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Volumn 200, Issue 2, 2011, Pages 229-236

Automated analysis of zebrafish images for phenotypic changes in drug discovery

Author keywords

Automatic creation of ROI; Digital image processing; Image alignment; Quantification of gene expression; Zebrafish

Indexed keywords

GAMMA SECRETASE; GAMMA SECRETASE INHIBITOR;

EID: 80051600149     PISSN: 01650270     EISSN: 1872678X     Source Type: Journal    
DOI: 10.1016/j.jneumeth.2011.06.015     Document Type: Article
Times cited : (17)

References (44)
  • 2
    • 77950901539 scopus 로고    scopus 로고
    • Phenotypic analysis of images of zebrafish treated with Alzheimer's gamma-secretase inhibitors
    • Arslanova D., Yang T., Xu X., Wong S., Augelli-Szafran C., Xia W. Phenotypic analysis of images of zebrafish treated with Alzheimer's gamma-secretase inhibitors. BMC Biotechnol 2010, 10:24.
    • (2010) BMC Biotechnol , vol.10 , pp. 24
    • Arslanova, D.1    Yang, T.2    Xu, X.3    Wong, S.4    Augelli-Szafran, C.5    Xia, W.6
  • 3
    • 0037200719 scopus 로고    scopus 로고
    • High-throughput behavioral screening method for detecting auditory response defects in zebrafish
    • Band P.I., Yelick P.C., Malicki J.J., Sewell W.F. High-throughput behavioral screening method for detecting auditory response defects in zebrafish. J Neurosci Methods 2002, 182(2):177-187.
    • (2002) J Neurosci Methods , vol.182 , Issue.2 , pp. 177-187
    • Band, P.I.1    Yelick, P.C.2    Malicki, J.J.3    Sewell, W.F.4
  • 4
    • 48149111146 scopus 로고    scopus 로고
    • Zebrafish: an emerging technology for in vivo pharmacological assessment to identify potential safety liabilities in early drug discovery
    • Barros T., Alderton W., Reynolds H., Roach A., Berghmans S. Zebrafish: an emerging technology for in vivo pharmacological assessment to identify potential safety liabilities in early drug discovery. Br J Pharmacol 2008, 154(7):1400-1413.
    • (2008) Br J Pharmacol , vol.154 , Issue.7 , pp. 1400-1413
    • Barros, T.1    Alderton, W.2    Reynolds, H.3    Roach, A.4    Berghmans, S.5
  • 5
    • 12944299273 scopus 로고    scopus 로고
    • Notch-Delta signaling is required for spatial patterning and Muller glia differentiation in the zebrafish retina
    • Bernardos R., Lentz S., Wolfe M., Raymond P. Notch-Delta signaling is required for spatial patterning and Muller glia differentiation in the zebrafish retina. Dev Biol 2005, 278(2):381-395.
    • (2005) Dev Biol , vol.278 , Issue.2 , pp. 381-395
    • Bernardos, R.1    Lentz, S.2    Wolfe, M.3    Raymond, P.4
  • 6
    • 80051592668 scopus 로고    scopus 로고
    • Development of a transgenic zebrafish model expressing GFP in the notochord, somite and liver directed by the hfe2 gene promoter
    • [Epub ahead of print]
    • Bian Y.H., Xu C., Li J., Xu J., Zhang H., Du S.J. Development of a transgenic zebrafish model expressing GFP in the notochord, somite and liver directed by the hfe2 gene promoter. Transgenic Res 2010, [Epub ahead of print].
    • (2010) Transgenic Res
    • Bian, Y.H.1    Xu, C.2    Li, J.3    Xu, J.4    Zhang, H.5    Du, S.J.6
  • 7
    • 4644314040 scopus 로고    scopus 로고
    • Ethanol exposure alters zebrafish development: a novel model of fetal alcohol syndrome
    • Bilotta J., Barnett J.A., Hancock L., Saszik S. Ethanol exposure alters zebrafish development: a novel model of fetal alcohol syndrome. Neurotoxicol Teratol 2004, 6(6):737-743.
    • (2004) Neurotoxicol Teratol , vol.6 , Issue.6 , pp. 737-743
    • Bilotta, J.1    Barnett, J.A.2    Hancock, L.3    Saszik, S.4
  • 8
  • 9
    • 58549090296 scopus 로고    scopus 로고
    • Identification of zebrafish A2 adenosine receptors and expression in developing embryos
    • Boehmler W., Petko J., Woll M., Frey C., Thisse B., Thisse C., et al. Identification of zebrafish A2 adenosine receptors and expression in developing embryos. Gene Expr Patterns 2009, 9(3):144-152.
    • (2009) Gene Expr Patterns , vol.9 , Issue.3 , pp. 144-152
    • Boehmler, W.1    Petko, J.2    Woll, M.3    Frey, C.4    Thisse, B.5    Thisse, C.6
  • 10
    • 0026967479 scopus 로고
    • A survey of image registration techniques
    • Brown L.G. A survey of image registration techniques. ACM Comput Surv 1992, 24(4):325-376.
    • (1992) ACM Comput Surv , vol.24 , Issue.4 , pp. 325-376
    • Brown, L.G.1
  • 11
    • 33645101015 scopus 로고    scopus 로고
    • Zebrafish lacking Alzheimer presenilin enhancer 2 (Pen-2) demonstrate excessive p53-dependent apoptosis and neuronal loss
    • Campbell W., Yang H., Zetterberg H., Baulac S., Sears J., Liu T., et al. Zebrafish lacking Alzheimer presenilin enhancer 2 (Pen-2) demonstrate excessive p53-dependent apoptosis and neuronal loss. J Neurochem 2006, 96(5):1423-1430.
    • (2006) J Neurochem , vol.96 , Issue.5 , pp. 1423-1430
    • Campbell, W.1    Yang, H.2    Zetterberg, H.3    Baulac, S.4    Sears, J.5    Liu, T.6
  • 12
    • 0032446549 scopus 로고    scopus 로고
    • Early development of the zebrafish pronephros and analysis of mutations affecting pronephric function
    • Drummond I.A., Majumdar A., Hentschel H., Elger M., Solnica-Krezel L., Schier A.F., et al. Early development of the zebrafish pronephros and analysis of mutations affecting pronephric function. Development 1998, 125(23):4655-4667.
    • (1998) Development , vol.125 , Issue.23 , pp. 4655-4667
    • Drummond, I.A.1    Majumdar, A.2    Hentschel, H.3    Elger, M.4    Solnica-Krezel, L.5    Schier, A.F.6
  • 13
    • 0029969802 scopus 로고    scopus 로고
    • Improved image registration by using Fourier interpolation
    • Eddyy W.F., Fitzgerald M., Noll D.C. Improved image registration by using Fourier interpolation. Magn Reson Med 1996, 36(6):923-931.
    • (1996) Magn Reson Med , vol.36 , Issue.6 , pp. 923-931
    • Eddyy, W.F.1    Fitzgerald, M.2    Noll, D.C.3
  • 14
    • 73649131600 scopus 로고    scopus 로고
    • Gene expression changes in developing zebrafish as potential markers for rapid developmental neurotoxicity screening
    • Fan C.Y., Cowden J., Simmons S.O., Padilla S., Ramabhadran R. Gene expression changes in developing zebrafish as potential markers for rapid developmental neurotoxicity screening. Neurotoxicol Teratol 2010, 32(1):91-98.
    • (2010) Neurotoxicol Teratol , vol.32 , Issue.1 , pp. 91-98
    • Fan, C.Y.1    Cowden, J.2    Simmons, S.O.3    Padilla, S.4    Ramabhadran, R.5
  • 15
    • 28044467720 scopus 로고    scopus 로고
    • Reconstruction and representation of caudal vasculature of zebrfish embryo from confocal scanning laser fluorescence microscopic images
    • Feng J., Cheng S., Chan P., Ip H. Reconstruction and representation of caudal vasculature of zebrfish embryo from confocal scanning laser fluorescence microscopic images. Comput Biol Med 2005, 35(10):915-931.
    • (2005) Comput Biol Med , vol.35 , Issue.10 , pp. 915-931
    • Feng, J.1    Cheng, S.2    Chan, P.3    Ip, H.4
  • 16
    • 73349128469 scopus 로고    scopus 로고
    • Automated high-throughput mapping of promoter-enhancer interactions in zebrafish embryos
    • Gehrig J., Reischl M., Kalmar E., Ferg M., Hadzhiev Y., Zaucker A., et al. Automated high-throughput mapping of promoter-enhancer interactions in zebrafish embryos. Nat Methods 2009, 6:911-916.
    • (2009) Nat Methods , vol.6 , pp. 911-916
    • Gehrig, J.1    Reischl, M.2    Kalmar, E.3    Ferg, M.4    Hadzhiev, Y.5    Zaucker, A.6
  • 17
    • 58449134848 scopus 로고    scopus 로고
    • Automated identification of neurons in 3D confocal datasets from zebrafish brainstem
    • Kamali M., Day L., Brooks D., Zhou X., O'Malley D. Automated identification of neurons in 3D confocal datasets from zebrafish brainstem. J Microsc 2009, 233(1):114-131.
    • (2009) J Microsc , vol.233 , Issue.1 , pp. 114-131
    • Kamali, M.1    Day, L.2    Brooks, D.3    Zhou, X.4    O'Malley, D.5
  • 19
    • 70349126280 scopus 로고    scopus 로고
    • Chemical genetic screening in the zebrafish embryo
    • Kaufman C.K., White R.M., Zon L. Chemical genetic screening in the zebrafish embryo. Nat Protoc 2009, 4(10):1422-1432.
    • (2009) Nat Protoc , vol.4 , Issue.10 , pp. 1422-1432
    • Kaufman, C.K.1    White, R.M.2    Zon, L.3
  • 21
    • 0029271481 scopus 로고
    • A contour-based approach to multisensor image registration
    • Li H., Manjunath B.S., Mitra S.K. A contour-based approach to multisensor image registration. IEEE Trans Image Process 1995, 4(3):320-334.
    • (1995) IEEE Trans Image Process , vol.4 , Issue.3 , pp. 320-334
    • Li, H.1    Manjunath, B.S.2    Mitra, S.K.3
  • 22
    • 56149108974 scopus 로고    scopus 로고
    • An automated method for cell detection in zebrafish
    • Liu T., Li G., Nie J., Tarokh A., Zhou X., Guo L., et al. An automated method for cell detection in zebrafish. Neuroinformatics 2008, 6(1):5-21.
    • (2008) Neuroinformatics , vol.6 , Issue.1 , pp. 5-21
    • Liu, T.1    Li, G.2    Nie, J.3    Tarokh, A.4    Zhou, X.5    Guo, L.6
  • 23
    • 33646234464 scopus 로고    scopus 로고
    • Computerized image analysis for quantitative neuronal phenotyping in zebrafish
    • Liu T., Lu J., Wang Y., Campbell W., Huang L., Zhu J., et al. Computerized image analysis for quantitative neuronal phenotyping in zebrafish. J Neurosci Methods 2006, 153(2):190-202.
    • (2006) J Neurosci Methods , vol.153 , Issue.2 , pp. 190-202
    • Liu, T.1    Lu, J.2    Wang, Y.3    Campbell, W.4    Huang, L.5    Zhu, J.6
  • 24
    • 38849115219 scopus 로고    scopus 로고
    • ZFIQ: a software package for zebrafish biology
    • Liu T., Nie J., Li G., Guo L., Wong S. ZFIQ: a software package for zebrafish biology. Bioinformatics 2008, 24(3):438-439.
    • (2008) Bioinformatics , vol.24 , Issue.3 , pp. 438-439
    • Liu, T.1    Nie, J.2    Li, G.3    Guo, L.4    Wong, S.5
  • 25
    • 69249210903 scopus 로고    scopus 로고
    • Zebrafish chemical screening reveals an inhibitor of dusp6 that expands cardiac cell lineages
    • Molina G., Vogt A., Bakan A., Dai W., Queiroz d.O.P., Znosko W., et al. Zebrafish chemical screening reveals an inhibitor of dusp6 that expands cardiac cell lineages. Nat Chem Biol 2009, 5(9):680-687.
    • (2009) Nat Chem Biol , vol.5 , Issue.9 , pp. 680-687
    • Molina, G.1    Vogt, A.2    Bakan, A.3    Dai, W.4    Queiroz, D.5    Znosko, W.6
  • 27
    • 0018306059 scopus 로고
    • A threshold selection method from gray level histograms
    • Otsu N. A threshold selection method from gray level histograms. IEEE Trans Syst Man Cybern 1979, 9:62-66.
    • (1979) IEEE Trans Syst Man Cybern , vol.9 , pp. 62-66
    • Otsu, N.1
  • 28
    • 77955844066 scopus 로고    scopus 로고
    • The comparative neuroanatomy and neurochemistry of zebrafish CNS systems of relevance to human neuropsychiatric diseases
    • Panula P., Chen Y.C., Priyadarshini M., Kudo H., Semenova S., Sundvik M., et al. The comparative neuroanatomy and neurochemistry of zebrafish CNS systems of relevance to human neuropsychiatric diseases. Neurobiol Dis 2010, 40(1):46-57.
    • (2010) Neurobiol Dis , vol.40 , Issue.1 , pp. 46-57
    • Panula, P.1    Chen, Y.C.2    Priyadarshini, M.3    Kudo, H.4    Semenova, S.5    Sundvik, M.6
  • 29
    • 0035657098 scopus 로고    scopus 로고
    • The art and design of genetic screens: zebrafish
    • Patton E.E., Zon L.I. The art and design of genetic screens: zebrafish. Nat Rev Genet 2001, 2(12):956-966.
    • (2001) Nat Rev Genet , vol.2 , Issue.12 , pp. 956-966
    • Patton, E.E.1    Zon, L.I.2
  • 30
    • 0034700166 scopus 로고    scopus 로고
    • Small molecule developmental screens reveal the logic and timing of vertebrate development
    • Peterson R.T., Link B., Dowling J., Schreiber S. Small molecule developmental screens reveal the logic and timing of vertebrate development. Proc Natl Acad Sci USA 2000, 97(24):12965-12969.
    • (2000) Proc Natl Acad Sci USA , vol.97 , Issue.24 , pp. 12965-12969
    • Peterson, R.T.1    Link, B.2    Dowling, J.3    Schreiber, S.4
  • 31
  • 32
    • 33646485521 scopus 로고    scopus 로고
    • Reverse genetic analysis of neurogenesis in the zebrafish retina
    • Pujic Z., Omori Y., Tsujikawa M., Thisse B., Thisse C., Malicki J. Reverse genetic analysis of neurogenesis in the zebrafish retina. Dev Biol 2006, 293(2):330-347.
    • (2006) Dev Biol , vol.293 , Issue.2 , pp. 330-347
    • Pujic, Z.1    Omori, Y.2    Tsujikawa, M.3    Thisse, B.4    Thisse, C.5    Malicki, J.6
  • 33
    • 77951443642 scopus 로고    scopus 로고
    • High-throughput cell transplantation establishes that tumor-initiating cells are abundant in zebrafish T-cell acute lymphoblastic leukemia
    • Smith A.C.H., Raimondi A.R., Salthouse C.D., Ignatius M.S., Blackburn J.S., Mizgirev I., et al. High-throughput cell transplantation establishes that tumor-initiating cells are abundant in zebrafish T-cell acute lymphoblastic leukemia. Blood 2010, 115(16):3296-3303.
    • (2010) Blood , vol.115 , Issue.16 , pp. 3296-3303
    • Smith, A.C.H.1    Raimondi, A.R.2    Salthouse, C.D.3    Ignatius, M.S.4    Blackburn, J.S.5    Mizgirev, I.6
  • 34
    • 0043240183 scopus 로고    scopus 로고
    • Cancer genetics and drug discovery in the zebrafish
    • Stern H.M., Zon L.I. Cancer genetics and drug discovery in the zebrafish. Nat Rev Cancer 2003, 3(7):533-539.
    • (2003) Nat Rev Cancer , vol.3 , Issue.7 , pp. 533-539
    • Stern, H.M.1    Zon, L.I.2
  • 35
    • 51549090572 scopus 로고    scopus 로고
    • Discovery and characterization of three novel synuclein genes in zebrafish
    • Sun Z., Gitler A.D. Discovery and characterization of three novel synuclein genes in zebrafish. Dev Dyn 2008, 237(9):2490-2495.
    • (2008) Dev Dyn , vol.237 , Issue.9 , pp. 2490-2495
    • Sun, Z.1    Gitler, A.D.2
  • 36
    • 0027453569 scopus 로고
    • Structure of the zebrafish snail1 gene and its expression in wild-type, spadetail, and no tail mutant embryos
    • Thisse C., Thisse B., Schilling T.F., Postlethwait J.H. Structure of the zebrafish snail1 gene and its expression in wild-type, spadetail, and no tail mutant embryos. Development 1993, 119:1203-1215.
    • (1993) Development , vol.119 , pp. 1203-1215
    • Thisse, C.1    Thisse, B.2    Schilling, T.F.3    Postlethwait, J.H.4
  • 37
    • 0036389722 scopus 로고    scopus 로고
    • Construction of a zebrafish cDNA microarray: gene expression profiling of the zebrafish during development
    • Ton C., Stamatiou D., Dzau V.J., Liew C.C. Construction of a zebrafish cDNA microarray: gene expression profiling of the zebrafish during development. Biochem Biophys Res Commun 2002, 296(6):1134-1142.
    • (2002) Biochem Biophys Res Commun , vol.296 , Issue.6 , pp. 1134-1142
    • Ton, C.1    Stamatiou, D.2    Dzau, V.J.3    Liew, C.C.4
  • 38
    • 37049028158 scopus 로고    scopus 로고
    • Automated, quantitative screening assay for antiangiogenic compounds using transgenic zebrafish
    • Tran T., Sneed B., Haider J., Blavo D., White A., Aiyejorun T., et al. Automated, quantitative screening assay for antiangiogenic compounds using transgenic zebrafish. Cancer Res 2007, 67(23):11386-11392.
    • (2007) Cancer Res , vol.67 , Issue.23 , pp. 11386-11392
    • Tran, T.1    Sneed, B.2    Haider, J.3    Blavo, D.4    White, A.5    Aiyejorun, T.6
  • 39
    • 0030088712 scopus 로고    scopus 로고
    • Multi-modal volume registration by maximization of mutual information
    • Wells W.M., Viola P., Atsumi H., Nakajima S., Kikinis R. Multi-modal volume registration by maximization of mutual information. Med Image Anal 1996, 1(1):35-51.
    • (1996) Med Image Anal , vol.1 , Issue.1 , pp. 35-51
    • Wells, W.M.1    Viola, P.2    Atsumi, H.3    Nakajima, S.4    Kikinis, R.5
  • 40
    • 77954548661 scopus 로고    scopus 로고
    • Exploring Alzheimer's disease in zebrafish
    • Xia W. Exploring Alzheimer's disease in zebrafish. J Alzheimers Dis 2010, 20(4):981-990.
    • (2010) J Alzheimers Dis , vol.20 , Issue.4 , pp. 981-990
    • Xia, W.1
  • 41
    • 78650139563 scopus 로고    scopus 로고
    • A high-throughput analysis method to detect regions of interest and quantify zebrafish embryo images
    • Xu X., Xu X., Huang X., Xia W., Xia S. A high-throughput analysis method to detect regions of interest and quantify zebrafish embryo images. J Biomol Screen 2010, 15(9):1152-1159.
    • (2010) J Biomol Screen , vol.15 , Issue.9 , pp. 1152-1159
    • Xu, X.1    Xu, X.2    Huang, X.3    Xia, W.4    Xia, S.5
  • 42
    • 67650759473 scopus 로고    scopus 로고
    • Zebrafish embryos as models for embryotoxic and teratological effects of chemicals
    • SP ISS
    • Yang L., Ho N., Alshut R., Legradi J., Weiss C., Reischl M., et al. Zebrafish embryos as models for embryotoxic and teratological effects of chemicals. Reprod Toxicol 2009, 28(2 SP. ISS):245-253.
    • (2009) Reprod Toxicol , vol.28 , pp. 245-253
    • Yang, L.1    Ho, N.2    Alshut, R.3    Legradi, J.4    Weiss, C.5    Reischl, M.6
  • 43
    • 0043237770 scopus 로고    scopus 로고
    • Image registration methods: a survey
    • Zitova B., Flusser J. Image registration methods: a survey. Image Vis Comput 2003, 21(11):977-1000.
    • (2003) Image Vis Comput , vol.21 , Issue.11 , pp. 977-1000
    • Zitova, B.1    Flusser, J.2
  • 44
    • 12144273121 scopus 로고    scopus 로고
    • In vivo drug discovery in the zebrafish
    • Zon L., Peterson R. In vivo drug discovery in the zebrafish. Nat Rev Drug Discov 2005, 4(1):35-44.
    • (2005) Nat Rev Drug Discov , vol.4 , Issue.1 , pp. 35-44
    • Zon, L.1    Peterson, R.2


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