Fine-scale phylogeographical analysis of Mediterranean Anacamptis palustris (Orchidaceae) populations based on chloroplast minisatellite and microsatellite variation

Molecular Ecology

Volumn 12, Issue 10, 2003, Pages 2783-2792

  Cozzolino, S ^a   Cafasso, D ^a   Pellegrino, G ^b   Musacchio, A ^b   Widmer, A ^c  

^a UNIVERSITY OF NAPLES FEDERICO II   (Italy)

^b UNIVERSITY OF CALABRIA   (Italy)

^c ETH ZURICH   (Switzerland)

Author keywords

Anacamptis palustris; Genetic diversity; Microsatellite; Minisatellite; Orchid; Phylogeography

Indexed keywords

BASE SEQUENCE; DNA PRIMERS; DNA, CHLOROPLAST; EUROPE; GENE FREQUENCY; GENETICS, POPULATION; GEOGRAPHY; MICROSATELLITE REPEATS; MINISATELLITE REPEATS; MOLECULAR SEQUENCE DATA; ORCHIDACEAE; PHYLOGENY; SEQUENCE ALIGNMENT; VARIATION (GENETICS);

ANACAMPTIS; EMBRYOPHYTA; EPIPACTIS PALUSTRIS; ORCHIDACEAE;

EID: 0141724863     PISSN: 09621083     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-294X.2003.01958.x     Document Type: Article

References (42)

1. Aceto S, Cozzolino S, Gaudio L, Nazzaro R, De Luca P (1999) Pollination flow between Orchis morio and O. papilionacea in hybrid formation in different habitats. International Journal of Plant Sciences, 160, 1153-1156.
2. Arditti J, Ghani AKA (2000) Tansley review, 110 - Numerical and physical properties of orchid seeds and their biological implications. New Phytologist, 145, 367-321.
3. Arduino P, Verra F, Cianchi R, Rossi W, Cornas B, Bullini L (1996) Genetic variation and natural hybridization between Orchis laxiflora and Orchis palustris (Orchidaceae). Plant Systematics and Evolution, 202, 87-109.
4. Bateman RM, Hollingsworth PM, Preston J, Yi-Bo L, Pridgeon AM, Chase MW (2003) Molecular phylogenetics and evolution of Orchidinae and selected Habenariinae (Orchidaceae). Botanical Journal of the Linnean Society, 142, 1-40.
5. Bell M, Walker MJC (1992) Late Quaternary Environmental Change. Longman, Harlow.
6. Bocquet G, Widler B, Kiefer H (1978) The Messinian model - A new outlook for the floristics and systematics of the Mediterranean area. Candollea, 33, 269-287.
7. Cafasso D, Pellegrino G, Musacchio A, Widmer A, Cozzolino S (2001) Characterization of a minisatellite repeat locus in the chloroplast genome of Orchis palustris (Orchidaceae). Current Genetics, 39, 394-398.
8. Cesaroni D, Venanzetti F, Allegrucci G, Sbordoni V (1997) Mitochondrial DNA length variation and heteroplasmy in natural populations of European sea bass, Dicentrarchus labrax. Molecular Biology and Evolution, 14, 560-568.
9. Colantoni P, Gallignani P, Lenaz R (1979) Late Pleistocene and Holocene evolution of the North Adriatic continental shelf (Italy). Marine Geology, 33, 41-50.
10. Comes HP, Kadereit JW (1998) The effect of Quaternary climatic changes on plant distribution and evolution. Trends in Plant Sciences, 3, 432-438.
11. Conti F, Manzi A, Pedrotti F (1992) Libro rosso delle piante d'Italia. Associazione italiana per il WWF e la Società Botanica Italiana, Roma.
12. Cozzolino S, Aceto S, Caputo P, Widmer A, Dafni A (2001) Speciation processes in Eastern Mediterranean Orchis s.1. species: molecular evidence and the role of pollination biology. Israeli Journal of Plant Science, 49, 91-103.
13. Cozzolino S, Cafasso D, Pellegrino G, Musacchio A, Widmer A (2003) Molecular evolution of a chloroplast tandem repeat locus in an orchid lineage. Journal of Molecular Evolution.
14. Delforge P (2001) Guide des Orchidées d'Europe. Delachaux et Niestlé S. A., Lausanne.
15. Demesure B, Comps B, Petit RJ (1996) Chloroplast DNA phylogeography of the common beech (Fagus sylvatica L.) in Europe. Evolution, 50, 2515-2510.
16. Doyle JJ, Doyle JL (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemical Bulletin, 19, 11-15.
17. Ennos RA (1994) Estimating the relative rates of pollen and seed migration among plant populations. Heredity, 80, 584-593.
18. Estoup A, Jarne P, Cornuet JM (2002) Homoplasy and mutation model at microsatellite loci and their consequences for population genetics analysis. Molecular Ecology, 11, 1591-1604.
19. Excoffier L, Smouse PE, Quattro JM (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics, 131, 479-491.
20. Hewitt GM (1996) Some genetic consequences of ice ages and their role in divergence and speciation. Biology Journal of Linnean Society, 58, 247-276.
21. Hipkins VD, Marshall KA, Neale DB, Rottmann WH, Strauss SH (1995) A mutation hotspot in the chloroplast genome of a conifer (Douglas fir: Pseudotsuga) is caused by variability in the number of direct repeats derived from a partially duplicated tRNA gene. Current Genetics, 27, 572-579.
22. King AR, Ferris C (2002) A variable miniatellite sequence in the chloroplast genome of Sorbus L. (Rosaceae: Maloideae). Genome, 45, 570-576.
23. Marshall HD, Newton C, Ritland K (2002) Chloroplast phylogeography and evolution of highly polymorphic microsatellites in lodgepole pine (Pinus contorta). Theoretical and Applied Genetics, 104, 367-378.
24. Mason-Gamer RJ, Holsinger KE, Jansen RK (1995) Chloroplast DNA haplotype variation within and among populations of Coreopsis grandiflora (Asteraceae). Molecular Biology and Evolution, 12, 371-381.
25. Miller MP (1997) Tools for Population Genetic Analyses (TFPGA) 1.3: A Windows Program for the Analysis of Allozyme and Molecular Population Genetic Data. Computer software distributed by the author.
26. Nei M (1987) Molecular Evolutionary Genetics. Columbia University Press, New York.
27. Oddou-Muratorio S, Petit RJ, Le Guerroue B, Guesnet D, Demesure B (2001) Pollen-versus seed-mediated gene flow in a scattered forest tree species. Evolution, 55, 1123-1135.
28. Petit RJ, Kremer A, Wagner DB (1993) Finite island model for organelle and nudear genes in plants. Heredity, 71, 630-641.
29. Pons O, Petit RJ (1995) Estimation, variance and optimal sampling of gene diversity. 1. Haploid locus. Theoretical and Applied Genetics, 90, 462-470.
30. Powell W, Morgante M, McDevitt R, Vendramin GG, Rafalski JA (1995) Polymorphic simple sequence repeat regions in chloroplast genomes: application to the population genetics of pines. Proceedings of the National Academy of Sciences of the USA, 92, 7759-7763.
31. Provan J, Soranzo N, Wilson NJ, Goldstein DB, Powell W (1999) A low mutation rate for chloroplast microsatellites. Genetics, 153, 943-947.
32. Rand DM, Harrison RG (1989) Molecular population genetics of mtDNA size variation in crickets. Genetics, 121, 551-569.
33. Schaal BA, Hayworth DA, Olsen KM, Rauscher JT, Smith WA (1998) Phylogeographic studies in plants: problems and prospects. Molecular Ecology, 7, 465-474.
34. Schneider S, Roessli D, Excoffier L (2000) ARLEQUIN, Version 2.000: A Software for Population Genetics Data Analysis. Genetics and Biometry Laboratory. University of Geneva, Switzerland.
35. Skinner DZ (2000) Non random chloroplast DNA hypervariability in Medicago saliva. Theoretical and Applied Genetics, 101, 1242-1249.
36. Soliva M, Widmer A (1999) Generic and floral divergence among sympatric populations of Gymnadenia conopsea s. 1. (Orchidaceae) with different flowering phenology. International Journal of Plant Science, 160, 897-905.
37. Squirrell J, Hollingsworth M, Bateman RM et al. (2001) Partitioning and diversity of nuclear and organelle markers in native and introduced populations of Epipactis helleborine (Orchidaceae). American Journal of Botany, 88, 1409-1418.
38. Taberlet P, Fumagalli L, Wust-Saucy AG, Cosson JF (1998) Comparative phylogeography and postglacial colonization routes in Europe. Molecular Ecology, 7, 453-464.
39. Weising K, Gardner RC (1999) A set of conserved PCR primers for the analysis of simple sequence repeats polymorphisms in chloroplast genomes of dicotyledonous angiosperms. Genome, 42, 9-19.
40. Widmer A, Baltisberger M (1999) Extensive intraspecific chloroplast DNA (cpDNA) variation in the alpine Draba aizoides L. (Brassicaceae): haplotype relationships and population structure. Molecular Ecology, 8, 1405-1416.
41. Widmer A, Lexer C (2001) Glacial refugia: sanctuaries of allelic richness, but not for gene diversity. Trends in Ecology and Evolution, 16, 267-269.
42. Wolfe KH, Li WH, Sharp PM (1987) Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast and nuclear DNA. Proceedings of the National Academy of Sciences of the USA, 84, 9054-9058.