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Volumn 2, Issue 5, 2011, Pages 395-409

Spliceosomal genes in the D. discoideum genome: A comparison with those in H. sapiens, D. melanogaster, A. thaliana and S. cerevisiae

Author keywords

comparative genomics; Dictyostelium discoideum; pre mRNA splicing; spliceosomal genes; splicing regulators

Indexed keywords

CUG BINDING PROTEIN; CYCLOPHILIN; GENE PRODUCT; HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN; NUCLEOTIDE BINDING PROTEIN; PRP19 COMPLEX PROTEIN; SERINE ARGININE RICH PROTEIN; SMALL NUCLEAR RIBONUCLEOPROTEIN; SMALL NUCLEAR RIBONUCLEOPROTEIN E; SPLICEOSOMAL PROTEIN; UNCLASSIFIED DRUG;

EID: 80053059314     PISSN: 1674800X     EISSN: 16748018     Source Type: Journal    
DOI: 10.1007/s13238-011-1052-z     Document Type: Article
Times cited : (6)

References (46)
  • 2
    • 4344560867 scopus 로고    scopus 로고
    • Novel non-coding RNAs in Dictyostelium discoideum and their expression during development
    • Aspegren, A., Hinas, A., Larsson, P., Larsson, A., and Söderbom, F. (2004). Novel non-coding RNAs in Dictyostelium discoideum and their expression during development. Nucleic Acids Res 32, 4646-4656.
    • (2004) Nucleic Acids Res , vol.32 , pp. 4646-4656
    • Aspegren, A.1    Hinas, A.2    Larsson, P.3    Larsson, A.4    Söderbom, F.5
  • 3
    • 0026033677 scopus 로고
    • Isolation and characterization of cDNA clones encoding polypeptides related to a Dictyostelium discoideum cyclic AMP binding protein
    • Bain, G., Grant, C. E., and Tsang, A. (1991). Isolation and characterization of cDNA clones encoding polypeptides related to a Dictyostelium discoideum cyclic AMP binding protein. J Gen Microbiol 137, 501-508.
    • (1991) J Gen Microbiol , vol.137 , pp. 501-508
    • Bain, G.1    Grant, C.E.2    Tsang, A.3
  • 4
    • 0034602344 scopus 로고    scopus 로고
    • A kingdom-level phylogeny of eukaryotes based on combined protein data
    • Baldauf, S. L., Roger, A. J., Wenk-Siefert, I., and Doolittle, W. F. (2000). A kingdom-level phylogeny of eukaryotes based on combined protein data. Science 290, 972-977.
    • (2000) Science , vol.290 , pp. 972-977
    • Baldauf, S.L.1    Roger, A.J.2    Wenk-Siefert, I.3    Doolittle, W.F.4
  • 5
    • 30044435456 scopus 로고    scopus 로고
    • Systematic genome-wide annotation of spliceosomal proteins reveals differential gene family expansion
    • Barbosa-Morais, N. L., Carmo-Fonseca, M., and Aparício, S. (2006). Systematic genome-wide annotation of spliceosomal proteins reveals differential gene family expansion. Genome Res 16, 66-77.
    • (2006) Genome Res , vol.16 , pp. 66-77
    • Barbosa-Morais, N.L.1    Carmo-Fonseca, M.2    Aparício, S.3
  • 6
    • 42249093677 scopus 로고    scopus 로고
    • Isolation of an active step I spliceosome and composition of its RNP core
    • Bessonov, S., Anokhina, M., Will, C. L., Urlaub, H., and Lührmann, R. (2008). Isolation of an active step I spliceosome and composition of its RNP core. Nature 452, 846-850.
    • (2008) Nature , vol.452 , pp. 846-850
    • Bessonov, S.1    Anokhina, M.2    Will, C.L.3    Urlaub, H.4    Lührmann, R.5
  • 7
    • 0013394889 scopus 로고    scopus 로고
    • Mechanisms of alternative pre-messenger RNA splicing
    • Black, D. L. (2003). Mechanisms of alternative pre-messenger RNA splicing. Annu Rev Biochem 72, 291-336.
    • (2003) Annu Rev Biochem , vol.72 , pp. 291-336
    • Black, D.L.1
  • 8
    • 0034161419 scopus 로고    scopus 로고
    • Exonic splicing enhancers: mechanism of action, diversity and role in human genetic diseases
    • Blencowe, B. J. (2000). Exonic splicing enhancers: mechanism of action, diversity and role in human genetic diseases. Trends Biochem Sci 25, 106-110.
    • (2000) Trends Biochem Sci , vol.25 , pp. 106-110
    • Blencowe, B.J.1
  • 9
    • 79955041258 scopus 로고    scopus 로고
    • Networking in a global world: Establishing functional connections between neural splicing regulators and their target transcripts
    • Calarco, J. A., Zhen, M., and Blencowe, B. J. (2011). Networking in a global world: Establishing functional connections between neural splicing regulators and their target transcripts. RNA 17, 775-791.
    • (2011) Rna , vol.17 , pp. 775-791
    • Calarco, J.A.1    Zhen, M.2    Blencowe, B.J.3
  • 10
    • 0036207384 scopus 로고    scopus 로고
    • Listening to silence and understanding nonsense: exonic mutations that affect splicing
    • Cartegni, L., Chew, S. L., and Krainer, A. R. (2002). Listening to silence and understanding nonsense: exonic mutations that affect splicing. Nat Rev Genet 3, 285-298.
    • (2002) Nat Rev Genet , vol.3 , pp. 285-298
    • Cartegni, L.1    Chew, S.L.2    Krainer, A.R.3
  • 12
    • 16344385067 scopus 로고    scopus 로고
    • Complex spliceosomal organization ancestral to extant eukaryotes
    • Collins, L., and Penny, D. (2005). Complex spliceosomal organization ancestral to extant eukaryotes. Mol Biol Evol 22, 1053-1066.
    • (2005) Mol Biol Evol , vol.22 , pp. 1053-1066
    • Collins, L.1    Penny, D.2
  • 13
    • 33344473656 scopus 로고    scopus 로고
    • The DEAD-box protein family of RNA helicases
    • Cordin, O., Banroques, J., Tanner, N. K., and Linder, P. (2006). The DEAD-box protein family of RNA helicases. Gene 367, 17-37.
    • (2006) Gene , vol.367 , pp. 17-37
    • Cordin, O.1    Banroques, J.2    Tanner, N.K.3    Linder, P.4
  • 15
    • 0346373752 scopus 로고    scopus 로고
    • RNA leaching of transcription factors disrupts transcription in myotonic dystrophy
    • Ebralidze, A., Wang, Y., Petkova, V., Ebralidse, K., and Junghans, R. P. (2004). RNA leaching of transcription factors disrupts transcription in myotonic dystrophy. Science 303, 383-387.
    • (2004) Science , vol.303 , pp. 383-387
    • Ebralidze, A.1    Wang, Y.2    Petkova, V.3    Ebralidse, K.4    Junghans, R.P.5
  • 17
    • 0346433692 scopus 로고    scopus 로고
    • Dictyostelium discoideum developmentally regulated genes whose expression is dependent on MADS box transcription factor SrfA
    • Escalante, R., Moreno, N., and Sastre, L. (2003). Dictyostelium discoideum developmentally regulated genes whose expression is dependent on MADS box transcription factor SrfA. Eukaryot Cell 2, 1327-1335.
    • (2003) Eukaryot Cell , vol.2 , pp. 1327-1335
    • Escalante, R.1    Moreno, N.2    Sastre, L.3
  • 18
    • 57349185582 scopus 로고    scopus 로고
    • Up-regulation of the proapoptotic caspase 2 splicing isoform by a candidate tumor suppressor, RBM 5
    • Fushimi, K., Ray, P., Kar, A., Wang, L., Sutherland, L. C., and Wu, J. Y., (2008). Up-regulation of the proapoptotic caspase 2 splicing isoform by a candidate tumor suppressor, RBM 5. Proc Natl Acad Sci USA 105, 15708-15713.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 15708-15713
    • Fushimi, K.1    Ray, P.2    Kar, A.3    Wang, L.4    Sutherland, L.C.5    Wu, J.Y.6
  • 19
    • 0025681758 scopus 로고
    • Cloning and characterization of cDNAs encoding a novel cyclic AMP-binding protein in Dictyostelium discoideum
    • Grant, C. E., and Tsang, A. (1990). Cloning and characterization of cDNAs encoding a novel cyclic AMP-binding protein in Dictyostelium discoideum. Gene 96, 213-218.
    • (1990) Gene , vol.96 , pp. 213-218
    • Grant, C.E.1    Tsang, A.2
  • 20
    • 0026080729 scopus 로고
    • Sequence and expression of annexin VII of Dictyostelium discoideum
    • Greenwood, M., and Tsang, A. (1991). Sequence and expression of annexin VII of Dictyostelium discoideum. Biochim Biophys Acta 1088, 429-432.
    • (1991) Biochim Biophys Acta , vol.1088 , pp. 429-432
    • Greenwood, M.1    Tsang, A.2
  • 22
    • 33745153118 scopus 로고    scopus 로고
    • Identification of the major spliceosomal RNAs in Dictyostelium discoideum reveals developmentally regulated U2 variants and polyadenylated snRNAs
    • Hinas, A., Larsson, P., Avesson, L., Kirsebom, L. A., Virtanen, A., and Söderbom, F. (2006). Identification of the major spliceosomal RNAs in Dictyostelium discoideum reveals developmentally regulated U2 variants and polyadenylated snRNAs. Eukaryot Cell 5, 924-934.
    • (2006) Eukaryot Cell , vol.5 , pp. 924-934
    • Hinas, A.1    Larsson, P.2    Avesson, L.3    Kirsebom, L.A.4    Virtanen, A.5    Söderbom, F.6
  • 25
    • 79955379829 scopus 로고    scopus 로고
    • RNA helicase p68 (DDX5) regulates tau exon 10 splicing by modulating a stem-loop structure at the 5′ splice site
    • Kar, A., Fushimi, K., Zhou, X., Ray, P., Shi, C., Chen, X., Liu, Z., Chen, S., and Wu., J. Y., (2011). RNA helicase p68 (DDX5) regulates tau exon 10 splicing by modulating a stem-loop structure at the 5′ splice site. Mol Cell Biol 31, 1812-1821.
    • (2011) Mol Cell Biol , vol.31 , pp. 1812-1821
    • Kar, A.1    Fushimi, K.2    Zhou, X.3    Ray, P.4    Shi, C.5    Chen, X.6    Liu, Z.7    Chen, S.8    Wu, J.Y.9
  • 26
    • 0035146628 scopus 로고    scopus 로고
    • The CELF family of RNA binding proteins is implicated in cell-specific and developmentally regulated alternative splicing
    • Ladd, A. N., Charlet, N., and Cooper, T. A. (2001). The CELF family of RNA binding proteins is implicated in cell-specific and developmentally regulated alternative splicing. Mol Cell Biol 21, 1285-1296.
    • (2001) Mol Cell Biol , vol.21 , pp. 1285-1296
    • Ladd, A.N.1    Charlet, N.2    Cooper, T.A.3
  • 28
    • 19344366251 scopus 로고    scopus 로고
    • Mechanistic links between nonsense-mediated mRNA decay and pre-mRNA splicing in mammalian cells
    • Lejeune, F., and Maquat, L. E. (2005). Mechanistic links between nonsense-mediated mRNA decay and pre-mRNA splicing in mammalian cells. Curr Opin Cell Biol 17, 309-315.
    • (2005) Curr Opin Cell Biol , vol.17 , pp. 309-315
    • Lejeune, F.1    Maquat, L.E.2
  • 29
    • 42449159377 scopus 로고    scopus 로고
    • SR proteins and related factors in alternative splicing
    • Lin, S., and Fu, X. D. (2007). SR proteins and related factors in alternative splicing. Adv Exp Med Biol 623, 107-122.
    • (2007) Adv Exp Med Biol , vol.623 , pp. 107-122
    • Lin, S.1    Fu, X.D.2
  • 30
    • 42449158952 scopus 로고    scopus 로고
    • Spliceosome assembly and composition
    • Matlin, A. J., and Moore, M. J. (2007). Spliceosome assembly and composition. Adv Exp Med Biol 623, 14-35.
    • (2007) Adv Exp Med Biol , vol.623 , pp. 14-35
    • Matlin, A.J.1    Moore, M.J.2
  • 31
    • 38649125206 scopus 로고    scopus 로고
    • Global analysis of mRNA splicing
    • Moore, M. J., and Silver, P. A., (2008). Global analysis of mRNA splicing. RNA 14, 197-203.
    • (2008) Rna , vol.14 , pp. 197-203
    • Moore, M.J.1    Silver, P.A.2
  • 33
    • 75849145292 scopus 로고    scopus 로고
    • Expansion of the eukaryotic proteome by alternative splicing
    • Nilsen, T. W., and Graveley, B. R. (2010). Expansion of the eukaryotic proteome by alternative splicing. Nature 463, 457-463.
    • (2010) Nature , vol.463 , pp. 457-463
    • Nilsen, T.W.1    Graveley, B.R.2
  • 34
    • 0042357381 scopus 로고    scopus 로고
    • Progress toward understanding the genetic and biochemical mechanisms of inherited photoreceptor degenerations
    • Pacione, L. R., Szego, M. J., Ikeda, S., Nishina, P. M., and McInnes, R. R. (2003). Progress toward understanding the genetic and biochemical mechanisms of inherited photoreceptor degenerations. Annu Rev Neurosci 26, 657-700.
    • (2003) Annu Rev Neurosci , vol.26 , pp. 657-700
    • Pacione, L.R.1    Szego, M.J.2    Ikeda, S.3    Nishina, P.M.4    McInnes, R.R.5
  • 35
    • 54049083387 scopus 로고    scopus 로고
    • Visualizing phylogenetic trees using TreeView
    • Chapter 6, Unit 62
    • Page, R. D. (2002). Visualizing phylogenetic trees using TreeView. Curr Protoc Bioinformatics, Chapter 6, Unit 62.
    • (2002) Curr Protoc Bioinformatics
    • Page, R.D.1
  • 36
    • 0345169036 scopus 로고    scopus 로고
    • Splicing double: insights from the second spliceosome
    • Patel, A. A., and Steitz, J. A. (2003). Splicing double: insights from the second spliceosome. Nat Rev Mol Cell Biol 4, 960-970.
    • (2003) Nat Rev Mol Cell Biol , vol.4 , pp. 960-970
    • Patel, A.A.1    Steitz, J.A.2
  • 38
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist, F., and Huelsenbeck, J. P. (2003). MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19, 1572-1574.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 39
    • 21044438900 scopus 로고    scopus 로고
    • Multiple roles of arginine/serine-rich splicing factors in RNA processing
    • Sanford, J. R., Ellis, J., and Cáceres, J. F. (2005). Multiple roles of arginine/serine-rich splicing factors in RNA processing. Biochem Soc Trans 33, 443-446.
    • (2005) Biochem Soc Trans , vol.33 , pp. 443-446
    • Sanford, J.R.1    Ellis, J.2    Cáceres, J.F.3
  • 40
    • 0032489021 scopus 로고    scopus 로고
    • Mechanical devices of the spliceosome: motors, clocks, springs, and things
    • Staley, J. P., and Guthrie, C. (1998). Mechanical devices of the spliceosome: motors, clocks, springs, and things. Cell 92, 315-326.
    • (1998) Cell , vol.92 , pp. 315-326
    • Staley, J.P.1    Guthrie, C.2
  • 41
    • 2342540912 scopus 로고    scopus 로고
    • The ever-increasing complexities of the exon junction complex
    • Tange, T. O., Nott, A., and Moore, M. J. (2004). The ever-increasing complexities of the exon junction complex. Curr Opin Cell Biol 16, 279-284.
    • (2004) Curr Opin Cell Biol , vol.16 , pp. 279-284
    • Tange, T.O.1    Nott, A.2    Moore, M.J.3
  • 42
    • 34548758543 scopus 로고    scopus 로고
    • Splicing in disease: disruption of the splicing code and the decoding machinery
    • Wang, G. S., and Cooper, T. A. (2007). Splicing in disease: disruption of the splicing code and the decoding machinery. Nat Rev Genet 8, 749-761.
    • (2007) Nat Rev Genet , vol.8 , pp. 749-761
    • Wang, G.S.1    Cooper, T.A.2
  • 43
    • 26844431946 scopus 로고    scopus 로고
    • Splicing of a rare class of introns by the U12-dependent spliceosome
    • Will, C. L., and Lührmann, R. (2005). Splicing of a rare class of introns by the U12-dependent spliceosome. Biol Chem 386, 713-724.
    • (2005) Biol Chem , vol.386 , pp. 713-724
    • Will, C.L.1    Lührmann, R.2
  • 45
    • 33748660487 scopus 로고    scopus 로고
    • SRp54 (SFRS11), a regulator for tau exon 10 alternative splicing identified by an expression cloning strategy
    • Wu, J. Y., Kar, A., Kuo, D., Yu, B., and Havlioglu, N. (2006). SRp54 (SFRS11), a regulator for tau exon 10 alternative splicing identified by an expression cloning strategy. Mol Cell Biol 26, 6739-6747.
    • (2006) Mol Cell Biol , vol.26 , pp. 6739-6747
    • Wu, J.Y.1    Kar, A.2    Kuo, D.3    Yu, B.4    Havlioglu, N.5
  • 46
    • 0037068447 scopus 로고    scopus 로고
    • Comprehensive proteomic analysis of the human spliceosome
    • Zhou, Z., Licklider, L. J., Gygi, S. P., and Reed, R. (2002). Comprehensive proteomic analysis of the human spliceosome. Nature 419, 182-185.
    • (2002) Nature , vol.419 , pp. 182-185
    • Zhou, Z.1    Licklider, L.J.2    Gygi, S.P.3    Reed, R.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.