38
    • 33646928341 scopus 로고    scopus 로고
    • Discordance of species trees with their most likely gene trees
    • Degnan JH, Rosenberg NA, (2006) Discordance of species trees with their most likely gene trees. PLoS Genetics pp. e68.
    • (2006) PLoS Genetics
    • Degnan, J.H.1    Rosenberg, N.A.2
  • 39
    • 65649131928 scopus 로고    scopus 로고
    • Gene tree discordance, phylogenetic inference and the multispecies coalescent
    • Vol. 24 No. 6
    • Degnan JH, Rosenberg NA, (2009) Gene tree discordance, phylogenetic inference and the multispecies coalescent. Trends in Ecology and Evolution Vol. 24 No. 6.
    • (2009) Trends in Ecology and Evolution
    • Degnan, J.H.1    Rosenberg, N.A.2
  • 40
    • 33847302458 scopus 로고    scopus 로고
    • Inconsistency of phylogenetic estimates from concatenated data under coalescence
    • Kubatko LS, Degnan JH, (2007) Inconsistency of phylogenetic estimates from concatenated data under coalescence. Syst Biol 56: 17-24.
    • (2007) Syst Biol , vol.56 , pp. 17-24
    • Kubatko, L.S.1    Degnan, J.H.2
  • 41
    • 77249086587 scopus 로고    scopus 로고
    • Bayesian inference of species trees from multilocus data
    • Heled J, Drummond AJ, (2010) Bayesian inference of species trees from multilocus data. Mol Bio Evol 27: 570-580.
    • (2010) Mol Bio Evol , vol.27 , pp. 570-580
    • Heled, J.1    Drummond, A.J.2
  • 42
    • 38649110663 scopus 로고    scopus 로고
    • BEAST: Bayesian evolutionary analysis by sampling trees
    • Drummond AJ, Rambaut A, (2007) BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evolutionary Biology 7: 214.
    • (2007) BMC Evolutionary Biology , vol.7 , pp. 214
    • Drummond, A.J.1    Rambaut, A.2
  • 44
    • 0036804707 scopus 로고    scopus 로고
    • An examination of the monophyly of morning glory taxa using Bayesian phylogenetic inference
    • Miller RE, Buckley TR, Manos PS, (2002) An examination of the monophyly of morning glory taxa using Bayesian phylogenetic inference. Syst Biol 51: 740-753.
    • (2002) Syst Biol , vol.51 , pp. 740-753
    • Miller, R.E.1    Buckley, T.R.2    Manos, P.S.3
  • 45
    • 34547482037 scopus 로고    scopus 로고
    • Summarizing a posterior distribution using agreement subtrees
    • Cranston KA, Rannala B, (2007) Summarizing a posterior distribution using agreement subtrees. Syst Biol 56: 578-590.
    • (2007) Syst Biol , vol.56 , pp. 578-590
    • Cranston, K.A.1    Rannala, B.2
  • 46
    • 0004248459 scopus 로고    scopus 로고
    • PAUP*: Phylogenetic Analysis Using Parsimony (*and Other Methods)
    • Version 4. Sinauer Associates, Sunderland, Massachusetts
    • Swofford DL, (2002) PAUP*: Phylogenetic Analysis Using Parsimony (*and Other Methods). Version 4. Sinauer Associates, Sunderland, Massachusetts.
    • (2002)
    • Swofford, D.L.1
  • 47
    • 0030732297 scopus 로고    scopus 로고
    • A graphical method for detecting recombination in phylogenetic data sets
    • McGuire G, Wright F, Prentice MJ, (1997) A graphical method for detecting recombination in phylogenetic data sets. Mol Biol Evol 14: 1125-1131.
    • (1997) Mol Biol Evol , vol.14 , pp. 1125-1131
    • McGuire, G.1    Wright, F.2    Prentice, M.J.3
  • 48
    • 0034097468 scopus 로고    scopus 로고
    • TOPAL 2.0: improved detection of mosaic sequences within multiple alignments
    • McGuire G, Wright F, (2000) TOPAL 2.0: improved detection of mosaic sequences within multiple alignments. Bioinformatics 16: 130-134.
    • (2000) Bioinformatics , vol.16 , pp. 130-134
    • McGuire, G.1    Wright, F.2
  • 49
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura M, (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16: 111-120.
    • (1980) J Mol Evol , vol.16 , pp. 111-120
    • Kimura, M.1
  • 50
    • 79951561454 scopus 로고    scopus 로고
    • The accuracy of species tree estimation under simulation: a comparison of methods
    • Leaché AD, Rannala B, (2011) The accuracy of species tree estimation under simulation: a comparison of methods. Syst Biol 60: 126-137.
    • (2011) Syst Biol , vol.60 , pp. 126-137
    • Leaché, A.D.1    Rannala, B.2
  • 52
    • 31344432889 scopus 로고    scopus 로고
    • The promise of DNA barcoding for taxonomy
    • Hebert PDN, Gregory TR, (2005) The promise of DNA barcoding for taxonomy. Syst Biol 54: 852-859.
    • (2005) Syst Biol , vol.54 , pp. 852-859
    • Hebert, P.D.N.1    Gregory, T.R.2
  • 53
    • 33847411916 scopus 로고    scopus 로고
    • DNA barcoding in animal species: progress, potential and pitfalls
    • Waugh J, (2007) DNA barcoding in animal species: progress, potential and pitfalls. BioEssays 29: 188-197.
    • (2007) BioEssays , vol.29 , pp. 188-197
    • Waugh, J.1
  • 54
    • 34247556977 scopus 로고    scopus 로고
    • DNA barcodes affirm that 16 species of apparently generalist tropical parasitoid flies (Diptera, Tachinidae) are not all generalists
    • Smith MA, Wood DM, Janzen DH, Hallwachs W, Hebert PDN, (2007) DNA barcodes affirm that 16 species of apparently generalist tropical parasitoid flies (Diptera, Tachinidae) are not all generalists. Proc Natl Acad Sci U S A 104: 4967-4972.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 4967-4972
    • Smith, M.A.1    Wood, D.M.2    Janzen, D.H.3    Hallwachs, W.4    Hebert, P.D.N.5
  • 55
    • 50449102560 scopus 로고    scopus 로고
    • Extreme diversity of tropical parasitoid wasps exposed by iterative integration of natural history, DNA barcoding, morphology, and collections
    • Smith MA, Rodriguez JJ, Whitfield JB, Deans AR, Janzen DH, et al. (2008) Extreme diversity of tropical parasitoid wasps exposed by iterative integration of natural history, DNA barcoding, morphology, and collections. Proc Natl Acad Sci U S A 105: 12359-12364.
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 12359-12364
    • Smith, M.A.1    Rodriguez, J.J.2    Whitfield, J.B.3    Deans, A.R.4    Janzen, D.H.5
  • 56
    • 70649097000 scopus 로고    scopus 로고
    • Molecular systematics of eastern North American Phalangodidae (Arachnida: Opiliones: Laniatores), demonstrating convergent morphological evolution in caves
    • Hedin M, Thomas SM, (2010) Molecular systematics of eastern North American Phalangodidae (Arachnida: Opiliones: Laniatores), demonstrating convergent morphological evolution in caves. Molecular Phylogenetics and Evolution 54: 107-121.
    • (2010) Molecular Phylogenetics and Evolution , vol.54 , pp. 107-121
    • Hedin, M.1    Thomas, S.M.2
  • 57
    • 33748892273 scopus 로고    scopus 로고
    • Molecular phylogenetics of the spider Infraorder Mygalomorphae using nuclear rRNA genes (18S and 28S): Conflict and agreement with the current system of classification
    • Hedin M, Bond JE, (2006) Molecular phylogenetics of the spider Infraorder Mygalomorphae using nuclear rRNA genes (18S and 28S): Conflict and agreement with the current system of classification. Molecular Phylogenetics and Evolution 41: 454-471.
    • (2006) Molecular Phylogenetics and Evolution , vol.41 , pp. 454-471
    • Hedin, M.1    Bond, J.E.2
  • 58
    • 0036007849 scopus 로고    scopus 로고
    • Phylogeographical structure and regional history of the dusky-footed woodrat, Neotoma fuscipes
    • Matocq MD, (2002) Phylogeographical structure and regional history of the dusky-footed woodrat, Neotoma fuscipes. Molecular Ecology 11: 229-242.
    • (2002) Molecular Ecology , vol.11 , pp. 229-242
    • Matocq, M.D.1
  • 59
    • 20144381887 scopus 로고    scopus 로고
    • Range-wide molecular analysis of the western pond turtle (Emys marmorata): cryptic variation, isolation by distance, and their conservation implications
    • Spinks PQ, Shaffer HB, (2005) Range-wide molecular analysis of the western pond turtle (Emys marmorata): cryptic variation, isolation by distance, and their conservation implications. Molecular Ecology 14: 2047-2064.
    • (2005) Molecular Ecology , vol.14 , pp. 2047-2064
    • Spinks, P.Q.1    Shaffer, H.B.2
  • 60
    • 33748783053 scopus 로고    scopus 로고
    • Lineage diversification on an evolving landscape: phylogeography of the California newt, Taricha torosa (Caudata: Salamandridae)
    • Kuchta SR, Tan A, (2006) Lineage diversification on an evolving landscape: phylogeography of the California newt, Taricha torosa (Caudata: Salamandridae). Biological Journal of the Linnean Society 89: 213-239.
    • (2006) Biological Journal of the Linnean Society , vol.89 , pp. 213-239
    • Kuchta, S.R.1    Tan, A.2
  • 61
    • 0000993195 scopus 로고
    • Quaternary geology of the Monterey Bay region, California
    • In: Garrison RE, Greene HG, Hicks KR, Weber GE, Wright TL, editors, Bakersfield, California, The Pacific Section of the American Association of Petroleum Geologists
    • Dupré WR, (1990) Quaternary geology of the Monterey Bay region, California. In: Garrison RE, Greene HG, Hicks KR, Weber GE, Wright TL, editors. Geology and tectonics of the central California Coastal Region, San Francisco to Monterey Bakersfield, California The Pacific Section of the American Association of Petroleum Geologists pp. 185-191.
    • (1990) Geology and Tectonics of the Central California Coastal Region, San Francisco to Monterey , pp. 185-191
    • Dupré, W.R.1
  • 62
    • 58149460736 scopus 로고    scopus 로고
    • Nearshore marine paleoclimate regions, increasing zoogeographic provinciality, molluscan extinctions, and paleoshorelines, California: late Oligocene (27 Ma) to late Pliocene (2.5 Ma)
    • Hall CAJ, (2002) Nearshore marine paleoclimate regions, increasing zoogeographic provinciality, molluscan extinctions, and paleoshorelines, California: late Oligocene (27 Ma) to late Pliocene (2.5 Ma). Geol Soc Am Special Paper 357: v-489.
    • (2002) Geol Soc Am Special Paper , vol.357
    • Hall, C.A.J.1
  • 63
    • 34848912488 scopus 로고    scopus 로고
    • Extreme population subdivision throughout a continuous range: phylogeography of Batrachoseps attenuatus (Caudata: Plethodontidae) in western North America
    • Martinez-Solano I, Jockusch EL, Wake DB, (2007) Extreme population subdivision throughout a continuous range: phylogeography of Batrachoseps attenuatus (Caudata: Plethodontidae) in western North America. Molecular Ecology 16: 4335-4355.
    • (2007) Molecular Ecology , vol.16 , pp. 4335-4355
    • Martinez-Solano, I.1    Jockusch, E.L.2    Wake, D.B.3
  • 64
    • 0022824417 scopus 로고
    • Geographic variation in allozymes in a "ring species," the Plethodontid salamander Ensatina eschscholtzii of western North America
    • Wake DB, Yanev KP, (1986) Geographic variation in allozymes in a "ring species," the Plethodontid salamander Ensatina eschscholtzii of western North America. Evolution 40: 702-715.
    • (1986) Evolution , vol.40 , pp. 702-715
    • Wake, D.B.1    Yanev, K.P.2
  • 65
    • 58049176342 scopus 로고    scopus 로고
    • Pronounced phylogeographic structure on a small spatial scale: Geomorphological evolution and lineage history in the salamander ring species Ensatina eschscholtzii in central coastal California
    • Kuchta SR, Parks DS, Wake DB, (2009b) Pronounced phylogeographic structure on a small spatial scale: Geomorphological evolution and lineage history in the salamander ring species Ensatina eschscholtzii in central coastal California. Molecular Phylogenetics and Evolution 50: 240-255.
    • (2009) Molecular Phylogenetics and Evolution , vol.50 , pp. 240-255
    • Kuchta, S.R.1    Parks, D.S.2    Wake, D.B.3
  • 66
    • 23044447420 scopus 로고    scopus 로고
    • Congruence, consensus, and the comparative phylogeography of codistributed species in California
    • Lapointe FJ, Rissler LJ, (2005) Congruence, consensus, and the comparative phylogeography of codistributed species in California. American Naturalist 166: 290-299.
    • (2005) American Naturalist , vol.166 , pp. 290-299
    • Lapointe, F.J.1    Rissler, L.J.2
  • 67
    • 34548304083 scopus 로고    scopus 로고
    • Toward a better understanding of the "transverse range break": Lineage diversification in southern California
    • Chatzimanolis S, Caterino MS, (2007) Toward a better understanding of the "transverse range break": Lineage diversification in southern California. Evolution 61: 2127-2141.
    • (2007) Evolution , vol.61 , pp. 2127-2141
    • Chatzimanolis, S.1    Caterino, M.S.2
  • 68
    • 58149469218 scopus 로고    scopus 로고
    • High genetic diversity among fossorial lizard populations (Anniella pulchra) in a rapidly developing landscape (Central California)
    • Parham JF, Papenfuss TJ, (2009) High genetic diversity among fossorial lizard populations (Anniella pulchra) in a rapidly developing landscape (Central California). Conserv Genet 10: 169-176.
    • (2009) Conserv Genet , vol.10 , pp. 169-176
    • Parham, J.F.1    Papenfuss, T.J.2
  • 69
    • 2442715411 scopus 로고    scopus 로고
    • Crytic speciation, genetic diversity and gene flow in the California turret spider Atypoides riversi (Araneae: Antrodiaetidae)
    • Ramirez MG, Chi B, (2004) Crytic speciation, genetic diversity and gene flow in the California turret spider Atypoides riversi (Araneae: Antrodiaetidae). Biological Journal of the Linnean Society 82: 27-37.
    • (2004) Biological Journal of the Linnean Society , vol.82 , pp. 27-37
    • Ramirez, M.G.1    Chi, B.2
  • 70
    • 34547702658 scopus 로고    scopus 로고
    • Delimiting cohesion species: extreme population structure and the role of ecological interchangeability
    • Stockman AK, Bond JE, (2007) Delimiting cohesion species: extreme population structure and the role of ecological interchangeability. Molecular Ecology 16: 3374-3392.
    • (2007) Molecular Ecology , vol.16 , pp. 3374-3392
    • Stockman, A.K.1    Bond, J.E.2
  • 71
    • 63549118031 scopus 로고    scopus 로고
    • STEM: species tree estimation using maximum likelihood for gene trees under coalescence
    • Kubatko LS, Carstens BC, Knowles LL, (2009) STEM: species tree estimation using maximum likelihood for gene trees under coalescence. Bioinformatics 25: 971-973.
    • (2009) Bioinformatics , vol.25 , pp. 971-973
    • Kubatko, L.S.1    Carstens, B.C.2    Knowles, L.L.3
  • 72
    • 77952703002 scopus 로고    scopus 로고
    • Bayesian species delimitation using multilocus sequence data
    • Yang Z, Rannala B, (2010) Bayesian species delimitation using multilocus sequence data. Proc Natl Acad Sci U S A 107: 9264-9269.
    • (2010) Proc Natl Acad Sci U S A , vol.107 , pp. 9264-9269
    • Yang, Z.1    Rannala, B.2
  • 73
    • 3142714474 scopus 로고    scopus 로고
    • Multilocus methods for estimating population sizes, migration rates, and divergence time, with applications to the divergence of Drosophila pseudoobscura and D. persimilis
    • Hey J, Nielsen R, (2004) Multilocus methods for estimating population sizes, migration rates, and divergence time, with applications to the divergence of Drosophila pseudoobscura and D. persimilis. Genetics 167: 747-760.
    • (2004) Genetics , vol.167 , pp. 747-760
    • Hey, J.1    Nielsen, R.2
  • 74
    • 42449106611 scopus 로고    scopus 로고
    • Recent divergence with gene flow in Tennessee cave salamanders (Plethodontidae: Gyrinophilus) inferred from gene genealogies
    • Niemiller ML, Fitzpatrick BM, Miller BT, (2008) Recent divergence with gene flow in Tennessee cave salamanders (Plethodontidae: Gyrinophilus) inferred from gene genealogies. Molecular Ecology 17: 2258-2275.
    • (2008) Molecular Ecology , vol.17 , pp. 2258-2275
    • Niemiller, M.L.1    Fitzpatrick, B.M.2    Miller, B.T.3
  • 75
    • 20444367698 scopus 로고    scopus 로고
    • Testing species boundaries in the Antrodiaetus unicolor complex (Araneae: Mygalomorphae: Antrodiaetidae): "paraphyly" and cryptic diversity
    • Hendrixson BE, Bond JE, (2005) Testing species boundaries in the Antrodiaetus unicolor complex (Araneae: Mygalomorphae: Antrodiaetidae): "paraphyly" and cryptic diversity. Molecular Phylogenetics and Evolution 36: 405-416.
    • (2005) Molecular Phylogenetics and Evolution , vol.36 , pp. 405-416
    • Hendrixson, B.E.1    Bond, J.E.2
  • 76
    • 1642281351 scopus 로고    scopus 로고
    • Speciation and ecology revisited: Phylogenetic niche conservatism and the origin of species
    • Wiens JJ, (2004) Speciation and ecology revisited: Phylogenetic niche conservatism and the origin of species. Evolution 58: 193-197.
    • (2004) Evolution , vol.58 , pp. 193-197
    • Wiens, J.J.1
  • 77
    • 30344446365 scopus 로고    scopus 로고
    • Niche conservatism: Integrating evolution, ecology, and conservation biology
    • Wiens JJ, Graham CH, (2005) Niche conservatism: Integrating evolution, ecology, and conservation biology. Annu Rev Ecol Evol Syst 36: 519-539.
    • (2005) Annu Rev Ecol Evol Syst , vol.36 , pp. 519-539
    • Wiens, J.J.1    Graham, C.H.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.