메뉴 건너뛰기




Volumn 366, Issue 1580, 2011, Pages 2972-2978

A vestige of a prebiotic bonding machine is functioning within the contemporary ribosome

Author keywords

Peptide bond formation; Proto ribosome; Ribosomal symmetrical region; RNA world

Indexed keywords

CHEMICAL BONDING; MOLECULAR ANALYSIS; PROTEIN; SUBSTRATE;

EID: 80052946906     PISSN: 09628436     EISSN: 14712970     Source Type: Journal    
DOI: 10.1098/rstb.2011.0146     Document Type: Article
Times cited : (48)

References (33)
  • 1
    • 0034637111 scopus 로고    scopus 로고
    • The complete atomic structure of the large ribosomal subunit at 2.4 Å resolution
    • (doi:10.1126/science.289.5481.905)
    • Ban, N., Nissen, P., Hansen, J., Moore, P. B. & Steitz, T. A. 2000 The complete atomic structure of the large ribosomal subunit at 2.4 Å resolution. Science 289, 905-920. (doi:10.1126/science.289.5481.905)
    • (2000) Science , vol.289 , pp. 905-920
    • Ban, N.1    Nissen, P.2    Hansen, J.3    Moore, P.B.4    Steitz, T.A.5
  • 2
    • 0034268836 scopus 로고    scopus 로고
    • Structure of functionally activated small ribosomal subunit at 3.3 Å resolution
    • (doi:10.1016/S0092-8674(00)00084-2)
    • Schluenzen, F. et al. 2000 Structure of functionally activated small ribosomal subunit at 3.3 Å resolution. Cell 102, 615-623. (doi:10.1016/S0092-8674(00)00084-2)
    • (2000) Cell , vol.102 , pp. 615-623
    • Schluenzen, F.1
  • 4
    • 0035977093 scopus 로고    scopus 로고
    • High resolution structure of the large ribosomal subunit from a mesophilic eubacterium
    • (doi:10.1016/S0092-8674(01)00546-3)
    • Harms, J., Schluenzen, F., Zarivach, R., Bashan, A., Gat, S., Agmon, I., Bartels, H., Franceschi, F. & Yonath, A. 2001 High resolution structure of the large ribosomal subunit from a mesophilic eubacterium. Cell 107, 679-688. (doi:10.1016/S0092-8674(01)00546-3)
    • (2001) Cell , vol.107 , pp. 679-688
    • Harms, J.1    Schluenzen, F.2    Zarivach, R.3    Bashan, A.4    Gat, S.5    Agmon, I.6    Bartels, H.7    Franceschi, F.8    Yonath, A.9
  • 6
    • 33748582906 scopus 로고    scopus 로고
    • Crystal structure of a 70S ribosome-tRNA complex reveals functional interactions and rearrangements
    • (doi:10.1016/j.cell.2006.08.032)
    • Korostelev, A., Trakhanov, S., Laurberg, M. & Noller, H. F. 2006 Crystal structure of a 70S ribosome-tRNA complex reveals functional interactions and rearrangements. Cell 126, 1065-1077. (doi:10.1016/j.cell.2006.08.032)
    • (2006) Cell , vol.126 , pp. 1065-1077
    • Korostelev, A.1    Trakhanov, S.2    Laurberg, M.3    Noller, H.F.4
  • 7
    • 33749354360 scopus 로고    scopus 로고
    • Structure of the 70S ribosome complexed with mRNA and tRNA
    • (doi:10.1126/science.1131127)
    • Selmer, M., Dunham, C. M., Murphy IV, F. V., Weixlbaumer, A., Petry, S., Kelley, A. C., Weir, J. R. & Ramakrishnan, V. 2006 Structure of the 70S ribosome complexed with mRNA and tRNA. Science 313, 1935-1942. (doi:10.1126/science.1131127)
    • (2006) Science , vol.313 , pp. 1935-1942
    • Selmer, M.1    Dunham, C.M.2    Murphy, I.V.3
  • 8
    • 78649426085 scopus 로고    scopus 로고
    • Crystal structure of the eukaryotic ribosome
    • (doi:10.1126/science.1194294)
    • Ben-Shem, A., Jenner, L., Yusupova, G. & Yusupov, M. 2010 Crystal structure of the eukaryotic ribosome. Science 330, 1203-1209. (doi:10.1126/science.1194294)
    • (2010) Science , vol.330 , pp. 1203-1209
    • Ben-Shem, A.1    Jenner, L.2    Yusupova, G.3    Yusupov, M.4
  • 9
    • 0037159243 scopus 로고    scopus 로고
    • Coupling of GTP hydrolysis by elongation factor G to translocation and factor recycling on the ribosome
    • (doi:10.1021/bi0264871)
    • Katunin, V. I., Savelsbergh, A., Rodnina, M. V. & Wintermeyer, W. 2002 Coupling of GTP hydrolysis by elongation factor G to translocation and factor recycling on the ribosome. Biochemistry 41, 12806-12812. (doi:10.1021/bi0264871)
    • (2002) Biochemistry , vol.41 , pp. 12806-12812
    • Katunin, V.I.1    Savelsbergh, A.2    Rodnina, M.V.3    Wintermeyer, W.4
  • 10
    • 0037249473 scopus 로고    scopus 로고
    • Structural basis of the ribosomal machinery for peptide bond formation, translocation, and nascent chain progression
    • (doi:10.1016/S1097-2765(03)00009-1)
    • Bashan, A. et al. 2003 Structural basis of the ribosomal machinery for peptide bond formation, translocation, and nascent chain progression. Mol. Cell 11, 91-102. (doi:10.1016/S1097-2765(03)00009-1)
    • (2003) Mol. Cell , vol.11 , pp. 91-102
    • Bashan, A.1
  • 11
    • 26844561217 scopus 로고    scopus 로고
    • Symmetry at the active site of the ribosome: Structural and functional implications
    • (doi:10.1515/BC.2005.098)
    • Agmon, I., Bashan, A., Zarivach, R. & Yonath, A. 2005 Symmetry at the active site of the ribosome: structural and functional implications. Biol. Chem. 386, 833-844. (doi:10.1515/BC.2005.098)
    • (2005) Biol. Chem. , vol.386 , pp. 833-844
    • Agmon, I.1    Bashan, A.2    Zarivach, R.3    Yonath, A.4
  • 12
    • 0141953259 scopus 로고    scopus 로고
    • Structure of the mammalian mitochondrial ribosome reveals an expanded functional role for its component proteins
    • (doi:10.1016/S0092-8674(03)00762-1)
    • Sharma, M. R., Koc, E. C., Datta, P. P., Booth, T. M., Spremulli, L. L. & Agrawal, R. K. 2003 Structure of the mammalian mitochondrial ribosome reveals an expanded functional role for its component proteins. Cell 115, 97-108. (doi:10.1016/S0092-8674(03)00762-1)
    • (2003) Cell , vol.115 , pp. 97-108
    • Sharma, M.R.1    Koc, E.C.2    Datta, P.P.3    Booth, T.M.4    Spremulli, L.L.5    Agrawal, R.K.6
  • 13
    • 35548998339 scopus 로고    scopus 로고
    • On ribosome conservation and evolution
    • (doi:10.1560/IJEE_52_3-4_359)
    • Agmon, I., Bashan, A. & Yonath, A. 2006 On ribosome conservation and evolution. Isr. J. Ecol. Evol. 52, 359-379. (doi:10.1560/IJEE_52_3-4_359)
    • (2006) Isr. J. Ecol. Evol. , vol.52 , pp. 359-379
    • Agmon, I.1    Bashan, A.2    Yonath, A.3
  • 14
    • 70349988824 scopus 로고    scopus 로고
    • The evolving ribosome: From non-coded peptide bond formation to sophisticated translation machinery
    • (doi:10.1016/j.resmic.2009.07.004)
    • Davidovich, C., Belousoff, M., Bashan, A. & Yonath, A. 2009 The evolving ribosome: from non-coded peptide bond formation to sophisticated translation machinery. Res. Microbiol. 160, 487-492. (doi:10.1016/j.resmic.2009.07.004)
    • (2009) Res. Microbiol. , vol.160 , pp. 487-492
    • Davidovich, C.1    Belousoff, M.2    Bashan, A.3    Yonath, A.4
  • 17
    • 77953271371 scopus 로고    scopus 로고
    • Ancient machinery embedded in the contemporary ribosome
    • (doi:10.1042/BST0380422)
    • Belousoff, M. J. et al. 2010 Ancient machinery embedded in the contemporary ribosome. Biochem. Soc. Trans. 38, 422-427. (doi:10.1042/BST0380422)
    • (2010) Biochem. Soc. Trans. , vol.38 , pp. 422-427
    • Belousoff, M.J.1
  • 18
    • 33748621490 scopus 로고    scopus 로고
    • The transition state for formation of the peptide bond in the ribosome
    • (doi:10.1073/ pnas.0606027103)
    • Gindulyte, A., Bashan, A., Agmon, I., Massa, L., Yonath, A. & Karle, J. 2006 The transition state for formation of the peptide bond in the ribosome. Proc. Natl Acad. Sci. USA 103, 13327-13332. (doi:10.1073/ pnas.0606027103)
    • (2006) Proc. Natl Acad. Sci. USA. , vol.103 , pp. 13327-13332
    • Gindulyte, A.1    Bashan, A.2    Agmon, I.3    Massa, L.4    Yonath, A.5    Karle, J.6
  • 19
    • 33750359363 scopus 로고    scopus 로고
    • Comprehensive genetic selection revealed essential bases in the peptidyl-transferase center
    • (doi:10.1073/pnas.0605970103)
    • Sato, N. S., Hirabayashi, N., Agmon, I., Yonath, A. & Suzuki, T. 2006 Comprehensive genetic selection revealed essential bases in the peptidyl-transferase center. Proc. Natl Acad. Sci. USA 103, 15386-15391. (doi:10.1073/pnas.0605970103)
    • (2006) Proc. Natl Acad. Sci. USA. , vol.103 , pp. 15386-15391
    • Sato, N.S.1    Hirabayashi, N.2    Agmon, I.3    Yonath, A.4    Suzuki, T.5
  • 20
    • 33646568156 scopus 로고    scopus 로고
    • Participation of the tRNA A76 hydroxyl groups throughout translation
    • (doi:10.1021/bi060183n)
    • Weinger, J. S. & Strobel, S. A. 2006 Participation of the tRNA A76 hydroxyl groups throughout translation. Biochemistry 45, 5939-5948. (doi:10.1021/bi060183n)
    • (2006) Biochemistry , vol.45 , pp. 5939-5948
    • Weinger, J.S.1    Strobel, S.A.2
  • 21
    • 66149108671 scopus 로고    scopus 로고
    • Synthesis of activated pyrimidine ribonucleotides in prebiotically plausible conditions
    • (doi:10.1038/nature08013)
    • Powner, M. W., Gerland, B. & Sutherland, J. D. 2009 Synthesis of activated pyrimidine ribonucleotides in prebiotically plausible conditions. Nature 459, 239-242. (doi:10.1038/nature08013)
    • (2009) Nature , vol.459 , pp. 239-242
    • Powner, M.W.1    Gerland, B.2    Sutherland, J.D.3
  • 22
    • 61349146305 scopus 로고    scopus 로고
    • Nonenzymatic RNA ligation in water
    • (doi:10.1074/jbc.M805333200)
    • Pino, S., Ciciriello, F., Costanzo,G. & Di Mauro, E. 2008 Nonenzymatic RNA ligation in water. J. Biol. Chem. 283, 36494-36503. (doi:10.1074/jbc.M805333200)
    • (2008) J. Biol. Chem. , vol.283 , pp. 36494-36503
    • Pino, S.1    Ciciriello, F.2    Costanzo, G.3    di Mauro, E.4
  • 23
    • 70450240734 scopus 로고    scopus 로고
    • Generation of long RNA chains in water
    • (doi:10.1074/jbc.M109.041905)
    • Costanzo, G., Pino, S., Ciciriello, F. & Di Mauro, E. 2009 Generation of long RNA chains in water. J. Biol. Chem. 284, 33206-33216. (doi:10.1074/jbc.M109.041905)
    • (2009) J. Biol. Chem. , vol.284 , pp. 33206-33216
    • Costanzo, G.1    Pino, S.2    Ciciriello, F.3    Di Mauro, E.4
  • 24
    • 61349193830 scopus 로고    scopus 로고
    • Self-sustained replication of an RNA enzyme
    • (doi:10.1126/science.1167856)
    • Lincoln, T. A. & Joyce, G. F. 2009 Self-sustained replication of an RNA enzyme. Science 323, 1229-1232. (doi:10.1126/science.1167856)
    • (2009) Science , vol.323 , pp. 1229-1232
    • Lincoln, T.A.1    Joyce, G.F.2
  • 25
    • 79953809654 scopus 로고    scopus 로고
    • Ribozyme-catalyzed transcription of an active ribozyme
    • (doi:10.1126/science.1200752)
    • Wochner, A., Attwater, J., Coulson, A. & Holliger, P. 2011 Ribozyme-catalyzed transcription of an active ribozyme. Science 332, 209-211. (doi:10.1126/science.1200752)
    • (2011) Science , vol.332 , pp. 209-211
    • Wochner, A.1    Attwater, J.2    Coulson, A.3    Holliger, P.4
  • 26
    • 0028969534 scopus 로고
    • Aminoacyl-RNA synthesis catalyzed by an RNA
    • (doi:10.1126/science.7530860)
    • Illangasekare, M., Sanchez, G., Nickles, T. & Yarus, M. 1995 Aminoacyl-RNA synthesis catalyzed by an RNA. Science 267, 643-647. (doi:10.1126/science.7530860)
    • (1995) Science , vol.267 , pp. 643-647
    • Illangasekare, M.1    Sanchez, G.2    Nickles, T.3    Yarus, M.4
  • 27
    • 33745189609 scopus 로고    scopus 로고
    • Charging of tRNA with non-natural amino acids at high pressure
    • (doi:10.1111/j.1742-4658.2006.05312.x)
    • Giel-Pietraszuk, M. & Barciszewski, J. 2006 Charging of tRNA with non-natural amino acids at high pressure. FEBS J. 273, 3014-3023. (doi:10.1111/j.1742-4658.2006.05312.x)
    • (2006) FEBS J , vol.273 , pp. 3014-3023
    • Giel-Pietraszuk, M.1    Barciszewski, J.2
  • 28
    • 34447521715 scopus 로고    scopus 로고
    • Efficiency of a self-aminoacylating ribozyme: Effect of the length and base-composition of its 3' extension
    • (doi:10.1261/rna.500907)
    • Lehmann, J., Reichel, A., Buguin, A. & Libchaber, A. 2007 Efficiency of a self-aminoacylating ribozyme: effect of the length and base-composition of its 3' extension. RNA 13, 1191-1197. (doi:10.1261/rna.500907)
    • (2007) RNA , vol.13 , pp. 1191-1197
    • Lehmann, J.1    Reichel, A.2    Buguin, A.3    Libchaber, A.4
  • 29
    • 77949497062 scopus 로고    scopus 로고
    • Multiple translational products from a five-nucleotide ribozyme
    • (doi:10.1073/pnas.0912895107)
    • Turk, R. M., Chumachenko, N. V. & Yarus, M. 2010 Multiple translational products from a five-nucleotide ribozyme. Proc. Natl Acad. Sci. USA 107, 4585-4589. (doi:10.1073/pnas.0912895107)
    • (2010) Proc. Natl Acad. Sci. USA. , vol.107 , pp. 4585-4589
    • Turk, R.M.1    Chumachenko, N.V.2    Yarus, M.3
  • 30
    • 79957881556 scopus 로고    scopus 로고
    • On the emergence of pre-genetic information
    • Di Mauro, E. 2010 On the emergence of pre-genetic information. J. Cosmol. 10, 3381-3387.
    • (2010) J. Cosmol. , vol.10 , pp. 3381-3387
    • Di Mauro, E.1
  • 31
    • 60549112849 scopus 로고    scopus 로고
    • A hierarchical model for evolution of 23S ribosomal RNA
    • (doi:10.1038/nature07749)
    • Bokov, K. & Steinberg, S. V. 2009 A hierarchical model for evolution of 23S ribosomal RNA. Nature 457, 977-980. (doi:10.1038/nature07749)
    • (2009) Nature , vol.457 , pp. 977-980
    • Bokov, K.1    Steinberg, S.V.2
  • 32
    • 73349114907 scopus 로고    scopus 로고
    • Peeling the onion: Ribosomes are ancient molecular fossils
    • (doi:10.1093/ molbev/msp163)
    • Hsiao, C., Mohan, S., Kalahar, B. K. & Williams, L. D. 2009 Peeling the onion: ribosomes are ancient molecular fossils. Mol. Biol. Evol. 26, 2415-2425. (doi:10.1093/ molbev/msp163)
    • (2009) Mol. Biol. Evol. , vol.26 , pp. 2415-2425
    • Hsiao, C.1    Mohan, S.2    Kalahar, B.K.3    Williams, L.D.4
  • 33
    • 78149403030 scopus 로고    scopus 로고
    • Origin and evolution of the ribosome
    • (doi:10.1101/ cshperspect.a003483)
    • Fox, G. 2010 Origin and evolution of the ribosome. Cold Spring Harb. Perspect Biol. 2, a003483. (doi:10.1101/ cshperspect.a003483)
    • (2010) Cold Spring Harb. Perspect Biol. , vol.2
    • Fox, G.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.