Tracking nanometer-scale fluorescent particles in two dimensions with a confocal microscope

IEEE Transactions on Control Systems Technology

Volumn 19, Issue 5, 2011, Pages 1269-1278

  Shen, Zhaolong ^a   Andersson, Sean B ^a  

^a Boston University   (United States)

Author keywords

Fluorescence microscopy; linear quadratic gaussian (LQG) control; particle tracking

Indexed keywords

CHARGE-COUPLED DEVICE CAMERA; CONFOCAL MICROSCOPES; DISCRETE LOCATION; ESTIMATION PROCEDURES; EXPERIMENTAL VALIDATIONS; FLUORESCENCE INTENSITY MEASUREMENT; FLUORESCENT PARTICLE; GAUSSIAN FITS; INDIVIDUAL PARTICLES; LINEAR QUADRATIC GAUSSIAN; LINEAR QUADRATIC GAUSSIAN REGULATOR; LQG ALGORITHMS; MULTIPLE PARTICLES; NANO-METER-SCALE; OFFLINE; PARTICLE TRACKING; POSITION ESTIMATES; TRACKING SCHEME; TWO-DIMENSION;

FLUORESCENCE MICROSCOPY; GAUSSIAN DISTRIBUTION;

FLUORESCENCE;

EID: 80051901108     PISSN: 10636536     EISSN: None     Source Type: Journal    
DOI: 10.1109/TCST.2010.2067449     Document Type: Article

References (43)

1. W. E. Moerner, "New directions in single-molecule imaging and analysis," in Proc. Nat. Acad. Sci., Jul. 2007, vol. 104, pp. 12-596-12-602. (Pubitemid 47255200)
2. H. P. Babcock, C. Chen, and X. Zhuang, "Using single-particle tracking to study nuclear trafficking of viral genes," Biophys. J., vol. 87, no. 4, pp. 2749-2758, Oct. 2004.
3. K. Murase, T. Fujiwara, Y. Umemura, K. Suzuki, R. Iino, H. Yamashita, M. Saito, H. Murakoshi, K. Ritchie, and A. Kusumi, "Ultrafine membrane compartments for molecular diffusion as revealed by single molecule techniques," Biophys. J., vol. 86, no. 6, pp. 4075-4093, Jun. 2004. (Pubitemid 38780282)
4. M. T. Valentine, P. D. Kaplan, D. Thota, J. C. Crocker, T. Gisler, R. K. Prud'homme, M. Beck, and D. A. Weitz, "Investigating the microenvironments of inhomogeneous soft materials with multiple particle tracking," Phys. Rev. E, vol. 64, pp. 061506-1-061506-9, 2001.
5. Y. Tseng, T. P. Kole, and D.Wirtz, "Micromechanical mapping of live cells by multiple-particle-tracking microrheology," Biophys. J., vol. 83, pp. 3162-3176, 2002. (Pubitemid 36041936)
6. J. Suh, M. Dawson, and J. Hanes, "Real-time multiple-particle tracking: Applications to drug and gene delivery," Adv. Drug Del. Rev., vol. 57, no. 1, pp. 63-78, Jan. 2005. (Pubitemid 39424064)
7. E. J. G. Peterman, H. Sosa, and W. E. Moerner, "Single-molecule fluorescence spectroscopy and microscopy of biomolecular motors," Ann. Rev. Phys. Chem., vol. 55, pp. 79-96, 2004.
8. E. S. Yeung, "Dynamics of single biomolecules in free solution," Ann. Rev. Phys. Chem., vol. 55, pp. 97-126, 2004.
9. M. K. Cheezum, W. F.Walker, and W. H. Guilford, "Quantitative comparison of algorithms for tracking single fluorescent particles," Biophys. J., vol. 81, no. 4, pp. 2378-2388, Oct. 2001. (Pubitemid 32917184)
10. R. E. Thompson, D. R. Larson, and W. W. Webb, "Precise nanometer localization analysis for individual fluorescent probes," Biophys. J., vol. 82, no. 5, pp. 2775-2783, May 2002. (Pubitemid 34441314)
11. A. J. Berglund, M. D. McMahon, J. J. McClelland, and J. A. Liddle, "Fast, bias-free algorithm for tracking single particles with variable size and shape," Opt. Expr., vol. 16, no. 18, pp. 14-064-14-075, Sep. 2008.
12. S. W. Hell, "Far-field optical nanoscopy," Science, vol. 316, no. 5828, pp. 1153-1158, May 2007. (Pubitemid 46877470)
13. X. Michalet, S. Weiss, and M. Jäger, "Single-molecule fluorescence studies of protein folding and conformational dynamics," Chem. Rev., vol. 106, no. 5, pp. 1785-1813, Apr. 2006. (Pubitemid 43792781)
14. H. P. Kao and A. S. Verkman, "Tracking of single fluorescent particles in three dimensions: Use of cylindrical optics to encode particle position," Biophys. J., vol. 67, no. 3, pp. 1291-1300, Sep. 1994. (Pubitemid 24272983)
15. M. Speidel, A. Jonáš, and E.-L. Florin, "Three-dimensional tracking of fluorescent nanoparticles with subnanometer precision by use of offfocus imaging," Opt. Lett., vol. 28, no. 2, pp. 69-71, 2003.
16. B. Huang, W. Wang, M. Bates, and X. Zhuang, "Three-dimensional super-resolution imaging by stochastic optical reconstruction microscopy," Science, vol. 319, no. 5864, pp. 810-813, Jan. 2008. (Pubitemid 351225870)
17. P. J. Lu, P. A. Sims, H. Oki, J. B. Macarthur, and D. A.Weitz, "Targetlocking acquisition with real-time confocal (TARC) microscopy," Opt. Expr., vol. 15, no. 14, pp. 8702-8712, Jul. 2007. (Pubitemid 47112480)
18. J. Enderlein, "Tracking of fluorescent molecules diffusing within membranes," Appl. Phys. B, vol. 71, no. 5, pp. 773-777, Nov. 2000.
19. A. J. Berglund and H. Mabuchi, "Feedback controller design for tracking a single fluorescent molecule," Appl. Phys. B, vol. 78, no. 5, pp. 653-659, Mar. 2004.
20. V. Levi, Q. Ruan, and E. Gratton, "3-D particle tracking in a twophoton microscope: Application to the study of molecular dynamics in cells," Biophys. J., vol. 88, no. 4, pp. 2919-2928, Apr. 2005. (Pubitemid 40976156)
21. K. McHale, A. J. Berglund, and H. Mabuchi, "Quantum dot photon statistics measured by three-dimensional particle tracking," Nano Lett., vol. 7, no. 11, pp. 3535-3539, Nov. 2007. (Pubitemid 350216058)
22. H. Cang, C. M. Wong, C. S. Xu, A. H. Rizvi, and H. Yang, "Confocal three dimensional tracking of a single nanoparticle with concurrent spectroscopic readouts," Appl. Phys. Lett., vol. 88, no. 22, pp. 223901-1-223901-3, May 2006.
23. H. Cang, C. S. Xu, D. Montiel, and H. Yang, "Guiding a confocal microscope by single fluroescent nanoparticles," Opt. Lett., vol. 32, no. 18, pp. 2729-2731, Sep. 2007. (Pubitemid 351302941)
24. G. A. Lessard, P. M. Goodwin, and J. H. Werner, "Three-dimensional tracking of individual quantum dots," Appl. Phys. Lett., vol. 91, no. 22, p. 224106, Nov. 2007.
25. H. Cang, C. S. Xu, and H. Yang, "Progress in single-molecule tracking spectroscopy," Chem. Phys. Lett., vol. 457, no. 4-6, pp. 285-291, May 2008.
26. S. B. Andersson, "Position estimation of fluorescent probes in a confocal microscope," in Proc. IEEE Conf. Decision Control, 2007, pp. 4950-4955. (Pubitemid 351277926)
27. S. B. Andersson, "Localization of a fluorescent source without numerical fitting," Opt. Expr., vol. 16, no. 23, pp. 18-714-18-724, Nov. 2008.
28. S. Ram, P. Prabhat, E. S. Ward, and R. J. Ober, "Improved single particle localization accuracy with dual objective multifocal plane microscopy," Opt. Expr., vol. 17, no. 8, pp. 6881-6898, Apr. 2009.
29. Z. Shen and S. B. Andersson, "LQG-based tracking of multiple fluorescent particles in two-dimensions in a confocal microscope," in Proc. Amer. Control Conf., 2009, pp. 1682-1687.
30. Z. Shen and S. B. Andersson, "Tracking multiple fluorescent particles in two dimensions in a confocal microscope," in Proc. IEEE Conf. Decision Control, 2009, pp. 6052-6057.
31. D. Y. Abramovitch, S. B. Andersson, L. Y. Pao, and G. Schitter, "A tutorial on the mechanisms, dynamics and control of atomic force microscopes," in Proc. Amer. Control Conf., 2007, pp. 3488-3502.
32. J. E. Jonkman and E. H. K. Stelzer, "Resolution and Contrast in Confocal and Two-photon microscopy," in Confocal and Two-Photon Microscopy. Foundations, Applications, and Advances. New York: Wiley-Liss, 2002, ch. 5, pp. 101-125.
33. C. Kural, H. Balci, and P. R. Selvin, "Molecular motors one at a time: FIONA to the rescue," J. Phys: Cond. Matt., vol. 27, no. 47, pp. S3979-S3995, 2005. (Pubitemid 41607437)
34. S. B. Andersson and T. Sun, "Linear optimal control for tracking a single fluorescent particle in a confocal microscope," Appl. Phys. B, vol. 94, no. 3, pp. 403-409, 2009.
35. Applied Optimal Control. San Francisco, CA: Taylor and Francis, 1975.
36. M. J. Saxton and K. Jacobson, "Single-particle tracking: Applications to membrane dynamics," Ann. Rev. Biophys. Biomol. Struct., vol. 26, pp. 373-399, Jun. 1997. (Pubitemid 27255378)
37. A. J. Berglund and H. Mabuchi, "Performance bounds on single-particle tracking by fluorescence modulation," Appl. Phys. B, vol. 83, no. 1, pp. 127-133, Apr. 2006. (Pubitemid 43333702)
38. A. J. Berglund, K. McHale, and H. Mabuchi, "Fluctuations in closed-loop fluorescent particle tracking," Opt. Expr., vol. 15, no. 12, pp. 7752-7773, Jun. 2007. (Pubitemid 46906990)
39. A. J. Berglund, K. McHale, and H. Mabuchi, "Feedback localization of freely diffusing fluorescent particles near the optical shot-noise limit," Opt. Lett., vol. 32, no. 2, pp. 145-147, Jan. 2006. (Pubitemid 46339992)
40. D. Thomann, D. R. Rines, P. K. Sorger, and G. Danuser, "Automatic fluorescent tag detection in 3D with super-resolution: Application to the analysis of chromosome movement," J. Microscopy, vol. 208, no. 1, pp. 49-64, Oct. 2002. (Pubitemid 35365582)
41. K. Kis-Petikova and E. Gratton, "Distance measurement by circular scanning of the excitation beam in the two-photon microscope," Microscopy Res. Tech., vol. 63, no. 1, pp. 34-49, Jan. 2004. (Pubitemid 37541969)
42. D. Y. Abramovitch, S. Hoen, and R. Workman, "Semi-Automatic tuning of PID gains for atomic force microscopes," in Proc. Amer. Control Conf., 2008, pp. 2684-2689.
43. A. Sebastian and S. M. Salapaka, "Design methodologies for robust nano-positioning," IEEE Trans. Control Syst. Technol., vol. 13, no. 6, pp. 868-876, Nov. 2005. (Pubitemid 41638139)