Phylogeography and genetic differentiation along the distributional range of the orchid Epidendrum fulgens: A neotropical coastal species not restricted to glacial refugia

Journal of Biogeography

Volumn 38, Issue 10, 2011, Pages 1923-1935

  Pinheiro, Fábio ^a,b   de Barros, Fábio ^a   Palma Silva, Clarisse ^a   Fay, Michael F ^c   Lexer, Christian ^d   Cozzolino, Salvatore ^e  

^a Pós graduação em Biodiversidade Vegetal e Meio Ambiente   (Brazil)

^b UNIVERSITY OF SÃO PAULO   (Brazil)

^c JODRELL LABORATORY   (United Kingdom)

^d UNIVERSITY OF FRIBOURG   (Switzerland)

^e UNIVERSITY OF NAPLES FEDERICO II   (Italy)

Author keywords

Brazilian Atlantic Forest; Epidendrum; Gene flow; Genetic structure; Microsatellites; Orchidaceae; Phylogeography

Indexed keywords

BAYESIAN ANALYSIS; BIOME; COALESCENCE; COASTAL ZONE; DEMOGRAPHY; DIVERGENCE; DUNE; FRAGMENTATION; GENE FLOW; GENETIC DIFFERENTIATION; GENETIC MARKER; GENETIC STRUCTURE; GLACIAL ENVIRONMENT; GRANITE; GRASSLAND; HABITAT TYPE; HERB; LAST GLACIAL MAXIMUM; NEOTROPICAL REGION; OBSERVATIONAL METHOD; OUTCROP; PHYLOGEOGRAPHY; PLANT COMMUNITY; PLASTID; POPULATION BOTTLENECK; POPULATION STRUCTURE; REFUGIUM; SUBTROPICAL REGION; TAXONOMY; VEGETATION STRUCTURE;

ATLANTIC FOREST;

ANIMALIA; EPIDENDRUM; ORCHIDACEAE;

EID: 80052744909     PISSN: 03050270     EISSN: 13652699     Source Type: Journal    
DOI: 10.1111/j.1365-2699.2011.02539.x     Document Type: Article

References (70)

1. Antonelli, A., Verola, C., Parisod, C. & Gustafsson, A.L. (2010) Climate cooling promoted the expansion and radiation of a threatened group of South American orchids (Epidendroideae: Laeliinae). Biological Journal of the Linnean Society, 100, 597-607.
2. Antunes, A., Faria, R., Johnson, W.E., Guyomard, R. & Alexandrino, P. (2006) Life on the edge: the long-term persistence and contrasting spatial genetic structure of distinct brown trout life histories at their ecological limits. Journal of Heredity, 97, 193-205.
3. Arditti, J. & Ghani, A.K.A. (2000) Numerical and physical properties of orchid seeds and their biological implications. New Phytologist, 145, 367-421.
4. Bandelt, H.J., Forster, P. & Roehl, A. (1999) Median-joining networks for inferring intraspecific phylogenies. Molecular Biology and Evolution, 16, 37-48.
5. Bateman, R.M., Smith, R.J. & Fay, M.F. (2008) Morphometric and population genetic analyses elucidate the origin, evolutionary significance and conservation implications of Orchis × angusticruris (O. purpurea × O. simia), a hybrid orchid new to Britain. Botanical Journal of the Linnean Society, 157, 687-711.
6. Behling, H. (2002) South and southeast Brazilian grasslands during Late Quaternary times: a synthesis. Palaeogeography, Palaeclimatology, Palaeoecology, 177, 19-27.
7. Behling, H. & Negrelle, R.R.B. (2001) Tropical rain forest and climate dynamics of the Atlantic lowland, southern Brazil, during the Late Quaternary. Quaternary Research, 56, 383-389.
8. Bridle, J.R. & Vines, T.H. (2007) Limits to evolution at range margins: when and why does adaptation fail? Trends in Ecology and Evolution, 22, 140-147.
9. Burton, R.S. (1997) Genetic evidence for long term persistence of marine invertebrate populations in an ephemeral environment. Evolution, 51, 993-998.
10. Cabanne, G.S., Santos, F.R. & Miyaki, C.Y. (2007) Phylogeography of Xiphorhynchus fuscus (Passeriformes, Dendrocolaptidae): vicariance and recent demographic expansion in southern Atlantic forest. Biological Journal of the Linnean Society, 91, 73-84.
11. Carnaval, A.C., Hickerson, M.J., Haddad, C.F.B., Rodrigues, M.T. & Moritz, C. (2009) Stability predicts genetic diversity in the Brazilian Atlantic forest hotspot. Science, 323, 785-789.
12. Chung, M.Y., Nason, J.D. & Chung, M.G. (2005) Spatial genetic structure in populations of the terrestrial orchid Orchis cyclochila (Orchidaceae). Plant Systematics and Evolution, 254, 209-219.
13. van der Cingel, N.A. (2007) Pollination of orchids by Lepidoptera: outcrossing by long distance transport. Orchid biology, reviews and perspectives, Vol. IX (ed. by K.M. Cameron, J. Arditti and T. Kull), pp. 201-259. The New York Botanical Press, New York.
14. Cornuet, J.M. & Luikart, G. (1996) Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data. Genetics, 144, 2001-2014.
15. Cosacov, A., Sérsic, A.N., Johnson, L., Sosa, V. & Cocucci, A.A. (2010) Multiple periglacial refugia in the Patagonian steppe and post-glacial colonization of the Andes: the phylogeography of Calceolaria polyrhiza. Journal of Biogeography, 37, 1463-1477.
16. Costa, L.P. (2003) The historical bridge between the Amazon and the Atlantic forest of Brazil: a study of molecular phylogeography with small mammals. Journal of Biogeography, 30, 71-86.
17. Cozzolino, S. & Widmer, A. (2005) Orchid diversity: an evolutionary consequence of deception? Trends in Ecology and Evolution, 20, 487-494.
18. Cozzolino, S., Cafasso, D., Pellegrino, G., Musacchio, A. & Widmer, A. (2003) Fine-scale phylogeographical analysis of Mediterranean Anacamptis palustris (Orchidaceae) populations based on chloroplast minisatellite and microsatellite variation. Molecular Ecology, 12, 2783-2792.
19. Dieringer, D. & Schlötterer, C. (2003) Microsatellite analyzer (MSA): a platform independent analysis tool for large microsatellite data sets. Molecular Ecology Notes, 3, 167-169.
20. Diniz-Filho, J.A.F., Telles, M.P.C., Bonatto, S., Eizirik, E., Freitas, T.R.O., de Marco, P., Santos, F.R., Solé-Cava, A. & Soares, T.N. (2008) Mapping the evolutionary twilight zone: molecular markers, populations and geography. Journal of Biogeography, 35, 753-763.
21. Dirienzo, A., Peterson, A.C., Garza, J.C., Valdes, A.M., Slatkin, M. & Freimer, N.B. (1994) Mutational processes of simple-sequence repeat loci in human populations. Proceedings of the National Academy of Sciences USA, 91, 3166-3170.
22. Duminil, J., Fineschi, S., Hampe, A., Jordano, P., Salvini, D., Vendramin, G.G. & Petit, R.J. (2007) Can population genetic structure be predicted from life-history traits? The American Naturalist, 169, 662-672.
23. Eckert, C.G., Samis, K.E. & Lougheed, S.C. (2008) Genetic variation across species' geographical ranges: the central-marginal hypothesis and beyond. Molecular Ecology, 17, 1170-1188.
24. Ennos, R.A. (1994) Estimating the relative rates of pollen and seed migration among plant populations. Heredity, 72, 250-259.
25. Evanno, G., Regnaut, S. & Goudet, J. (2005) Detecting the number of clusters of individuals using the software structure: a simulation study. Molecular Ecology, 14, 2611-2620.
26. Excoffier, L. & Lischer, H.E.L. (2010) Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Molecular Ecology Resources, 10, 564-567.
27. Fay, M.F., Bone, R., Cook, P., Kahandawala, I., Greensmith, J., Harris, S., Pedersen, H.Æ., Ingrouille, M.J. & Lexer, C. (2009) Genetic diversity in Cypripedium calceolus (Orchidaceae) with a focus on northwestern Europe, as revealed by plastid DNA length polymorphisms. Annals of Botany, 104, 517-525.
28. Ferreira, P.M.A., Müller, S.C., Boldrini, I.I. & Eggers, L. (2010) Floristic and vegetation structure of a granitic grassland in southern Brazil. Revista Brasileira de Botânica, 33, 21-36.
29. Fuhro, D. (2006) O sistema Asclepias curassavica L., Epidendrum fulgens Brongn. e Lantana camara L. constitui um complexo mimético, com borboletas como operadores? Um estudo no Parque Estadual de Itapeva, Torres, RS. MSc Thesis, Universidade Federal do Rio Grande do Sul, Porto Alegre, Brazil. Available at:.
30. Garza, J.C. & Williamson, E.G. (2001) Detection of reduction in population size using data from microsatellite loci. Molecular Ecology, 10, 305-318.
31. Goudet, J. (1995) FSTAT (version 1.2): a computer program to calculate F-statistics. Journal of Heredity, 86, 485-486.
32. Hágsater, E. & Soto-Arenas, M.A. (2005) Epidendrum L. Genera Orchidacearum, Vol. 4 (ed. by A.M. Pridgeon, P.J. Cribb, M.W. Chase and F.N. Rasmussen), pp. 236-251, Oxford University Press, Oxford.
33. Hedrick, P. (2005) A standardized genetic differentiation measure. Evolution, 59, 1633-1638.
34. Hesp, P.A., Giannini, P.C.F., Martinho, C.T., Silva, G.M. & Neto, N.E.A. (2009) The Holocene barrier systems of the Santa Catarina coast, southern Brazil. Geology and geomorphology of Holocene coastal barriers of Brazil (ed. by S.R. Dillenburg and P.A. Hesp), pp. 94-133. Springer-Verlag, Berlin.
35. Hewitt, G.M. (1996) Some genetic consequences of ice ages, and their role in divergence and speciation. Biological Journal of the Linnean Society, 58, 247-276.
36. Hubisz, M.J., Falush, D., Stephens, M. & Pritchard, J.K. (2009) Inferring weak population structure with the assistance of sample group information. Molecular Ecology Resources, 9, 1322-1332.
37. Jacquemyn, H., Brys, R., Vandepitte, K., Honnay, O. & Ruiz, I.R. (2006) Fine-scale genetic structure of life history stages in the food deceptive orchid Orchis purpurea. Molecular Ecology, 15, 2801-2808.
38. Jakob, S.S., Martinez-Meyer, E. & Blattner, F.R. (2009) Phylogeographic analyses and paleodistribution modeling indicate Pleistocene in situ survival of Hordeum species (Poaceae) in southern Patagonia without genetic or spatial restriction. Molecular Biology and Evolution, 26, 907-923.
39. Kadereit, J.W., Arafeh, R., Somogyi, G. & Westberg, E. (2005) Terrestrial growth and marine dispersal? Comparative phylogeography of five coastal plant species at a European scale Taxon, 54, 861-876.
40. King, M.G., Horning, M.E. & Roalson, E.H. (2009) Range persistence during the last glacial maximum: Carex macrocephala was not restricted to glacial refugia. Molecular Ecology, 18, 4256-4269.
41. Kirkpatrick, M. & Barton, N.H. (1997) Evolution of a species' range. The American Naturalist, 150, 1-23.
42. Leal, M.G. & Lorscheitter, M.L. (2007) Plant succession in a forest on the lower northeast slopes of Serra Geral, Rio Grande do Sul, and Holocene palaeoenvironments, southern Brazil. Acta Botanica Brasilica, 21, 1-10.
43. Ledru, M.P., Salatino, M.L.F., Ceccantini, G., Salatino, A., Pinheiro, F. & Pintaud, J.C. (2007) Regional assessment of the impact of climatic change on the distribution of a tropical conifer in the lowlands of South America. Diversity and Distributions, 13, 761-771.
44. Micheneau, C., Duffy, K.J., Smith, R.J., Stevens, L.J., Stout, J.C., Civeyrel, L., Cowan, R.S. & Fay, M.F. (2010) Plastid microsatellites for the study of genetic variability in the widespread Cephalanthera longifolia, C. damasonium and C. rubra (Neottieae, Orchidaceae), and cross amplification in other Cephalanthera species. Botanical Journal of the Linnean Society, 163, 181-193.
45. Moreira, A.S.F.P., Fuhro, D. & Isaias, R.M.S. (2008) Anatomia floral de Epidendrum fulgens Brongn. (Orchidaceae - Epidendroideae) com ênfase no nectário e sua funcionalidade. Revista de Biologia Neotropical, 5, 23-29.
46. Myers, N., Mittermeier, R.A., Mittermeier, C.G., da Fonseca, G.A.B. & Kent, J. (2000) Biodiversity hotspots for conservation priorities. Nature, 403, 853-858.
47. Nei, M. & Chesser, R.K. (1983) Estimation of fixation indices and gene diversities. Annals of Human Genetics, 47, 253-259.
48. Nordström, S. & Hedrén, M. (2009) Genetic diversity and differentiation of allopolyploid Dactylorhiza (Orchidaceae) with particular focus on the D. majalis ssp. traunsteineri/lapponica complex. Biological Journal of the Linnean Society, 97, 52-67.
49. van Oosterhout, C., Hutchinson, W.F., Wills, D.P.M. & Shipley, P. (2004) micro-checker: software for identifying and correcting genotyping errors in microsatellite data. Molecular Ecology Notes, 4, 535-538.
50. Ortiz, M.Á., Tremetsberger, K., Talavera, S., Stuessy, T. & García-Castaño, J.L. (2007) Population structure of Hypochaeris salzmanniana DC. (Asteraceae), an endemic species to the Atlantic coast on both sides of the Strait of Gibraltar, in relation to Quaternary sea level changes. Molecular Ecology, 16, 541-552.
51. Palma-Silva, C., Lexer, C., Paggi, G.M., Barbará, T., Bered, F. & Bodanese-Zanettini, M.H. (2009) Range-wide patterns of nuclear and chloroplast DNA diversity in Vriesea gigantea (Bromeliaceae), a neotropical forest species. Heredity, 103, 503-512.
52. Petit, R.J., El Mousadik, A. & Pons, O. (1998) Identifying populations for conservation on the basis of genetic markers. Conservation Biology, 12, 844-855.
53. Petit, R.J., Duminil, J., Fineschi, S., Hampe, A., Salvini, D. & Vendramin, G.G. (2005) Comparative organization of chloroplast, mitochondrial and nuclear diversity in plant populations. Molecular Ecology, 14, 689-701.
54. Pinheiro, F., Santos, M.O., Barros, F., Meyer, D., Salatino, A., Souza, A.P. & Cozzolino, S. (2008a) Isolation and characterization of microsatellite loci in the Brazilian orchid Epidendrum fulgens. Conservation Genetics, 9, 1661-1663.
55. Pinheiro, F., Santos, M.O., Palma-Silva, C., Barros, F., Meyer, D., Salatino, A., Souza, A.P. & Cozzolino, S. (2008b) Isolation and characterization of microsatellite loci in Epidendrum puniceoluteum, an endemic orchid from the Atlantic Rainforest. Molecular Ecology Resources, 8, 1114-1116.
56. Pinheiro, F., Palma-Silva, C., Barros, F., Félix, L.P., Lexer, C., Cozzolino, S. & Fay, M.F. (2009) Chloroplast microsatellite markers for the Neotropical orchid genus Epidendrum, and cross-amplification in other Laeliinae species (Orchidaceae). Conservation Genetics Resources, 1, 505-511.
57. Pons, O. & Petit, R.J. (1996) Measuring and testing genetic differentiation with ordered vs. unordered alleles. Genetics, 144, 1237-1245.
58. Rambo, B. (1950) A Porta de Torres. Anais Botânicos do Herbário Barbosa Rodrigues, 2, 125-136.
59. Rambo, B. (1954a) Análise histórica da flora de Porto Alegre. Sellowia, 6, 9-111.
60. Rambo, B. (1954b) História da flora do litoral riograndense. Sellowia, 6, 112-172.
61. Raymond, M. & Rousset, F. (1995) GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. Journal of Heredity, 86, 248-249.
62. Ribeiro, R.A., Lemos-Filho, J.P., Ramos, A.C.S. & Lovato, M.B. (2011) Phylogeography of the endangered rosewood Dalbergia nigra (Fabaceae): insights into the evolutionary history and conservation of the Brazilian Atlantic Forest. Heredity, 106, 46-57.
63. Salgueiro, F., Felix, D., Caldas, J.F., Margis-Pinheiro, M. & Margis, R. (2004) Even population differentiation for maternal and biparental gene markers in Eugenia uniflora, a widely distributed species from the Brazilian coastal Atlantic rain forest. Diversity and Distributions, 10, 201-210.
64. Scarano, F.R. (2002) Structure, function and floristic relationships of plant communities in stressful habitats marginal to the Brazilian Atlantic Rainforest. Annals of Botany, 90, 517-524.
65. Seeliger, U. (1992) Coastal foredunes of southern Brazil: physiography, habitats, and vegetation. Coastal plant communities of Latin America (ed. by U. Seeliger), pp. 367-381. Academic Press, San Diego, CA.
66. Souza, C.R.G., Hiruma, S.T., Sallun, A.E.M., Ribeiro, R.R. & Sobrinho, J.M.A. (2008) "Restinga", conceitos e empregos do termo no Brasil e implicações na legislação ambiental. Instituto Geológico, São Paulo.
67. Stehlik, I., Schneller, J.J. & Bachmann, K. (2002) Immigration and in situ glacial survival of the low-alpine Erinus alpinus (Scrophulariaceae). Biological Journal of the Linnean Society, 77, 87-103.
68. Thomé, M.T.C., Zamudio, K.R., Giovanelli, J.G.R., Haddad, C.F.B., Baldissera, F.A., Jr & Alexandrino, J. (2010) Phylogeography of endemic toads and post-Pliocene persistence of the Brazilian Atlantic Forest. Molecular Phylogenetics and Evolution, 55, 1018-1031.
69. Weir, B.S. & Cockerham, C.C. (1984) Estimating F-statistics for the analysis of population structure. Evolution, 38, 1358-1370.
70. Widmer, A. & Lexer, C. (2001) Glacial refugia: sanctuaries of allelic richness, but not for gene diversity. Trends in Ecology and Evolution, 16, 267-269.