Charging of tRNA with non-natural amino acids at high pressure

FEBS Journal

Volumn 273, Issue 13, 2006, Pages 3014-3023

  Giel Pietraszuk, Malgorzata ^a   Barciszewski, Jan ^a  

^a INSTITUTE OF BIOORGANIC CHEMISTRY   (Poland)

Author keywords

High pressure; Non natural amino acids; tRNA charging

Indexed keywords

AMINO ACID DERIVATIVE; HYDROXYL GROUP; RIBOSE; TRANSFER RNA;

AMINOACYLATION; ARTICLE; CHEMICAL PROCEDURES; CHEMICAL REACTION; PRESSURE; PRIORITY JOURNAL; PROTEIN ENGINEERING; RELIABILITY;

AMINO ACIDS; BIOCHEMISTRY; CHROMATOGRAPHY, HIGH PRESSURE LIQUID; CHROMATOGRAPHY, THIN LAYER; CODON; ESCHERICHIA COLI; FUNGI; MASS SPECTROMETRY; MODELS, CHEMICAL; PRESSURE; PROTEIN ENGINEERING; RNA, TRANSFER; TIME FACTORS; TRANSFER RNA AMINOACYLATION;

EID: 33745189609     PISSN: 1742464X     EISSN: 17424658     Source Type: Journal    
DOI: 10.1111/j.1742-4658.2006.05312.x     Document Type: Article

References (44)

1. Hendrickson TL Crecy-Lagard V Schimmel P ( 2004) Incorporation of non-natural amino acids into proteins. Annu Rev Biochem 73, 147 176.
2. Abdel-Rahman HM Al-Karamany GS El-Koussi NA Youssef AF Kiso Y ( 2002) HIV protease inhibitors: peptidomimetic drugs and future perspectives. Curr Med Chem 9, 1905 1922.
3. Kiso Y Matsumoto H Mizumoto S Kimura T Fujiwara Y Akaji K ( 1999) Small dipeptide-based HIV protease inhibitors containing the hydroxymethylcarbonyl isoster as an ideal transition-state mimic. Biopolymers 51, 51 58.
4. Budisa N Minks C Medrano FJ Lutz J Huber R Moroder L ( 1998) Residue-specific bioincorporation of non-natural, biologically active amino acids into proteins as possible drug carriers: structure and stability of the per-thiaproline mutant of annexin V. Proc Nat Acad Sc USA 95, 455 459.
5. Tang Y Ghirlanda G Vaidehi N Kua J Mainz DT Goddard WA III., DeGrado WF Tirrell DA ( 2001) Stabilization of coiled-coil peptide domains by introduction of trifluoroleucine. Biochemistry 40, 2790 2796.
6. Rothschild KJ Gite S ( 1999) tRNA-mediated protein engineering. Cur Opin Biotech 10, 64 70.
7. Krieg UC Walter P Johnson AE ( 1986) Photocrosslinking of the signal sequence of nascent preprolactin to the 54-kilodalton polypeptide of the signal recognition particle. Proc Natl Acad Sci USA 83, 8604 8608.
8. Krieg UC Johnson AE Walter P ( 1989) Protein translocation across the endoplasmic reticulum membrane: identification by photocross-linking of a 39-kD integral membrane glycoprotein as part of a putative translocation tunnel. J Cell Biol 109, 2033 2043.
9. Thrift RN Andrews DW Walter P Johnson AE ( 1991) A nascent membrane protein is located adjacent to ER membrane proteins throughout its integration and translation. J Cell Biol 112, 809 821.
10. Dawson PE Muir TW Clark-Lewis I Kent SB ( 1994) Synthesis of proteins by native chemical ligation. Science 266, 776 779.
11. Noren CJ Anthony-Cahill SJ Griffith MC Schultz PG ( 1989) A general method for site-specific incorporation of unnatural amino acids into proteins. Science 244, 182 188.
12. Anthony-Cahill SJ Griffith MC Noren CJ Suich DJ Schultz PG ( 1989) Site-specific mutagenesis with unnatural amino acids. Trends Biochem Sci 14, 400 403.
13. Heckler TG Chang LH Zama Y Naka T Chorghade MS Hecht SM ( 1984) T4 RNA ligase mediated preparation of novel 'chemically misacylated' tRNAPheS. Biochemistry 23, 1468 1473.
14. Resto E Iida A Van Cleve MD Hecht SM ( 1992) Amplification of protein expression in a cell free system. Nucleic Acids Res 20, 5979 5983.
15. Hagen MD Scalfi-Happ C Happ E Chladek S ( 1987) New methodology for the synthesis of 2′(3′)-O-aminoacyl oligoribonucleotides related to the 3′-terminus of aa-tRNA. Nucleic Acids Symp Series 18, 285 288.
16. Lohse PA Szostak JW ( 1996) Ribozyme-catalysed amino-acid transfer reactions. Nature 381, 442 444.
17. Lee N Bessho Y Wei K Szostak JW Suga H ( 2000) Ribozyme-catalyzed tRNA aminoacylation. Nat Struct Biol 1, 28 33.
18. Liu DR Magliery TJ Pastrnak M Schultz PG ( 1997) Engineering a tRNA and aminoacyl-tRNA synthase for the site-specific incorporation of unnatural amino acids into proteins in vivo. Proc Natl Acad Sci USA 94, 10092 10097.
19. Wang L Schultz PG ( 2001) A general approach for the generation of orthogonal tRNAs. Chem Biol 9, 883 890.
20. Hohsaka T Ashizuka Y Sisido M ( 1999) Incorporation of two nonnatural amino acids into proteins through extension of the genetic code. Nucleic Acids Symp Series 42, 79 80.
21. Hohsaka T Ashizuka Y Murakami H Sisido M ( 2001) Five-base codons for incorporation of nonnatural amino acids into proteins. Nucleic Acids Res 29, 3646 3651.
22. Krzyżaniak A Barciszewski JSa łański P Jurczak J ( 1994) The non-enzymatic specific aminoacylation of transfer RNA at high pressure. Int J Biol Macromol 16, 153 158.
23. Krzyżaniak A Salański P Twardowski T Jurczak J Barciszewski J ( 1998) tRNA aminoacylated at high pressure is a correct substrate for protein biosynthesis. Biochem Mol Biol Int 45, 489 500.
24. Harvey DJ ( 2000) Collision-induced fragmentation of underivatized N-linked carbohydrates ionized by electrospray. J Mass Spektr 35, 1178 1190.
25. Barciszewski J Siboska G Pedersen BO Clark BFC Rattan S ( 1996) Evidence for presence of kinetin in DNA and cell extracts. FEBS Lett 393, 197 200.
26. Giel-Pietraszuk M Barciszewski J ( 2005) A nature of conformational changes of yeast tRNAPhe. High hydrostatic pressure effects. Int J Biol Macromol 37, 109 114.
27. Giel-Pietraszuk M Gdaniec Z Brukwicki T Barciszewski J ( 2006) Molecular mechanism of high pressure action on lupanine. J Mol Struct, in press.
28. Wickramasinghe NSMD Staves MP Lacey JC Jr. ( 1991) Stereoselective, nonenzymatic, intramolecular transfer of amino acids. Biochemistry 30, 2768 2772.
29. Lacey JC Jr., Mullins DW Watkins CL ( 1986) Aliphatic amino acid side chains associate with the 'face' of the adenine ring. J Biomol Struct Dyn 3, 783 793.
30. Val with yeast valyl-tRNA synthetase. Eur J Biochem 31, 335 344.
31. Buerle T Pichersky E ( 2002) Enzymatic synthesis and purification of aromatic coenzyme A esters. Anal Chem 302, 305 312.
32. Jakubowski H ( 1998) Aminoacylation of coenzyme A and pantetheine by aminoacyl-tRNA synthetases: possible link between noncoded and coded peptide synthesis. Biochemistry 37, 5147 5153.
33. Jakubowski H ( 2000) Amino acid selectivity in the aminoacylation of coenzyme A and RNA minihelices by aminoacyl-tRNA synthetases. J Biol Chem 275, 34845 34848.
34. Weber AL Lacey JC Jr. ( 1975) Aminoacyl transfer from adenylate anhydride to polyribonucleotides. J Mol Evol 6, 309 320.
35. Barciszewska M Joachimiak A Barciszewski J ( 1989) The initiator transfer ribonucleic acids from yellow lupin seeds. Correction of the nucleotide sequence and crystallisation. Phytochemistry 28, 2039 2043.
36. Pulikowska J Barciszewska M Barciszewski J Joachimiak A Rafalski AJ Twardowski T ( 1979) Effect of elastase on elongation factor 1 from wheat germ. Biochem Biophys Res Commun 91, 1011 1017.
37. Vershney U Lee Ch P RajBhandary UL ( 1991) Direct analysis of aminoacylation levels of tRNAs in vitro. J Biol Chem 266, 24712 24717.
38. Bonner WM Laskey RA ( 1974) A film detection method for tritium-labelled proteins and nucleic acids in polyacrylamide gels. Eur J Biochem 46, 83 88.
39. 14C in polyacrylamide gels fluorography. Eur J Biochem 56, 335 341.
40. Draper DE Deckman I Vartikar J ( 1988) Physical studies of ribosomal protein - RNA interactions. Methods Enzymol 164, 203 209.
41. Joachimiak A Barciszewski J Twardowski T Barciszewska M Wiewiórowski M ( 1978) Purification and properties of methionyl-tRNA-synthetase from yellow lupine seeds. FEBS Lett 93, 51 54.
42. Gamian A Krzyzaniak A Barciszewska MZ Gawronska I Barciszewski J ( 1991) Specific incorporation of glycine into bacterial lipopolysaccharide. Novel function of specific transfer ribonucleic acids. Nucleic Acids Res 19, 6021 6025.
43. Kinjo M Ishigami M Hasegawa T Nagano K ( 1984) Differential coupling efficiency of chemically activated amino acid to tRNA. J Mol Evol 20, 59 65.
44. Lamla T Stiege S Erdman VA ( 2002) An improved protein bioreactor efficient product isolation during in vitro protein biosynthesis via affinity tag. Mol Cel Proteom 1, 466 471.