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Volumn 6, Issue 8, 2011, Pages

Targeting RNA by small molecules: Comparative structural and thermodynamic aspects of aristololactam-β-D-glucoside and daunomycin binding to tRNA phe

Author keywords

[No Author keywords available]

Indexed keywords

ARISTOLOLACTAM GLUCOSIDE; DAUNORUBICIN; PHENYLALANINE TRANSFER RNA; ANTINEOPLASTIC ANTIBIOTIC; ARISTOLOCHIC ACID; ARISTOLOLACTAM-GLUCOSIDE; GLUCOSIDE; RNA;

EID: 80051675861     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0023186     Document Type: Article
Times cited : (47)

References (70)
  • 1
    • 0034783659 scopus 로고    scopus 로고
    • Targeting RNA with small-molecule drugs: Therapeutic opportunities and chemical challenges
    • Gallego J, Varani G, (2001) Targeting RNA with small-molecule drugs: Therapeutic opportunities and chemical challenges. Acc Chem Res 34: 836-843.
    • (2001) Acc Chem Res , vol.34 , pp. 836-843
    • Gallego, J.1    Varani, G.2
  • 3
    • 76649139475 scopus 로고    scopus 로고
    • Molecular recognition of RNA: Challenges for modeling interactions and plasticity
    • Fulle S, Gohlke H, (2010) Molecular recognition of RNA: Challenges for modeling interactions and plasticity. J Mol Recognit 23: 220-231.
    • (2010) J Mol Recognit , vol.23 , pp. 220-231
    • Fulle, S.1    Gohlke, H.2
  • 5
    • 34248634004 scopus 로고    scopus 로고
    • Therapeutic potential for microRNAs
    • Esau CC, Monia BP, (2007) Therapeutic potential for microRNAs. Adv Drug Delivery Rev 59: 101-114.
    • (2007) Adv Drug Delivery Rev , vol.59 , pp. 101-114
    • Esau, C.C.1    Monia, B.P.2
  • 6
    • 0029175661 scopus 로고
    • Translation-targeted therapeutics for viral diseases
    • Harford JB, (1995) Translation-targeted therapeutics for viral diseases. Gene Expr 4: 357-367.
    • (1995) Gene Expr , vol.4 , pp. 357-367
    • Harford, J.B.1
  • 7
    • 0033152070 scopus 로고    scopus 로고
    • RNA and the small molecule world
    • Tor Y, (1999) RNA and the small molecule world. Angew Chem Int Ed 38: 1579-1582.
    • (1999) Angew Chem Int Ed , vol.38 , pp. 1579-1582
    • Tor, Y.1
  • 8
    • 0036761206 scopus 로고    scopus 로고
    • Rational ligand design for RNA: The role of static structure and conformational flexibility in target recognition
    • Hermann T, (2002) Rational ligand design for RNA: The role of static structure and conformational flexibility in target recognition. Biochimie 84: 869-875.
    • (2002) Biochimie , vol.84 , pp. 869-875
    • Hermann, T.1
  • 9
    • 0142106950 scopus 로고    scopus 로고
    • RNA as a drug target: The case of aminoglycosides
    • Vicens Q, Westhof E, (2003) RNA as a drug target: The case of aminoglycosides. Chem BioChem 4: 1018-1023.
    • (2003) Chem BioChem , vol.4 , pp. 1018-1023
    • Vicens, Q.1    Westhof, E.2
  • 10
    • 18144435106 scopus 로고    scopus 로고
    • Rapid preparation of RNA samples for NMR spectroscopy and X-ray crystallography
    • Cheong HK, Hwang E, Lee C, Choi BS, Cheong C, (2004) Rapid preparation of RNA samples for NMR spectroscopy and X-ray crystallography. Nucleic Acids Res 32: e84.
    • (2004) Nucleic Acids Res , vol.32
    • Cheong, H.K.1    Hwang, E.2    Lee, C.3    Choi, B.S.4    Cheong, C.5
  • 11
    • 33751248765 scopus 로고    scopus 로고
    • Impact of static and dynamic A-form heterogeneity on the determination of RNA global structural dynamics using NMR residual dipolar couplings
    • Musselman C, Pitt SW, Gulati K, Foster LL, Andricioaei I, et al. (2006) Impact of static and dynamic A-form heterogeneity on the determination of RNA global structural dynamics using NMR residual dipolar couplings. J Biomol NMR 36: 235-249.
    • (2006) J Biomol NMR , vol.36 , pp. 235-249
    • Musselman, C.1    Pitt, S.W.2    Gulati, K.3    Foster, L.L.4    Andricioaei, I.5
  • 13
    • 0037129948 scopus 로고    scopus 로고
    • Thermodynamics of aminoglycoside-rRNA recognition: The binding of neomycin-class aminoglycosides to the A site of 16S rRNA
    • Kaul M, Pilch DS, (2002) Thermodynamics of aminoglycoside-rRNA recognition: The binding of neomycin-class aminoglycosides to the A site of 16S rRNA. Biochemistry 41: 7695-7706.
    • (2002) Biochemistry , vol.41 , pp. 7695-7706
    • Kaul, M.1    Pilch, D.S.2
  • 14
    • 34247395439 scopus 로고    scopus 로고
    • Monitoring aminoglycoside-induced conformational changes in 16S rRNA through acrylamide quenching
    • Chao PW, Chow CS, (2007) Monitoring aminoglycoside-induced conformational changes in 16S rRNA through acrylamide quenching. Bioorg Med Chem 15: 3825-3831.
    • (2007) Bioorg Med Chem , vol.15 , pp. 3825-3831
    • Chao, P.W.1    Chow, C.S.2
  • 15
    • 0003495102 scopus 로고    scopus 로고
    • Goodman and Gilman's The Pharmacological Basis of Therapeutics, 9th Ed
    • In: Hardman JG, Limbird LE, Molinoff PB, Ruddon RW, Gilman AG, editors, New York, McGraw-Hill
    • Chambers HF, Chambers MA, (1996) Goodman and Gilman's The Pharmacological Basis of Therapeutics, 9th Ed. In: Hardman JG, Limbird LE, Molinoff PB, Ruddon RW, Gilman AG, editors. New York McGraw-Hill.
    • (1996)
    • Chambers, H.F.1    Chambers, M.A.2
  • 16
    • 9644265292 scopus 로고    scopus 로고
    • Berberine, a strong polyriboadenylic acid binding plant alkaloid: Spectroscopic, viscometric, and thermodynamic study
    • Yadav RC, Suresh Kumar G, Bhadra K, Giri P, Sinha R, et al. (2005) Berberine, a strong polyriboadenylic acid binding plant alkaloid: Spectroscopic, viscometric, and thermodynamic study. Bioorg Med Chem 13: 165-174.
    • (2005) Bioorg Med Chem , vol.13 , pp. 165-174
    • Yadav, R.C.1    Suresh Kumar, G.2    Bhadra, K.3    Giri, P.4    Sinha, R.5
  • 17
    • 33750167675 scopus 로고    scopus 로고
    • Molecular aspects on the specific interaction of cytotoxic plant alkaloid palmatine to poly(A)
    • Giri P, Hossain M, Suresh Kumar G, (2006) Molecular aspects on the specific interaction of cytotoxic plant alkaloid palmatine to poly(A). Int J Biol Macromol 39: 210-221.
    • (2006) Int J Biol Macromol , vol.39 , pp. 210-221
    • Giri, P.1    Hossain, M.2    Suresh Kumar, G.3
  • 18
    • 33644988048 scopus 로고    scopus 로고
    • RNA specific molecules: Cytotoxic plant alkaloid palmatine binds strongly to poly(A)
    • Giri P, Hossain M, Suresh Kumar G, (2006) RNA specific molecules: Cytotoxic plant alkaloid palmatine binds strongly to poly(A). Bioorg Med Chem Lett 16: 2364-2368.
    • (2006) Bioorg Med Chem Lett , vol.16 , pp. 2364-2368
    • Giri, P.1    Hossain, M.2    Suresh Kumar, G.3
  • 19
    • 60649106752 scopus 로고    scopus 로고
    • RNA targeting through binding of small molecules: Studies on t-RNA binding by the cytotoxic protoberberine alkaloid coralyne
    • Islam MM, Pandya P, Kumar S, Suresh Kumar G, (2009) RNA targeting through binding of small molecules: Studies on t-RNA binding by the cytotoxic protoberberine alkaloid coralyne. Mol BioSyst 5: 244-254.
    • (2009) Mol BioSyst , vol.5 , pp. 244-254
    • Islam, M.M.1    Pandya, P.2    Kumar, S.3    Suresh Kumar, G.4
  • 20
    • 33846450257 scopus 로고    scopus 로고
    • RNA binding small molecules: Studies on t-RNA binding by cytotoxic plant alkaloids berberine, palmatine and the comparison to ethidium
    • Islam MM, Sinha R, Suresh Kumar G, (2007) RNA binding small molecules: Studies on t-RNA binding by cytotoxic plant alkaloids berberine, palmatine and the comparison to ethidium. Biophys Chem 125: 508-520.
    • (2007) Biophys Chem , vol.125 , pp. 508-520
    • Islam, M.M.1    Sinha, R.2    Suresh Kumar, G.3
  • 21
    • 41049107618 scopus 로고    scopus 로고
    • Binding of protoberberine alkaloid coralyne with double stranded poly(A): A biophysical study
    • Giri P, Suresh Kumar G, (2008) Binding of protoberberine alkaloid coralyne with double stranded poly(A): A biophysical study. Mol Biosyst 4: 341-348.
    • (2008) Mol Biosyst , vol.4 , pp. 341-348
    • Giri, P.1    Suresh Kumar, G.2
  • 22
    • 44149108423 scopus 로고    scopus 로고
    • Self-structure induction in single stranded poly(A) by small molecules: Studies on DNA intercalators, partial intercalators and groove binding molecules
    • Giri P, Suresh Kumar G, (2008) Self-structure induction in single stranded poly(A) by small molecules: Studies on DNA intercalators, partial intercalators and groove binding molecules. Arch Biochem Biophys 474: 183-192.
    • (2008) Arch Biochem Biophys , vol.474 , pp. 183-192
    • Giri, P.1    Suresh Kumar, G.2
  • 23
    • 65649086094 scopus 로고    scopus 로고
    • Molecular aspects of small molecules-poly(A) interaction: An approach to RNA based drug design
    • Giri P, Suresh Kumar G, (2009) Molecular aspects of small molecules-poly(A) interaction: An approach to RNA based drug design. Curr Med Chem 16: 965-987.
    • (2009) Curr Med Chem , vol.16 , pp. 965-987
    • Giri, P.1    Suresh Kumar, G.2
  • 24
    • 0025312054 scopus 로고
    • Natural products as a source of potential cancer chemotherapeutic and chemopreventive agents
    • Cassady JM, Baird WM, Chang CJ, (1990) Natural products as a source of potential cancer chemotherapeutic and chemopreventive agents. J Nat Prod 53: 23-41.
    • (1990) J Nat Prod , vol.53 , pp. 23-41
    • Cassady, J.M.1    Baird, W.M.2    Chang, C.J.3
  • 27
    • 0025881201 scopus 로고
    • Base and sequence-dependent binding of aristololactam-β-D-glucoside to deoxyribonucleic acid
    • Nandi R, Chakraborty S, Maiti M, (1991) Base and sequence-dependent binding of aristololactam-β-D-glucoside to deoxyribonucleic acid. Biochemistry 30: 3715-3720.
    • (1991) Biochemistry , vol.30 , pp. 3715-3720
    • Nandi, R.1    Chakraborty, S.2    Maiti, M.3
  • 28
    • 0033545968 scopus 로고    scopus 로고
    • Spectroscopic studies on the interaction of aristololactam-β-D-glucoside with DNA and RNA double and triple helices: A comparative study
    • Ray A, Suresh Kumar G, Das S, Maiti M, (1999) Spectroscopic studies on the interaction of aristololactam-β-D-glucoside with DNA and RNA double and triple helices: A comparative study. Biochemistry 38: 6239-6247.
    • (1999) Biochemistry , vol.38 , pp. 6239-6247
    • Ray, A.1    Suresh Kumar, G.2    Das, S.3    Maiti, M.4
  • 29
    • 17744363092 scopus 로고    scopus 로고
    • Structure activity relationships of aristolochic acid analogues: Toxicity in cultured renal epithelial cells
    • Balachandran P, Wei F, Lin RC, Kahn IA, Pasco DS, (2005) Structure activity relationships of aristolochic acid analogues: Toxicity in cultured renal epithelial cells. Kidney Int 67: 1797-1805.
    • (2005) Kidney Int , vol.67 , pp. 1797-1805
    • Balachandran, P.1    Wei, F.2    Lin, R.C.3    Kahn, I.A.4    Pasco, D.S.5
  • 30
    • 41149117564 scopus 로고    scopus 로고
    • Pentamidine binds to tRNA through non-specific hydrophobic interactions and inhibits aminoacylation and translation
    • Sun T, Zhang Y, (2008) Pentamidine binds to tRNA through non-specific hydrophobic interactions and inhibits aminoacylation and translation. Nucleic Acids Res 36: 1654-1664.
    • (2008) Nucleic Acids Res , vol.36 , pp. 1654-1664
    • Sun, T.1    Zhang, Y.2
  • 31
    • 77957303874 scopus 로고    scopus 로고
    • Probing tRNA interaction with biogenic polyamines
    • Ouameur AA, Bourassa P, Tajmir-Riahi HA, (2010) Probing tRNA interaction with biogenic polyamines. RNA 16: 1968-1979.
    • (2010) RNA , vol.16 , pp. 1968-1979
    • Ouameur, A.A.1    Bourassa, P.2    Tajmir-Riahi, H.A.3
  • 32
    • 63849218294 scopus 로고    scopus 로고
    • Structural analysis of DNA and RNA interactions with antioxidant flavanoids
    • Kanakis CD, Nafisi Sh, Rajabi M, Shadaloi A, Tarantilis PA, et al. (2009) Structural analysis of DNA and RNA interactions with antioxidant flavanoids. Spectroscopy 23: 29-43.
    • (2009) Spectroscopy , vol.23 , pp. 29-43
    • Kanakis, C.D.1    Nafisi, S.2    Rajabi, M.3    Shadaloi, A.4    Tarantilis, P.A.5
  • 34
    • 0016175370 scopus 로고
    • Theoretical aspects of DNA-protein interactions: cooperative and noncooperative binding of large ligands to a one dimensional homogeneous lattice
    • McGhee JD, Von Hippel PH, (1974) Theoretical aspects of DNA-protein interactions: cooperative and noncooperative binding of large ligands to a one dimensional homogeneous lattice. J Mol Biol 86: 469-489.
    • (1974) J Mol Biol , vol.86 , pp. 469-489
    • McGhee, J.D.1    von Hippel, P.H.2
  • 36
    • 37049076176 scopus 로고
    • Sequence dependent energy transfer from DNA to a simple aromatic chromophore
    • Kumar CV, Asuncion EH, (1992) Sequence dependent energy transfer from DNA to a simple aromatic chromophore. J Chem Soc Chem Commun 6: 470-472.
    • (1992) J Chem Soc Chem Commun , vol.6 , pp. 470-472
    • Kumar, C.V.1    Asuncion, E.H.2
  • 37
    • 0017375155 scopus 로고
    • Spectroscopic studies of the interaction of daunomycin with transfer RNA
    • Shafer RH, (1977) Spectroscopic studies of the interaction of daunomycin with transfer RNA. Biochem Pharmacol 26: 1729-1734.
    • (1977) Biochem Pharmacol , vol.26 , pp. 1729-1734
    • Shafer, R.H.1
  • 38
    • 10044246304 scopus 로고    scopus 로고
    • Influence of the amino substituents in the interaction of ethidium bromide with DNA
    • Garbett NC, Hammond NB, Graves DE, (2004) Influence of the amino substituents in the interaction of ethidium bromide with DNA. Biophys J 87: 3974-3981.
    • (2004) Biophys J , vol.87 , pp. 3974-3981
    • Garbett, N.C.1    Hammond, N.B.2    Graves, D.E.3
  • 39
    • 0001511660 scopus 로고
    • Formation and stability of inorganic complexes in solution
    • Job P, (1928) Formation and stability of inorganic complexes in solution. Ann Chim 9: 113-203.
    • (1928) Ann Chim , vol.9 , pp. 113-203
    • Job, P.1
  • 40
    • 34247540790 scopus 로고    scopus 로고
    • Advance in the analysis of isothermal titration calorimetry data for ligand-DNA interactions
    • Buurma NJ, Haq I, (2007) Advance in the analysis of isothermal titration calorimetry data for ligand-DNA interactions. Methods 42: 162-172.
    • (2007) Methods , vol.42 , pp. 162-172
    • Buurma, N.J.1    Haq, I.2
  • 41
    • 37549057040 scopus 로고    scopus 로고
    • Applications of isothermal titration calorimetry in RNA biochemistry and biophysics
    • Faig AL, (2007) Applications of isothermal titration calorimetry in RNA biochemistry and biophysics. Biopolymers 87: 293-301.
    • (2007) Biopolymers , vol.87 , pp. 293-301
    • Faig, A.L.1
  • 42
    • 4143080522 scopus 로고    scopus 로고
    • Energetics of drug-DNA interactions
    • Chaires JB, (1997) Energetics of drug-DNA interactions. Biopolymers 44: 201-215.
    • (1997) Biopolymers , vol.44 , pp. 201-215
    • Chaires, J.B.1
  • 43
    • 34547840328 scopus 로고    scopus 로고
    • Specific binding and self-structure induction to poly(A) by the cytotoxic plant alkaloid sanguinarine
    • Giri P, Suresh Kumar G, (2007) Specific binding and self-structure induction to poly(A) by the cytotoxic plant alkaloid sanguinarine. Biochim Biophys Acta 1770: 1419-1426.
    • (2007) Biochim Biophys Acta , vol.1770 , pp. 1419-1426
    • Giri, P.1    Suresh Kumar, G.2
  • 44
    • 0025345159 scopus 로고
    • Biophysical chemistry of the daunomycin-DNA interaction
    • Chaires JB, (1990) Biophysical chemistry of the daunomycin-DNA interaction. Biophys Chem 35: 191-202.
    • (1990) Biophys Chem , vol.35 , pp. 191-202
    • Chaires, J.B.1
  • 45
    • 0036446459 scopus 로고    scopus 로고
    • Daunomycin binding to deoxypolynucleotides with alternating sequences: complete thermodynamic profiles of heterogeneous binding sites
    • Suh D, Oh YK, Hur MW, Ahn B, Chaires JB, (2002) Daunomycin binding to deoxypolynucleotides with alternating sequences: complete thermodynamic profiles of heterogeneous binding sites. Nucleosides Nucleotides Nucleic acids 21: 637-649.
    • (2002) Nucleosides Nucleotides Nucleic Acids , vol.21 , pp. 637-649
    • Suh, D.1    Oh, Y.K.2    Hur, M.W.3    Ahn, B.4    Chaires, J.B.5
  • 46
    • 0030930212 scopus 로고    scopus 로고
    • Electrostatic interactions in RNA aminoglycosides binding
    • Wang H, Tor Y, (1997) Electrostatic interactions in RNA aminoglycosides binding. J Am Chem Soc 119: 8734-8735.
    • (1997) J Am Chem Soc , vol.119 , pp. 8734-8735
    • Wang, H.1    Tor, Y.2
  • 48
    • 0017820499 scopus 로고
    • Thermodynamic analysis of ion effects on the binding and conformational equilibria of proteins and nucleic acids: The role of ion association or release, screening, and ion effects on water activity
    • Record MT Jr, Anderson CF, Lohman TM, (1978) Thermodynamic analysis of ion effects on the binding and conformational equilibria of proteins and nucleic acids: The role of ion association or release, screening, and ion effects on water activity. Q Rev Biophys 11: 103-178.
    • (1978) Q Rev Biophys , vol.11 , pp. 103-178
    • Record Jr., M.T.1    Anderson, C.F.2    Lohman, T.M.3
  • 49
    • 0030465221 scopus 로고    scopus 로고
    • Dissecting the free energy of drug binding to DNA
    • Chaires JB, (1996) Dissecting the free energy of drug binding to DNA. Anti-Cancer Drug Des 11: 569-580.
    • (1996) Anti-Cancer Drug Des , vol.11 , pp. 569-580
    • Chaires, J.B.1
  • 50
    • 0025321375 scopus 로고
    • Thermodynamics of the interaction of aristololactam-β-D-glucoside with DNA
    • Chakraborty S, Nandi R, Maiti M, (1990) Thermodynamics of the interaction of aristololactam-β-D-glucoside with DNA. Biochem Pharmacol 39: 1181-1186.
    • (1990) Biochem Pharmacol , vol.39 , pp. 1181-1186
    • Chakraborty, S.1    Nandi, R.2    Maiti, M.3
  • 51
    • 79953081932 scopus 로고    scopus 로고
    • Interaction of aristololactam-β-D-glucoside and daunomycin with poly(A): Spectroscopic and calorimetric studies
    • Das A, Bhadra K, Achari B, Chakraborty P, Suresh Kumar G, (2011) Interaction of aristololactam-β-D-glucoside and daunomycin with poly(A): Spectroscopic and calorimetric studies. Biophys Chem 155: 10-19.
    • (2011) Biophys Chem , vol.155 , pp. 10-19
    • Das, A.1    Bhadra, K.2    Achari, B.3    Chakraborty, P.4    Suresh Kumar, G.5
  • 52
    • 0034435652 scopus 로고    scopus 로고
    • Structural and thermodynamic strategies for site-specific DNA binding proteins
    • Jen-Jacobson L, Engler LE, Jacobson LA, (2000) Structural and thermodynamic strategies for site-specific DNA binding proteins. Structure 8: 1015-1023.
    • (2000) Structure , vol.8 , pp. 1015-1023
    • Jen-Jacobson, L.1    Engler, L.E.2    Jacobson, L.A.3
  • 53
    • 33747802145 scopus 로고    scopus 로고
    • A thermodynamic signature for drug-DNA binding mode
    • Chaires JB, (2006) A thermodynamic signature for drug-DNA binding mode. Arch Biochem Biophys 453: 26-31.
    • (2006) Arch Biochem Biophys , vol.453 , pp. 26-31
    • Chaires, J.B.1
  • 54
    • 61949239352 scopus 로고    scopus 로고
    • Spectroscopic and calorimetric studies on the binding of alkaloids berberine, palmatine and coralyne to double stranded RNA polynucleotides
    • Islam MM, Roy Chowdhury S, Suresh Kumar G, (2009) Spectroscopic and calorimetric studies on the binding of alkaloids berberine, palmatine and coralyne to double stranded RNA polynucleotides. J Phys Chem B 113: 1210-1224.
    • (2009) J Phys Chem B , vol.113 , pp. 1210-1224
    • Islam, M.M.1    Roy Chowdhury, S.2    Suresh Kumar, G.3
  • 55
    • 0034655961 scopus 로고    scopus 로고
    • Nonsequence-specific DNA recognition: a structural perspective
    • Murphy FV, Churchill ME, (2000) Nonsequence-specific DNA recognition: a structural perspective. Structure 15: R83-R89.
    • (2000) Structure , vol.15
    • Murphy, F.V.1    Churchill, M.E.2
  • 56
    • 0036647051 scopus 로고    scopus 로고
    • Thermodynamics of drug-DNA interactions
    • Haq I, (2002) Thermodynamics of drug-DNA interactions. Arch Biochem Biophys 403: 1-15.
    • (2002) Arch Biochem Biophys , vol.403 , pp. 1-15
    • Haq, I.1
  • 57
    • 33846599391 scopus 로고    scopus 로고
    • Microcalorimetry of interaction of dihydro-imidazo-phenanthridinium (DIP)-based compounds with duplex DNA
    • Guthrie KM, Parenty ADC, Smith LV, Cronin L, Cooper A, (2007) Microcalorimetry of interaction of dihydro-imidazo-phenanthridinium (DIP)-based compounds with duplex DNA. Biophys Chem 126: 117-123.
    • (2007) Biophys Chem , vol.126 , pp. 117-123
    • Guthrie, K.M.1    Parenty, A.D.C.2    Smith, L.V.3    Cronin, L.4    Cooper, A.5
  • 58
    • 39449103618 scopus 로고    scopus 로고
    • DNA intercalation by quinacrine and methylene blue: A comparative binding and thermodynamic characterization study
    • Hossain M, Giri P, Suresh Kumar G, (2008) DNA intercalation by quinacrine and methylene blue: A comparative binding and thermodynamic characterization study. DNA Cell Biol 26: 81-90.
    • (2008) DNA Cell Biol , vol.26 , pp. 81-90
    • Hossain, M.1    Giri, P.2    Suresh Kumar, G.3
  • 59
    • 0034713855 scopus 로고    scopus 로고
    • Energetics of DNA intercalation reactions
    • Ren J, Jenkins TC, Chaires JB, (2000) Energetics of DNA intercalation reactions. Biochemistry 39: 8439-8447.
    • (2000) Biochemistry , vol.39 , pp. 8439-8447
    • Ren, J.1    Jenkins, T.C.2    Chaires, J.B.3
  • 60
    • 33750979299 scopus 로고    scopus 로고
    • Physical and structural basis for the strong interactions of the -ImPy- central pairing motif in the polyamide f-ImPyIm
    • Buchmuelle KL, Bailey SL, Matthews DA, Taherbhai ZT, Register JK, et al. (2006) Physical and structural basis for the strong interactions of the-ImPy- central pairing motif in the polyamide f-ImPyIm. Biochemistry 45: 13551-13565.
    • (2006) Biochemistry , vol.45 , pp. 13551-13565
    • Buchmuelle, K.L.1    Bailey, S.L.2    Matthews, D.A.3    Taherbhai, Z.T.4    Register, J.K.5
  • 61
    • 33645768556 scopus 로고    scopus 로고
    • Binding-linked protonation of A DNA minor groove agent
    • Nguyen B, Stanek J, Wilson WD, (2006) Binding-linked protonation of A DNA minor groove agent. Biophys J 90: 1319-1328.
    • (2006) Biophys J , vol.90 , pp. 1319-1328
    • Nguyen, B.1    Stanek, J.2    Wilson, W.D.3
  • 62
    • 0024378717 scopus 로고
    • Role of the hydrophobic effect in stability of site-specific protein-DNA complexes
    • Ha JH, Spolar RS, Record MT, (1989) Role of the hydrophobic effect in stability of site-specific protein-DNA complexes. J Mol Biol 209: 801-816.
    • (1989) J Mol Biol , vol.209 , pp. 801-816
    • Ha, J.H.1    Spolar, R.S.2    Record, M.T.3
  • 63
    • 0015848275 scopus 로고
    • The conformational transitions in yeast tRNAPhe as studied with tRNAPhe fragments
    • Riesner D, Maass G, Thiebe R, Philippsen P, Zachau HG, (1973) The conformational transitions in yeast tRNAPhe as studied with tRNAPhe fragments. Eur J Biochem 36: 76-88.
    • (1973) Eur J Biochem , vol.36 , pp. 76-88
    • Riesner, D.1    Maass, G.2    Thiebe, R.3    Philippsen, P.4    Zachau, H.G.5
  • 64
    • 55549093088 scopus 로고    scopus 로고
    • Binding of DNA binding alkaloids berberine and palmatine to tRNA and comparison to ethidium: Spectroscopic and molecular modeling studies
    • Islam MM, Pandya P, Roy Chowdhury S, Kumar S, Suresh Kumar G, (2008) Binding of DNA binding alkaloids berberine and palmatine to tRNA and comparison to ethidium: Spectroscopic and molecular modeling studies. J Mol Struct 891: 498-507.
    • (2008) J Mol Struct , vol.891 , pp. 498-507
    • Islam, M.M.1    Pandya, P.2    Roy Chowdhury, S.3    Kumar, S.4    Suresh Kumar, G.5
  • 66
    • 84986865509 scopus 로고
    • Carbon-13 NMR spectra of some phenanthrene derivatives from Aristolochia indica and their analogues
    • Achari B, Bandyopadhyay S, Chakraborty AK, Pakrashi SC, (1984) Carbon-13 NMR spectra of some phenanthrene derivatives from Aristolochia indica and their analogues. Org Mag Reson 22: 741-746.
    • (1984) Org Mag Reson , vol.22 , pp. 741-746
    • Achari, B.1    Bandyopadhyay, S.2    Chakraborty, A.K.3    Pakrashi, S.C.4
  • 67
    • 0020452657 scopus 로고
    • Studies on interaction of anthracycline antibiotics and deoxyribonucleic acid: Equilibrium binding studies on the interaction of daunomycin with deoxyribonucleic acid
    • Chaires JB, Dattagupta N, Crothers DM, (1982) Studies on interaction of anthracycline antibiotics and deoxyribonucleic acid: Equilibrium binding studies on the interaction of daunomycin with deoxyribonucleic acid. Biochemistry 21: 3933-3940.
    • (1982) Biochemistry , vol.21 , pp. 3933-3940
    • Chaires, J.B.1    Dattagupta, N.2    Crothers, D.M.3
  • 68
    • 34247631618 scopus 로고    scopus 로고
    • Molecular recognition of DNA by small molecules: AT base pair specific intercalative binding of cytotoxic plant alkaloid palmatine
    • Bhadra K, Maiti M, Suresh Kumar G, (2007) Molecular recognition of DNA by small molecules: AT base pair specific intercalative binding of cytotoxic plant alkaloid palmatine. Biochim Biophys Acta 1770: 1071-1080.
    • (2007) Biochim Biophys Acta , vol.1770 , pp. 1071-1080
    • Bhadra, K.1    Maiti, M.2    Suresh Kumar, G.3
  • 69
    • 28844436476 scopus 로고    scopus 로고
    • The binding of DNA intercalating and non-intercalating compounds to A-form and protonated form of poly(rC).poly(rG): spectroscopic and viscometric study
    • Sinha R, Islam MM, Bhadra K, Suresh Kumar G, Banerjee A, et al. (2006) The binding of DNA intercalating and non-intercalating compounds to A-form and protonated form of poly(rC).poly(rG): spectroscopic and viscometric study. Bioorg Med Chem 14: 800-814.
    • (2006) Bioorg Med Chem , vol.14 , pp. 800-814
    • Sinha, R.1    Islam, M.M.2    Bhadra, K.3    Suresh Kumar, G.4    Banerjee, A.5
  • 70
    • 70349973209 scopus 로고    scopus 로고
    • DNA intercalation of methylene blue and quinacrine: New insights into base and sequence specificity from structural and thermodynamic studies with polynucleotides
    • Hossain M, Suresh Kumar G, (2009) DNA intercalation of methylene blue and quinacrine: New insights into base and sequence specificity from structural and thermodynamic studies with polynucleotides. Mol Biosyst 5: 1311-1322.
    • (2009) Mol Biosyst , vol.5 , pp. 1311-1322
    • Hossain, M.1    Suresh Kumar, G.2


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